-
1
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee RC, Feinbaum RL, Ambros V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 1993, 75(5):843-854
-
(1993)
Cell
, vol.75
, Issue.5
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
2
-
-
0027730383
-
Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans
-
Wightman B, Ha I, Ruvkun G. Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell 1993, 75(5):855-862
-
(1993)
Cell
, vol.75
, Issue.5
, pp. 855-862
-
-
Wightman, B.1
Ha, I.2
Ruvkun, G.3
-
3
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
-
Reinhart BJ, Slack FJ, Basson M, Pasquinelli AE, Bettinger JC, Rougvie AE, Horvitz HR, Ruvkun G. The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 2000, 403(6772):901-906
-
(2000)
Nature
, vol.403
, Issue.6772
, pp. 901-906
-
-
Reinhart, B.J.1
Slack, F.J.2
Basson, M.3
Pasquinelli, A.E.4
Bettinger, J.C.5
Rougvie, A.E.6
Horvitz, H.R.7
Ruvkun, G.8
-
4
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116(2):281-297
-
(2004)
Cell
, vol.116
, Issue.2
, pp. 281-297
-
-
Bartel, D.P.1
-
5
-
-
78751477191
-
Gene silencing by microRNAs: contributions of translational repression and mRNA decay
-
Huntzinger E, Izaurralde E. Gene silencing by microRNAs: contributions of translational repression and mRNA decay. Nature reviews Genetics 2011, 12(2):99-110
-
(2011)
Nature reviews Genetics
, vol.12
, Issue.2
, pp. 99-110
-
-
Huntzinger, E.1
Izaurralde, E.2
-
6
-
-
24344494340
-
How microRNAs control cell division, differentiation and death
-
Miska EA. How microRNAs control cell division, differentiation and death. Current opinion in genetics & development 2005, 15(5):563-568
-
(2005)
Current opinion in genetics & development
, vol.15
, Issue.5
, pp. 563-568
-
-
Miska, E.A.1
-
7
-
-
33644499134
-
Cell-type-specific signatures of microRNAs on target mRNA expression
-
Sood P, Krek A, Zavolan M, Macino G, Rajewsky N. Cell-type-specific signatures of microRNAs on target mRNA expression. Proceedings of the National Academy of Sciences of the United States of America 2006, 103(8):2746-2751
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.8
, pp. 2746-2751
-
-
Sood, P.1
Krek, A.2
Zavolan, M.3
Macino, G.4
Rajewsky, N.5
-
8
-
-
31744432337
-
The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation
-
Chen JF, Mandel EM, Thomson JM, Wu Q, Callis TE, Hammond SM, Conlon FL, Wang DZ. The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. Nature genetics 2006, 38(2):228-233
-
(2006)
Nature genetics
, vol.38
, Issue.2
, pp. 228-233
-
-
Chen, J.F.1
Mandel, E.M.2
Thomson, J.M.3
Wu, Q.4
Callis, T.E.5
Hammond, S.M.6
Conlon, F.L.7
Wang, D.Z.8
-
9
-
-
22444437609
-
Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis
-
Zhao Y, Samal E, Srivastava D. Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis. Nature 2005, 436(7048):214-220
-
(2005)
Nature
, vol.436
, Issue.7048
, pp. 214-220
-
-
Zhao, Y.1
Samal, E.2
Srivastava, D.3
-
10
-
-
33846045953
-
Principles of microRNA regulation of a human cellular signaling network
-
Cui Q, Yu Z, Purisima EO, Wang E. Principles of microRNA regulation of a human cellular signaling network. Molecular systems biology 2006, 2:46.
