-
1
-
-
80052933429
-
DNA demethylation dynamics
-
Bhutani N, Burns DM, Blau HM. 2011. DNA demethylation dynamics. Cell 146: 866-872.
-
(2011)
Cell
, vol.146
, pp. 866-872
-
-
Bhutani, N.1
Burns, D.M.2
Blau, H.M.3
-
2
-
-
79955004702
-
Advances in DNA methylation: 5-hydroxymethylcytosine revisited
-
Dahl C, Gronbaek K, Guldberg P. 2011. Advances in DNA methylation: 5-hydroxymethylcytosine revisited. Clin. Chim. Acta 412: 831-836.
-
(2011)
Clin. Chim. Acta
, vol.412
, pp. 831-836
-
-
Dahl, C.1
Gronbaek, K.2
Guldberg, P.3
-
3
-
-
0036955299
-
Comparative analysis of baseline 8-oxo-7,8-dihydroguanine in mammalian cell DNA, by different methods in different laboratories: an approach to consensus
-
ESCODD (European Standards Committee on Oxidative DNA Damage). 2002. Comparative analysis of baseline 8-oxo-7, 8-dihydroguanine in mammalian cell DNA, by different methods in different laboratories: an approach to consensus. Carcinogenesis 23: 2129-2133.
-
(2002)
Carcinogenesis
, vol.23
, pp. 2129-2133
-
-
-
4
-
-
7044264899
-
Oxidative DNA damage and DNA repair enzyme expression are inversely related in murine models of fatty liver disease
-
Gao D, Wei C, Chen L, Huang J, Yang S, Diehl AM. 2004. Oxidative DNA damage and DNA repair enzyme expression are inversely related in murine models of fatty liver disease. Am. J. Physiol. Gastrointest. Liver Physiol. 287: G1070-G1077.
-
(2004)
Am. J. Physiol. Gastrointest. Liver Physiol.
, vol.287
, pp. G1070-G1077
-
-
Gao, D.1
Wei, C.2
Chen, L.3
Huang, J.4
Yang, S.5
Diehl, A.M.6
-
5
-
-
84860388901
-
Active DNA demethylation by oxidation and repair
-
Gong Z, Zhu JK. 2011. Active DNA demethylation by oxidation and repair. Cell Res. 21: 1649-1651.
-
(2011)
Cell Res.
, vol.21
, pp. 1649-1651
-
-
Gong, Z.1
Zhu, J.K.2
-
7
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
-
He YF, Li BZ, Li Z, Liu P, Wang Y, Tang Q, Ding J, Jia Y, Chen Z, Li L, et al. 2011. Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 333: 1303-1307.
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.F.1
Li, B.Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
Tang, Q.6
Ding, J.7
Jia, Y.8
Chen, Z.9
Li, L.10
-
8
-
-
0031889780
-
DNA oxidation matters: the HPLC-electrochemical detection assay of 8-oxo-deoxyguanosine and 8-oxo-guanine
-
Helbock HJ, Beckman KB, Shigenaga MK, Walter PB, Woodall AA, Yeo HC, Ames BN. 1998. DNA oxidation matters: the HPLC-electrochemical detection assay of 8-oxo-deoxyguanosine and 8-oxo-guanine. Proc. Natl. Acad. Sci. U. S. A. 95: 288-293.
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 288-293
-
-
Helbock, H.J.1
Beckman, K.B.2
Shigenaga, M.K.3
Walter, P.B.4
Woodall, A.A.5
Yeo, H.C.6
Ames, B.N.7
-
9
-
-
77956189495
-
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
-
Ito S, D'Alessio AC, Taranova OV, Hong K, Sowers LC, Zhang Y. 2010. Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 466: 1129-1133.
-
(2010)
Nature
, vol.466
, pp. 1129-1133
-
-
Ito, S.1
D'Alessio, A.C.2
Taranova, O.V.3
Hong, K.4
Sowers, L.C.5
Zhang, Y.6
-
10
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
Ito S, Shen L, Dai Q, Wu SC, Collins LB, Swenberg JA, He C, Zhang Y. 2011. Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 333: 1300-1303.
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
Swenberg, J.A.6
He, C.7
Zhang, Y.8
-
11
-
-
0242610894
-
Mechanisms of DNA damage, DNA hypomethylation, and tumor progression in the folate/methyl-deficient rat model of hepatocarcinogenesis
-
James SJ, Pogribny IP, Pogribna M, Miller BJ, Jernigan S, Melnyk S. 2003. Mechanisms of DNA damage, DNA hypomethylation, and tumor progression in the folate/methyl-deficient rat model of hepatocarcinogenesis. J. Nutr. 133: 3740S-3747S.