-
(2006)
Molecular systems biology
, vol.2
, pp. 46
-
-
Cui, Q.1
Yu, Z.2
Purisima, E.O.3
Wang, E.4
-
11
-
-
9144270691
-
A pancreatic islet-specific microRNA regulates insulin secretion
-
Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, et al. A pancreatic islet-specific microRNA regulates insulin secretion. Nature 2004, 432(7014):226-230
-
(2004)
Nature
, vol.432
, Issue.7014
, pp. 226-230
-
-
Poy, M.N.1
Eliasson, L.2
Krutzfeldt, J.3
Kuwajima, S.4
Ma, X.5
Macdonald, P.E.6
Pfeffer, S.7
Tuschl, T.8
Rajewsky, N.9
Rorsman, P.10
-
12
-
-
34948829119
-
The muscle-specific microRNAs miR-1 and miR-133 produce opposing effects on apoptosis by targeting HSP60, HSP70 and caspase-9 in cardiomyocytes
-
Xu C, Lu Y, Pan Z, Chu W, Luo X, Lin H, Xiao J, Shan H, Wang Z, Yang B. The muscle-specific microRNAs miR-1 and miR-133 produce opposing effects on apoptosis by targeting HSP60, HSP70 and caspase-9 in cardiomyocytes. Journal of cell science 2007, 120(Pt 17):3045-3052.
-
(2007)
Journal of cell science
, vol.120
, pp. 3045-3052
-
-
Xu, C.1
Lu, Y.2
Pan, Z.3
Chu, W.4
Luo, X.5
Lin, H.6
Xiao, J.7
Shan, H.8
Wang, Z.9
Yang, B.10
-
13
-
-
81355142141
-
Non-coding RNAs in human disease
-
Esteller M. Non-coding RNAs in human disease. Nature reviews Genetics 2011, 12(12):861-874
-
(2011)
Nature reviews Genetics
, vol.12
, Issue.12
, pp. 861-874
-
-
Esteller, M.1
-
14
-
-
75549092303
-
TransmiR: a transcription factor-microRNA regulation database
-
Wang J, Lu M, Qiu C, Cui Q. TransmiR: a transcription factor-microRNA regulation database. Nucleic acids research 2010, (38 Database):D119-122.
-
(2010)
Nucleic acids research
, Issue.38 Database
, pp. D119-122
-
-
Wang, J.1
Lu, M.2
Qiu, C.3
Cui, Q.4
-
15
-
-
77956520986
-
CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse
-
Friard O, Re A, Taverna D, De Bortoli M, Cora D. CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse. BMC bioinformatics 2010, 11:435
-
(2010)
BMC bioinformatics
, vol.11
, pp. 435
-
-
Friard, O.1
Re, A.2
Taverna, D.3
De Bortoli, M.4
Cora, D.5
-
16
-
-
84876566914
-
ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data
-
Yang JH, Li JH, Jiang S, Zhou H, Qu LH. ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic acids research 2013, (41 Database):D177-187.
-
(2013)
Nucleic acids research
, Issue.41 Database
, pp. D177-187
-
-
Yang, J.H.1
Li, J.H.2
Jiang, S.3
Zhou, H.4
Qu, L.H.5
-
17
-
-
0842321501
-
MicroRNA targets in Drosophila
-
Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS. MicroRNA targets in Drosophila. Genome biology 2003, 5(1):R1
-
(2003)
Genome biology
, vol.5
, Issue.1
, pp. R1
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
18
-
-
80455154984
-
Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs
-
Garcia DM, Baek D, Shin C, Bell GW, Grimson A, Bartel DP. Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs. Nature structural & molecular biology 2011, 18(10):1139-1146
-
(2011)
Nature structural & molecular biology
, vol.18
, Issue.10
, pp. 1139-1146
-
-
Garcia, D.M.1
Baek, D.2
Shin, C.3
Bell, G.W.4
Grimson, A.5
Bartel, D.P.6
-
19
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek A, Grun D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, MacMenamin P, da Piedade I, Gunsalus KC, Stoffel M, et al. Combinatorial microRNA target predictions. Nature genetics 2005, 37(5):495-500
-
(2005)
Nature genetics
, vol.37
, Issue.5
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.J.6
MacMenamin, P.7
da Piedade, I.8
Gunsalus, K.C.9
Stoffel, M.10
-
20
-
-
67749132423
-
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
-
Chi SW, Zang JB, Mele A, Darnell RB. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature 2009, 460(7254):479-486.
-
(2009)
Nature
, vol.460
, Issue.7254
, pp. 479-486
-
-
Chi, S.W.1
Zang, J.B.2
Mele, A.3
Darnell, R.B.4
-
21
-
-
84876935138
-
Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding
-
Helwak A, Kudla G, Dudnakova T, Tollervey D. Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. Cell 2013, 153(3):654-665
-
(2013)
Cell
, vol.153
, Issue.3
, pp. 654-665
-
-
Helwak, A.1
Kudla, G.2
Dudnakova, T.3
Tollervey, D.4
-
22
-
-
84866929613
-
Integrative analysis of gene and miRNA expression profiles with transcription factor-miRNA feed-forward loops identifies regulators in human cancers
-
Yan Z, Shah PK, Amin SB, Samur MK, Huang N, Wang X, Misra V, Ji H, Gabuzda D, Li C. Integrative analysis of gene and miRNA expression profiles with transcription factor-miRNA feed-forward loops identifies regulators in human cancers. Nucleic acids research 2012, 40(17):e135
-
(2012)
Nucleic acids research
, vol.40
, Issue.17
, pp. e135
-
-
Yan, Z.1
Shah, P.K.2
Amin, S.B.3
Samur, M.K.4
Huang, N.5
Wang, X.6
Misra, V.7
Ji, H.8
Gabuzda, D.9
Li, C.10
-
23
-
-
77954276691
-
MAGIA, a web-based tool for miRNA and Genes Integrated Analysis
-
Sales G, Coppe A, Bisognin A, Biasiolo M, Bortoluzzi S, Romualdi C. MAGIA, a web-based tool for miRNA and Genes Integrated Analysis. Nucleic acids research 2010, (38 Web Server):W352-359.
-
(2010)
Nucleic acids research
, Issue.38 Web Server
, pp. W352-359
-
-
Sales, G.1
Coppe, A.2
Bisognin, A.3
Biasiolo, M.4
Bortoluzzi, S.5
Romualdi, C.6
-
24
-
-
84864443057
-
MAGIA(2): from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update)
-
Bisognin A, Sales G, Coppe A, Bortoluzzi S, Romualdi C. MAGIA(2): from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update). Nucleic acids research 2012, (40 Web Server):W13-21.
-
(2012)
Nucleic acids research
, Issue.40 Web Server
, pp. W13-21
-
-
Bisognin, A.1
Sales, G.2
Coppe, A.3
Bortoluzzi, S.4
Romualdi, C.5
-
25
-
-
79959997653
-
MirConnX: condition-specific mRNA-microRNA network integrator
-
Huang GT, Athanassiou C, Benos PV. mirConnX: condition-specific mRNA-microRNA network integrator. Nucleic acids research 2011, (39 Web Server):W416-423.
-
(2011)
Nucleic acids research
, Issue.39 Web Server
, pp. W416-423
-
-
Huang, G.T.1
Athanassiou, C.2
Benos, P.V.3
-
26
-
-
84936758160
-
Bioinformatics Method to Predict Two Regulation Mechanism: TF-miRNA-mRNA and lncRNA-miRNA-mRNA in Pancreatic Cancer
-
Ye S, Yang L, Zhao X, Song W, Wang W, Zheng S. Bioinformatics Method to Predict Two Regulation Mechanism: TF-miRNA-mRNA and lncRNA-miRNA-mRNA in Pancreatic Cancer. Cell biochemistry and biophysics 2014,
-
(2014)
Cell biochemistry and biophysics
-
-
Ye, S.1
Yang, L.2
Zhao, X.3
Song, W.4
Wang, W.5
Zheng, S.6
-
27
-
-
33645075443
-
MiR-122 regulation of lipid metabolism revealed by in vivo antisense targeting
-
Esau C, Davis S, Murray SF, Yu XX, Pandey SK, Pear M, Watts L, Booten SL, Graham M, McKay R, et al. miR-122 regulation of lipid metabolism revealed by in vivo antisense targeting. Cell metabolism 2006, 3(2):87-98
-
(2006)
Cell metabolism
, vol.3
, Issue.2
, pp. 87-98
-
-
Esau, C.1
Davis, S.2
Murray, S.F.3
Yu, X.X.4
Pandey, S.K.5
Pear, M.6
Watts, L.7
Booten, S.L.8
Graham, M.9
McKay, R.10
-
28
-
-
28444469246
-
Silencing of microRNAs in vivo with 'antagomirs'
-