-
(2003)
J. Nutr.
, vol.133
, pp. 3740S-3747S
-
-
James, S.J.1
Pogribny, I.P.2
Pogribna, M.3
Miller, B.J.4
Jernigan, S.5
Melnyk, S.6
-
12
-
-
70350046301
-
Rethinking how DNA methylation patterns are maintained
-
Jones PA, Liang G. 2009. Rethinking how DNA methylation patterns are maintained. Nat. Rev. Genet. 10: 805-811.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 805-811
-
-
Jones, P.A.1
Liang, G.2
-
13
-
-
73949128483
-
Tissue factor-deficiency and protease activated receptor-1-deficiency reduce inflammation elicited by diet-induced steatohepatitis in mice
-
Luyendyk JP, Sullivan BP, Guo GL, Wang R. 2010. Tissue factor-deficiency and protease activated receptor-1-deficiency reduce inflammation elicited by diet-induced steatohepatitis in mice. Am. J. Pathol. 176: 177-186.
-
(2010)
Am. J. Pathol.
, vol.176
, pp. 177-186
-
-
Luyendyk, J.P.1
Sullivan, B.P.2
Guo, G.L.3
Wang, R.4
-
14
-
-
80053917872
-
Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites
-
Maiti A, Drohat AC. 2011. Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites. J. Biol. Chem. 286: 35334-35338.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 35334-35338
-
-
Maiti, A.1
Drohat, A.C.2
-
15
-
-
64349099799
-
Impact of 7,8-dihydro-8-oxoguanine on methylation of the CpG site by Dnmt3a
-
Maltseva DV, Baykov AA, Jeltsch A, Gromova ES. 2009. Impact of 7, 8-dihydro-8-oxoguanine on methylation of the CpG site by Dnmt3a. Biochemistry 48: 1361-1368.
-
(2009)
Biochemistry
, vol.48
, pp. 1361-1368
-
-
Maltseva, D.V.1
Baykov, A.A.2
Jeltsch, A.3
Gromova, E.S.4
-
16
-
-
84875056271
-
An improved mouse model that rapidly develops fibrosis in non-alcoholic steatohepatitis
-
Matsumoto M, Hada N, Sakamaki Y, Uno A, Shiga T, Tanaka C, Ito T, Katsume A, Sudoh M. 2013. An improved mouse model that rapidly develops fibrosis in non-alcoholic steatohepatitis. Int. J. Exp. Pathol. 94: 93-103.
-
(2013)
Int. J. Exp. Pathol.
, vol.94
, pp. 93-103
-
-
Matsumoto, M.1
Hada, N.2
Sakamaki, Y.3
Uno, A.4
Shiga, T.5
Tanaka, C.6
Ito, T.7
Katsume, A.8
Sudoh, M.9
-
17
-
-
33746303041
-
Comparison of the 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD)-induced CYP1A1 gene expression profile in lymphocytes from mice, rats, and humans: most potent induction in humans
-
Nohara K, Ao K, Miyamoto Y, Ito T, Suzuki T, Toyoshiba H, Tohyama C. 2006. Comparison of the 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD)-induced CYP1A1 gene expression profile in lymphocytes from mice, rats, and humans: most potent induction in humans. Toxicology 225: 204-213.
-
(2006)
Toxicology
, vol.225
, pp. 204-213
-
-
Nohara, K.1
Ao, K.2
Miyamoto, Y.3
Ito, T.4
Suzuki, T.5
Toyoshiba, H.6
Tohyama, C.7
-
18
-
-
79959584647
-
Global DNA methylation in the mouse liver is affected by methyl deficiency and arsenic in a sex-dependent manner
-
Nohara K, Baba T, Murai H, Kobayashi Y, Suzuki T, Tateishi Y, Matsumoto M, Nishimura N, Sano T. 2010. Global DNA methylation in the mouse liver is affected by methyl deficiency and arsenic in a sex-dependent manner. Arch. Toxicol. 85: 653-661.
-
(2010)
Arch. Toxicol.
, vol.85
, pp. 653-661
-
-
Nohara, K.1
Baba, T.2
Murai, H.3
Kobayashi, Y.4
Suzuki, T.5
Tateishi, Y.6
Matsumoto, M.7
Nishimura, N.8
Sano, T.9
-
19
-
-
79959584647
-
Global DNA methylation in the mouse liver is affected by methyl deficiency and arsenic in a sex-dependent manner
-
Nohara K, Baba T, Murai H, Kobayashi Y, Suzuki T, Tateishi Y, Matsumoto M, Nishimura N, Sano T. 2011. Global DNA methylation in the mouse liver is affected by methyl deficiency and arsenic in a sex-dependent manner. Arch. Toxicol. 85: 653-661.