Krutzfeldt J, Rajewsky N, Braich R, Rajeev KG, Tuschl T, Manoharan M, Stoffel M. Silencing of microRNAs in vivo with 'antagomirs'. Nature 2005, 438(7068):685-689
-
(2005)
Nature
, vol.438
, Issue.7068
, pp. 685-689
-
-
Krutzfeldt, J.1
Rajewsky, N.2
Braich, R.3
Rajeev, K.G.4
Tuschl, T.5
Manoharan, M.6
Stoffel, M.7
-
29
-
-
33749479908
-
Downregulation of miR-122 in the rodent and human hepatocellular carcinomas
-
Kutay H, Bai S, Datta J, Motiwala T, Pogribny I, Frankel W, Jacob ST, Ghoshal K. Downregulation of miR-122 in the rodent and human hepatocellular carcinomas. Journal of cellular biochemistry 2006, 99(3):671-678
-
(2006)
Journal of cellular biochemistry
, vol.99
, Issue.3
, pp. 671-678
-
-
Kutay, H.1
Bai, S.2
Datta, J.3
Motiwala, T.4
Pogribny, I.5
Frankel, W.6
Jacob, S.T.7
Ghoshal, K.8
-
30
-
-
66149114383
-
MicroRNA-122, a tumor suppressor microRNA that regulates intrahepatic metastasis of hepatocellular carcinoma
-
Tsai WC, Hsu PW, Lai TC, Chau GY, Lin CW, Chen CM, Lin CD, Liao YL, Wang JL, Chau YP, et al. MicroRNA-122, a tumor suppressor microRNA that regulates intrahepatic metastasis of hepatocellular carcinoma. Hepatology 2009, 49(5):1571-1582
-
(2009)
Hepatology
, vol.49
, Issue.5
, pp. 1571-1582
-
-
Tsai, W.C.1
Hsu, P.W.2
Lai, T.C.3
Chau, G.Y.4
Lin, C.W.5
Chen, C.M.6
Lin, C.D.7
Liao, Y.L.8
Wang, J.L.9
Chau, Y.P.10
-
31
-
-
84864761391
-
Essential metabolic, anti-inflammatory, and anti-tumorigenic functions of miR-122 in liver
-
Hsu SH, Wang B, Kota J, Yu J, Costinean S, Kutay H, Yu L, Bai S, La Perle K, Chivukula RR, et al. Essential metabolic, anti-inflammatory, and anti-tumorigenic functions of miR-122 in liver. The Journal of clinical investigation 2012, 122(8):2871-2883
-
(2012)
The Journal of clinical investigation
, vol.122
, Issue.8
, pp. 2871-2883
-
-
Hsu, S.H.1
Wang, B.2
Kota, J.3
Yu, J.4
Costinean, S.5
Kutay, H.6
Yu, L.7
Bai, S.8
La Perle, K.9
Chivukula, R.R.10
-
32
-
-
84864773072
-
MicroRNA-122 plays a critical role in liver homeostasis and hepatocarcinogenesis
-
Tsai WC, Hsu SD, Hsu CS, Lai TC, Chen SJ, Shen R, Huang Y, Chen HC, Lee CH, Tsai TF, et al. MicroRNA-122 plays a critical role in liver homeostasis and hepatocarcinogenesis. The Journal of clinical investigation 2012, 122(8):2884-2897
-
(2012)
The Journal of clinical investigation
, vol.122
, Issue.8
, pp. 2884-2897
-
-
Tsai, W.C.1
Hsu, S.D.2
Hsu, C.S.3
Lai, T.C.4
Chen, S.J.5
Shen, R.6
Huang, Y.7
Chen, H.C.8
Lee, C.H.9
Tsai, T.F.10
-
33
-
-
77957954445
-
Liver-enriched transcription factors regulate microRNA-122 that targets CUTL1 during liver development
-
Xu H, He JH, Xiao ZD, Zhang QQ, Chen YQ, Zhou H, Qu LH. Liver-enriched transcription factors regulate microRNA-122 that targets CUTL1 during liver development. Hepatology 2010, 52(4):1431-1442
-
(2010)
Hepatology
, vol.52
, Issue.4
, pp. 1431-1442
-
-
Xu, H.1
He, J.H.2
Xiao, Z.D.3
Zhang, Q.Q.4
Chen, Y.Q.5
Zhou, H.6
Qu, L.H.7
-
34
-
-
85009954022
-
MicroRNA-122 regulates hypoxia-inducible factor-1 and vimentin in hepatocytes and correlates with fibrosis in diet-induced steatohepatitis
-
Csak T, Bala S, Lippai D, Satishchandran A, Catalano D, Kodys K, Szabo G. microRNA-122 regulates hypoxia-inducible factor-1 and vimentin in hepatocytes and correlates with fibrosis in diet-induced steatohepatitis. Liver international: official journal of the International Association for the Study of the Liver 2014,
-
(2014)
Liver international: official journal of the International Association for the Study of the Liver
-
-
Csak, T.1
Bala, S.2
Lippai, D.3
Satishchandran, A.4
Catalano, D.5
Kodys, K.6
Szabo, G.7
-
35
-
-
77952425747
-
Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells
-
Stadtfeld M, Apostolou E, Akutsu H, Fukuda A, Follett P, Natesan S, Kono T, Shioda T, Hochedlinger K. Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells. Nature 2010, 465(7295):175-181
-
(2010)
Nature
, vol.465
, Issue.7295
, pp. 175-181
-
-
Stadtfeld, M.1
Apostolou, E.2
Akutsu, H.3
Fukuda, A.4
Follett, P.5
Natesan, S.6
Kono, T.7
Shioda, T.8
Hochedlinger, K.9
-
36
-
-
84935039129
-
Upregulation of the microRNA cluster at the Dlk1-Dio3 locus in lung adenocarcinoma
-
Valdmanis PN, Roy-Chaudhuri B, Kim HK, Sayles LC, Zheng Y, Chuang CH, Caswell DR, Chu K, Zhang Y, Winslow MM, et al. Upregulation of the microRNA cluster at the Dlk1-Dio3 locus in lung adenocarcinoma. Oncogene 2013,
-
(2013)
Oncogene
-
-
Valdmanis, P.N.1
Roy-Chaudhuri, B.2
Kim, H.K.3
Sayles, L.C.4
Zheng, Y.5
Chuang, C.H.6
Caswell, D.R.7
Chu, K.8
Zhang, Y.9
Winslow, M.M.10
-
37
-
-
80052245751
-
DLK1-DIO3 genomic imprinted microRNA cluster at 14q32.2 defines a stemlike subtype of hepatocellular carcinoma associated with poor survival
-
Luk JM, Burchard J, Zhang C, Liu AM, Wong KF, Shek FH, Lee NP, Fan ST, Poon RT, Ivanovska I, et al. DLK1-DIO3 genomic imprinted microRNA cluster at 14q32.2 defines a stemlike subtype of hepatocellular carcinoma associated with poor survival. The Journal of biological chemistry 2011, 286(35):30706-30713
-
(2011)
The Journal of biological chemistry
, vol.286
, Issue.35
, pp. 30706-30713
-
-
Luk, J.M.1
Burchard, J.2
Zhang, C.3
Liu, A.M.4
Wong, K.F.5
Shek, F.H.6
Lee, N.P.7
Fan, S.T.8
Poon, R.T.9
Ivanovska, I.10
-
38
-
-
84897512906
-
Loss of imprinting at the 14q32 domain is associated with microRNA overexpression in acute promyelocytic leukemia
-
Manodoro F, Marzec J, Chaplin T, Miraki-Moud F, Moravcsik E, Jovanovic JV, Wang J, Iqbal S, Taussig D, Grimwade D, et al. Loss of imprinting at the 14q32 domain is associated with microRNA overexpression in acute promyelocytic leukemia. Blood 2014, 123(13):2066-2074
-
(2014)
Blood
, vol.123
, Issue.13
, pp. 2066-2074
-
-
Manodoro, F.1
Marzec, J.2
Chaplin, T.3
Miraki-Moud, F.4
Moravcsik, E.5
Jovanovic, J.V.6
Wang, J.7
Iqbal, S.8
Taussig, D.9
Grimwade, D.10
-
39
-
-
84861935924
-
MicroRNA-182 downregulates metastasis suppressor 1 and contributes to metastasis of hepatocellular carcinoma
-
Wang J, Li J, Shen J, Wang C, Yang L, Zhang X. MicroRNA-182 downregulates metastasis suppressor 1 and contributes to metastasis of hepatocellular carcinoma. BMC cancer 2012, 12:227
-
(2012)
BMC cancer
, vol.12
, pp. 227
-
-
Wang, J.1
Li, J.2
Shen, J.3
Wang, C.4
Yang, L.5
Zhang, X.6
-
40
-
-
84926248562
-
Epigenetic modification of MiR-429 promotes liver tumour-initiating cell properties by targeting Rb binding protein 4
-
Li L, Tang J, Zhang B, Yang W, Liugao M, Wang R, Tan Y, Fan J, Chang Y, Fu J, et al. Epigenetic modification of MiR-429 promotes liver tumour-initiating cell properties by targeting Rb binding protein 4. Gut 2014,
-
(2014)
Gut
-
-
Li, L.1
Tang, J.2
Zhang, B.3
Yang, W.4
Liugao, M.5
Wang, R.6