-
(2011)
Arch. Toxicol.
, vol.85
, pp. 653-661
-
-
Nohara, K.1
Baba, T.2
Murai, H.3
Kobayashi, Y.4
Suzuki, T.5
Tateishi, Y.6
Matsumoto, M.7
Nishimura, N.8
Sano, T.9
-
20
-
-
1842614152
-
Genomic hypomethylation is specific for preneoplastic liver in folate/methyl deficient rats and does not occur in non-target tissues
-
Pogribny IP, James SJ, Jernigan S, Pogribna M. 2004. Genomic hypomethylation is specific for preneoplastic liver in folate/methyl deficient rats and does not occur in non-target tissues. Mutat. Res. 548: 53-59.
-
(2004)
Mutat. Res.
, vol.548
, pp. 53-59
-
-
Pogribny, I.P.1
James, S.J.2
Jernigan, S.3
Pogribna, M.4
-
21
-
-
70349093987
-
Role of DNA damage and alterations in cytosine DNA methylation in rat liver carcinogenesis induced by a methyl-deficient diet
-
Pogribny IP, Shpyleva SI, Muskhelishvili L, Bagnyukova TV, James SJ, Beland FA. 2009a. Role of DNA damage and alterations in cytosine DNA methylation in rat liver carcinogenesis induced by a methyl-deficient diet. Mutat. Res. 669: 56-62.
-
(2009)
Mutat. Res.
, vol.669
, pp. 56-62
-
-
Pogribny, I.P.1
Shpyleva, S.I.2
Muskhelishvili, L.3
Bagnyukova, T.V.4
James, S.J.5
Beland, F.A.6
-
22
-
-
67349089950
-
Hepatic epigenetic phenotype predetermines individual susceptibility to hepatic steatosis in mice fed a lipogenic methyl-deficient diet
-
Pogribny IP, Tryndyak VP, Bagnyukova TV, Melnyk S, Montgomery B, Ross SA, Latendresse JR, Rusyn I, Beland FA. 2009b. Hepatic epigenetic phenotype predetermines individual susceptibility to hepatic steatosis in mice fed a lipogenic methyl-deficient diet. J. Hepatol. 51: 176-186.
-
(2009)
J. Hepatol.
, vol.51
, pp. 176-186
-
-
Pogribny, I.P.1
Tryndyak, V.P.2
Bagnyukova, T.V.3
Melnyk, S.4
Montgomery, B.5
Ross, S.A.6
Latendresse, J.R.7
Rusyn, I.8
Beland, F.A.9
-
23
-
-
84855306289
-
Molecular alterations in hepatocarcinogenesis induced by dietary methyl deficiency
-
Pogribny IP, James SJ, Beland FA. 2012. Molecular alterations in hepatocarcinogenesis induced by dietary methyl deficiency. Mol. Nutr. Food Res. 56: 116-125.
-
(2012)
Mol. Nutr. Food Res.
, vol.56
, pp. 116-125
-
-
Pogribny, I.P.1
James, S.J.2
Beland, F.A.3
-
24
-
-
30944456159
-
Temporal correlation of pathology and DNA damage with gene expression in a choline-deficient model of rat liver injury
-
Powell CL, Kosyk O, Bradford BU, Parker JS, Lobenhofer EK, Denda A, Uematsu F, Nakae D, Rusyn I. 2005. Temporal correlation of pathology and DNA damage with gene expression in a choline-deficient model of rat liver injury. Hepatology 42: 1137-1147.