Tan, Y.7
Fan, J.8
Chang, Y.9
Fu, J.10
-
41
-
-
79551541594
-
The progression of liver fibrosis is related with overexpression of the miR-199 and 200 families
-
Murakami Y, Toyoda H, Tanaka M, Kuroda M, Harada Y, Matsuda F, Tajima A, Kosaka N, Ochiya T, Shimotohno K. The progression of liver fibrosis is related with overexpression of the miR-199 and 200 families. PloS one 2011, 6(1):e16081
-
(2011)
PloS one
, vol.6
, Issue.1
, pp. e16081
-
-
Murakami, Y.1
Toyoda, H.2
Tanaka, M.3
Kuroda, M.4
Harada, Y.5
Matsuda, F.6
Tajima, A.7
Kosaka, N.8
Ochiya, T.9
Shimotohno, K.10
-
42
-
-
84889680701
-
Modulation of epigenetic regulators and cell fate decisions by miRNAs
-
Gruber AJ, Zavolan M. Modulation of epigenetic regulators and cell fate decisions by miRNAs. Epigenomics 2013, 5(6):671-683
-
(2013)
Epigenomics
, vol.5
, Issue.6
, pp. 671-683
-
-
Gruber, A.J.1
Zavolan, M.2
-
43
-
-
84876109498
-
Role of CTCF in the regulation of microRNA expression
-
Saito Y, Saito H. Role of CTCF in the regulation of microRNA expression. Frontiers in genetics 2012, 3:186.
-
(2012)
Frontiers in genetics
, vol.3
, pp. 186
-
-
Saito, Y.1
Saito, H.2
-
44
-
-
4444261501
-
The binding sites for the chromatin insulator protein CTCF map to DNA methylation-free domains genome-wide
-
Mukhopadhyay R, Yu W, Whitehead J, Xu J, Lezcano M, Pack S, Kanduri C, Kanduri M, Ginjala V, Vostrov A, et al. The binding sites for the chromatin insulator protein CTCF map to DNA methylation-free domains genome-wide. Genome research 2004, 14(8):1594-1602
-
(2004)
Genome research
, vol.14
, Issue.8
, pp. 1594-1602
-
-
Mukhopadhyay, R.1
Yu, W.2
Whitehead, J.3
Xu, J.4
Lezcano, M.5
Pack, S.6
Kanduri, C.7
Kanduri, M.8
Ginjala, V.9
Vostrov, A.10
-
45
-
-
38449101120
-
Integration of biological networks and gene expression data using Cytoscape
-
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, et al. Integration of biological networks and gene expression data using Cytoscape. Nature protocols 2007, 2(10):2366-2382
-
(2007)
Nature protocols
, vol.2
, Issue.10
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
Landys, N.5
Workman, C.6
Christmas, R.7
Avila-Campilo, I.8
Creech, M.9
Gross, B.10
-
46
-
-
84869054051
-
A travel guide to Cytoscape plugins
-
Saito R, Smoot ME, Ono K, Ruscheinski J, Wang PL, Lotia S, Pico AR, Bader GD, Ideker T. A travel guide to Cytoscape plugins. Nature methods 2012, 9(11):1069-1076
-
(2012)
Nature methods
, vol.9
, Issue.11
, pp. 1069-1076
-
-
Saito, R.1
Smoot, M.E.2
Ono, K.3
Ruscheinski, J.4
Wang, P.L.5
Lotia, S.6
Pico, A.R.7
Bader, G.D.8
Ideker, T.9
-
47
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome research 2003, 13(11):2498-2504
-
(2003)
Genome research
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
48
-
-
79551587720
-
Cytoscape 2.8: new features for data integration and network visualization
-
Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 2011, 27(3):431-432
-
(2011)
Bioinformatics
, vol.27
, Issue.3
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
49
-
-
84891796290
-
MiRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions
-
Hsu SD, Tseng YT, Shrestha S, Lin YL, Khaleel A, Chou CH, Chu CF, Huang HY, Lin CM, Ho SY, et al. miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions. Nucleic acids research 2014, (42 Database):D78-85.
-
(2014)
Nucleic acids research
, Issue.42 Database
, pp. D78-85
-
-
Hsu, S.D.1
Tseng, Y.T.2
Shrestha, S.3
Lin, Y.L.4
Khaleel, A.5
Chou, C.H.6
Chu, C.F.7
Huang, H.Y.8
Lin, C.M.9
Ho, S.Y.10
-
50
-
-
84862176128
-
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support
-
Vergoulis T, Vlachos IS, Alexiou P, Georgakilas G, Maragkakis M, Reczko M, Gerangelos S, Koziris N, Dalamagas T, Hatzigeorgiou AG. TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. Nucleic acids research 2012, (40 Database):D222-229.
-
(2012)
Nucleic acids research
, Issue.40 Database
, pp. D222-229
-
-
Vergoulis, T.1
Vlachos, I.S.2
Alexiou, P.3
Georgakilas, G.4
Maragkakis, M.5
Reczko, M.6
Gerangelos, S.7
Koziris, N.8
Dalamagas, T.9
Hatzigeorgiou, A.G.10
-
51
-
-
84891818924
-
StarBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
-
Li JH, Liu S, Zhou H, Qu LH, Yang JH. starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic acids research 2014, (42 Database):D92-97.
-
(2014)
Nucleic acids research
, Issue.42 Database
, pp. D92-97
-
-
Li, J.H.1
Liu, S.2
Zhou, H.3
Qu, L.H.4
Yang, J.H.5
-
52
-
-
78751689926
-
Investigation of post-transcriptional gene regulatory networks associated with autism spectrum disorders by microRNA expression profiling of lymphoblastoid cell lines
-
Sarachana T, Zhou R, Chen G, Manji HK, Hu VW. Investigation of post-transcriptional gene regulatory networks associated with autism spectrum disorders by microRNA expression profiling of lymphoblastoid cell lines. Genome medicine 2010, 2(4):23
-
(2010)
Genome medicine
, vol.2
, Issue.4
, pp. 23
-
-
Sarachana, T.1
Zhou, R.2
Chen, G.3
Manji, H.K.4
Hu, V.W.5
-
53
-
-
84879326696
-
Identifying dysfunctional miRNA-mRNA regulatory modules by inverse activation, cofunction, and high interconnection of target genes: a case study of glioblastoma
-
Xiao Y, Ping Y, Fan H, Xu C, Guan J, Zhao H, Li Y, Lv Y, Jin Y, Wang L, et al. Identifying dysfunctional miRNA-mRNA regulatory modules by inverse activation, cofunction, and high interconnection of target genes: a case study of glioblastoma. Neuro-oncology 2013, 15(7):818-828.