-
(2005)
Hepatology
, vol.42
, pp. 1137-1147
-
-
Powell, C.L.1
Kosyk, O.2
Bradford, B.U.3
Parker, J.S.4
Lobenhofer, E.K.5
Denda, A.6
Uematsu, F.7
Nakae, D.8
Rusyn, I.9
-
25
-
-
7444226882
-
Sex- and tissue-specific expression of maintenance and de novo DNA methyltransferases upon low dose X-irradiation in mice
-
Raiche J, Rodriguez-Juarez R, Pogribny I, Kovalchuk O. 2004. Sex- and tissue-specific expression of maintenance and de novo DNA methyltransferases upon low dose X-irradiation in mice. Biochem. Biophys. Res. Commun. 325: 39-47.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.325
, pp. 39-47
-
-
Raiche, J.1
Rodriguez-Juarez, R.2
Pogribny, I.3
Kovalchuk, O.4
-
26
-
-
17744417519
-
Cellular background level of 8-oxo-7,8-dihydro-2′-deoxyguanosine: an isotope based method to evaluate artefactual oxidation of DNA during its extraction and subsequent work-up
-
Ravanat JL, Douki T, Duez P, Gremaud E, Herbert K, Hofer T, Lasserre L, Saint-Pierre C, Favier A, Cadet J. 2002. Cellular background level of 8-oxo-7, 8-dihydro-2′-deoxyguanosine: an isotope based method to evaluate artefactual oxidation of DNA during its extraction and subsequent work-up. Carcinogenesis 23: 1911-1918.
-
(2002)
Carcinogenesis
, vol.23
, pp. 1911-1918
-
-
Ravanat, J.L.1
Douki, T.2
Duez, P.3
Gremaud, E.4
Herbert, K.5
Hofer, T.6
Lasserre, L.7
Saint-Pierre, C.8
Favier, A.9
Cadet, J.10
-
27
-
-
84655169624
-
Role of oxidative stress in the pathogenesis of nonalcoholic steatohepatitis
-
Rolo AP, Teodoro JS, Palmeira CM. 2012. Role of oxidative stress in the pathogenesis of nonalcoholic steatohepatitis. Free Radic. Biol. Med. 52: 59-69.
-
(2012)
Free Radic. Biol. Med.
, vol.52
, pp. 59-69
-
-
Rolo, A.P.1
Teodoro, J.S.2
Palmeira, C.M.3
-
28
-
-
34147174320
-
Significance of error-avoiding mechanisms for oxidative DNA damage in carcinogenesis
-
Tsuzuki T, Nakatsu Y, Nakabeppu Y. 2007. Significance of error-avoiding mechanisms for oxidative DNA damage in carcinogenesis. Cancer Sci. 98: 465-470.
-
(2007)
Cancer Sci.
, vol.98
, pp. 465-470
-
-
Tsuzuki, T.1
Nakatsu, Y.2
Nakabeppu, Y.3
-
29
-
-
0029001483
-
DNA adduct 8-hydroxyl-2′-deoxyguanosine (8-hydroxyguanine) affects function of human DNA methyltransferase
-
Turk PW, Laayoun A, Smith SS, Weitzman SA. 1995. DNA adduct 8-hydroxyl-2′-deoxyguanosine (8-hydroxyguanine) affects function of human DNA methyltransferase. Carcinogenesis 16: 1253-1255.
-
(1995)
Carcinogenesis
, vol.16
, pp. 1253-1255
-
-
Turk, P.W.1
Laayoun, A.2
Smith, S.S.3
Weitzman, S.A.4
-
30
-
-
84878388525
-
Oct4 and the small molecule inhibitor, SC1, regulates Tet2 expression in mouse embryonic stem cells
-
Wu Y, Guo Z, Liu Y, Tang B, Wang Y, Yang L, Du J, Zhang Y. 2012. Oct4 and the small molecule inhibitor, SC1, regulates Tet2 expression in mouse embryonic stem cells. Mol. Biol. Rep. 40: 2897-2906.
-
(2012)
Mol. Biol. Rep.
, vol.40
, pp. 2897-2906
-
-
Wu, Y.1
Guo, Z.2
Liu, Y.3
Tang, B.4
Wang, Y.5
Yang, L.6
Du, J.7
Zhang, Y.8
-
31
-
-
77952952816
-
Enhanced expression of Nrf2 in mice attenuates the fatty liver produced by a methionine- and choline-deficient diet
-
Zhang YK, Yeager RL, Tanaka Y, Klaassen CD. 2010. Enhanced expression of Nrf2 in mice attenuates the fatty liver produced by a methionine- and choline-deficient diet. Toxicol. Appl. Pharmacol. 245: 326-334.
-
(2010)
Toxicol. Appl. Pharmacol.
, vol.245
, pp. 326-334
-
-
Zhang, Y.K.1
Yeager, R.L.2
Tanaka, Y.3
Klaassen, C.D.4
-
32
-
-
73349104113
-
Active DNA demethylation mediated by DNA glycosylases
-
Zhu JK. 2009. Active DNA demethylation mediated by DNA glycosylases. Annu. Rev. Genet. 43: 143-166.
-
(2009)
Annu. Rev. Genet.
, vol.43
, pp. 143-166
-
-
Zhu, J.K.1
|