-
(2013)
Neuro-oncology
, vol.15
, Issue.7
, pp. 818-828
-
-
Xiao, Y.1
Ping, Y.2
Fan, H.3
Xu, C.4
Guan, J.5
Zhao, H.6
Li, Y.7
Lv, Y.8
Jin, Y.9
Wang, L.10
-
54
-
-
70350000602
-
TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples
-
Bandyopadhyay S, Mitra R. TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples. Bioinformatics 2009, 25(20):2625-2631
-
(2009)
Bioinformatics
, vol.25
, Issue.20
, pp. 2625-2631
-
-
Bandyopadhyay, S.1
Mitra, R.2
-
55
-
-
84900426153
-
Integrated analysis of differential miRNA and mRNA expression profiles in human radioresistant and radiosensitive nasopharyngeal carcinoma cells
-
Li XH, Qu JQ, Yi H, Zhang PF, Yi HM, Wan XX, He QY, Ye X, Yuan L, Zhu JF, et al. Integrated analysis of differential miRNA and mRNA expression profiles in human radioresistant and radiosensitive nasopharyngeal carcinoma cells. PloS one 2014, 9(1):e87767
-
(2014)
PloS one
, vol.9
, Issue.1
, pp. e87767
-
-
Li, X.H.1
Qu, J.Q.2
Yi, H.3
Zhang, P.F.4
Yi, H.M.5
Wan, X.X.6
He, Q.Y.7
Ye, X.8
Yuan, L.9
Zhu, J.F.10
-
56
-
-
84894571860
-
Causal analysis approaches in Ingenuity Pathway Analysis
-
Kramer A, Green J, Pollard J, Tugendreich S. Causal analysis approaches in Ingenuity Pathway Analysis. Bioinformatics 2014, 30(4):523-530
-
(2014)
Bioinformatics
, vol.30
, Issue.4
, pp. 523-530
-
-
Kramer, A.1
Green, J.2
Pollard, J.3
Tugendreich, S.4
-
57
-
-
84874604550
-
FASTX-Toolkit: FASTQ/A short-reads pre-processing tools
-
FASTX-Toolkit: FASTQ/A short-reads pre-processing tools. , http://hannonlab.cshl.edu/fastx_toolkit/
-
-
-
-
58
-
-
84870420933
-
NcPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data
-
Chen CJ, Servant N, Toedling J, Sarazin A, Marchais A, Duvernois-Berthet E, Cognat V, Colot V, Voinnet O, Heard E, et al. ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data. Bioinformatics 2012, 28(23):3147-3149
-
(2012)
Bioinformatics
, vol.28
, Issue.23
, pp. 3147-3149
-
-
Chen, C.J.1
Servant, N.2
Toedling, J.3
Sarazin, A.4
Marchais, A.5
Duvernois-Berthet, E.6
Cognat, V.7
Colot, V.8
Voinnet, O.9
Heard, E.10
-
59
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome biology 2009, 10(3):R25
-
(2009)
Genome biology
, vol.10
, Issue.3
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
60
-
-
0347755643
-
The microRNA Registry
-
Griffiths-Jones S. The microRNA Registry. Nucleic acids research 2004, (32 Database):D109-111.
-
(2004)
Nucleic acids research
, Issue.32 Database
, pp. D109-111
-
-
Griffiths-Jones, S.1
-
61
-
-
84891818318
-
MiRBase: annotating high confidence microRNAs using deep sequencing data
-
Kozomara A, Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic acids research 2014, (42 Database):D68-73.
-
(2014)
Nucleic acids research
, Issue.42 Database
, pp. D68-73
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
62
-
-
84874266637
-
Rfam 11.0: 10 years of RNA families
-
Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A. Rfam 11.0: 10 years of RNA families. Nucleic acids research 2013, (41 Database):D226-232.
-
(2013)
Nucleic acids research
, Issue.41 Database
, pp. D226-232
-
-
Burge, S.W.1
Daub, J.2
Eberhardt, R.3
Tate, J.4
Barquist, L.5
Nawrocki, E.P.6
Eddy, S.R.7
Gardner, P.P.8
Bateman, A.9
-
63
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N. Discovering microRNAs from deep sequencing data using miRDeep. Nature biotechnology 2008, 26(4):407-415
-
(2008)
Nature biotechnology
, vol.26
, Issue.4
, pp. 407-415
-
-
Friedlander, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
Knespel, S.6
Rajewsky, N.7
-
64
-
-
84855293838
-
MiRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
-
Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic acids research 2012, 40(1):37-52
-
(2012)
Nucleic acids research
, vol.40
, Issue.1
, pp. 37-52
-
-
Friedlander, M.R.1
Mackowiak, S.D.2
Li, N.3
Chen, W.4
Rajewsky, N.5
|