-
1
-
-
0033520969
-
Quality control by DNA repair
-
Lindahl, T., and Wood, R. D. (1999) Quality control by DNA repair. Science 286, 1897-1905.
-
(1999)
Science
, vol.286
, pp. 1897-1905
-
-
Lindahl, T.1
Wood, R.D.2
-
2
-
-
0038799736
-
Oxidative DNA damage: Mechanisms, mutation and disease
-
Cooke, M. S., Evans, M. D., Dizdaroglu, M., and Lunec, J. (2003) Oxidative DNA damage: Mechanisms, mutation and disease. FASEB J. 17, 1195-1214.
-
(2003)
FASEB J
, vol.17
, pp. 1195-1214
-
-
Cooke, M.S.1
Evans, M.D.2
Dizdaroglu, M.3
Lunec, J.4
-
3
-
-
9444258632
-
Role of radicals in DNA damage and cancer incidence
-
Valko, M., Izakovic, M., Mazur, M., Rhodes, C. J., and Telser, J. (2004) Role of radicals in DNA damage and cancer incidence. Mol. Cell. Biochem. 266, 37-56.
-
(2004)
Mol. Cell. Biochem
, vol.266
, pp. 37-56
-
-
Valko, M.1
Izakovic, M.2
Mazur, M.3
Rhodes, C.J.4
Telser, J.5
-
4
-
-
1442285090
-
In vitro and in vivo effects of oxidative damage to deoxyguanosine
-
Greenberg, M. M. (2004) In vitro and in vivo effects of oxidative damage to deoxyguanosine. Biochem. Soc. Trans. 32, 46-50.
-
(2004)
Biochem. Soc. Trans
, vol.32
, pp. 46-50
-
-
Greenberg, M.M.1
-
5
-
-
0037373455
-
Endogenous generation of reactive oxidants and electrophiles and their reactions with DNA and protein
-
Marnett, L. J., Riggins, J. N., and West, J. D. (2003) Endogenous generation of reactive oxidants and electrophiles and their reactions with DNA and protein. J. Clin. Invest. 111, 583-593.
-
(2003)
J. Clin. Invest
, vol.111
, pp. 583-593
-
-
Marnett, L.J.1
Riggins, J.N.2
West, J.D.3
-
6
-
-
0036245097
-
Molecular dynamic simulation of 7,8-dihydro-8- oxoguanine DNA
-
Ishida, H. (2002) Molecular dynamic simulation of 7,8-dihydro-8- oxoguanine DNA. J. Biomol. Struct. Dyn. 19, 839-851.
-
(2002)
J. Biomol. Struct. Dyn
, vol.19
, pp. 839-851
-
-
Ishida, H.1
-
7
-
-
0028799524
-
X-ray structure of a DNA decamer containing 7,8-dihydro-8-oxoguanine
-
Lipscomb, L. A., Peek, M. E., Morningstar, M. L., Verghis, S. M., Miller, E. M., Rich, A., Essigmann, J. M., and Williams, L. D. (1995) X-ray structure of a DNA decamer containing 7,8-dihydro-8-oxoguanine. Proc. Natl. Acad. Sci. U.S.A. 92, 719-723.
-
(1995)
Proc. Natl. Acad. Sci. U.S.A
, vol.92
, pp. 719-723
-
-
Lipscomb, L.A.1
Peek, M.E.2
Morningstar, M.L.3
Verghis, S.M.4
Miller, E.M.5
Rich, A.6
Essigmann, J.M.7
Williams, L.D.8
-
8
-
-
0025854831
-
NMR studies of a DNA containing 8-hydroxydeoxyguanosine
-
Oda, Y., Uesugi, S., Ikehara, M., Nishimura, S., Kawase, Y., Ishikawa, H., Inoue, H., and Ohtsuka, E. (1991) NMR studies of a DNA containing 8-hydroxydeoxyguanosine. Nucleic Acids Res. 19, 1407-1412.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 1407-1412
-
-
Oda, Y.1
Uesugi, S.2
Ikehara, M.3
Nishimura, S.4
Kawase, Y.5
Ishikawa, H.6
Inoue, H.7
Ohtsuka, E.8
-
9
-
-
33644626078
-
NMR structures of damaged DNA
-
Lukin, M., and de los Santos, C. (2006) NMR structures of damaged DNA. Chem. Rev. 106, 607-689.
-
(2006)
Chem. Rev
, vol.106
, pp. 607-689
-
-
Lukin, M.1
de los2
Santos, C.3
-
10
-
-
32444433202
-
Free radicals, metals and antioxidants in oxidative stress-induced cancer
-
Valko, M., Rhodes, C. J., Moncol, J., Izakovic, M., and Mazur, M. (2006) Free radicals, metals and antioxidants in oxidative stress-induced cancer. Chem.-Biol. Interact. 160, 1-40.
-
(2006)
Chem.-Biol. Interact
, vol.160
, pp. 1-40
-
-
Valko, M.1
Rhodes, C.J.2
Moncol, J.3
Izakovic, M.4
Mazur, M.5
-
11
-
-
0033605675
-
Induction of reversible complex between eukaryotic DNA topoisomerase I and DNA-containing oxidative base damages
-
Pourquier, P., Ueng, L.-M., Fertala, J., Wang, D., Park, H.-J., Essigmann, J. M., Bjornsti, M.-A., and Pommier, Y. (1999) Induction of reversible complex between eukaryotic DNA topoisomerase I and DNA-containing oxidative base damages. J. Biol. Chem. 274, 8516-8523.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 8516-8523
-
-
Pourquier, P.1
Ueng, L.-M.2
Fertala, J.3
Wang, D.4
Park, H.-J.5
Essigmann, J.M.6
Bjornsti, M.-A.7
Pommier, Y.8
-
12
-
-
0037125992
-
8-Oxoguanine rearranges the active site of human topoisomerase I
-
Lesher, D. T., Pommier, Y., Stewart, L., and Redinbo, M. R. (2002) 8-Oxoguanine rearranges the active site of human topoisomerase I. Proc. Natl. Acad. Sci. U.S.A. 99, 12102-12107.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A
, vol.99
, pp. 12102-12107
-
-
Lesher, D.T.1
Pommier, Y.2
Stewart, L.3
Redinbo, M.R.4
-
13
-
-
0033178246
-
Effect of oxidative DNA damage in promoter elements on transcription factor binding
-
Ghosh, R., and Mitchell, D. L. (1999) Effect of oxidative DNA damage in promoter elements on transcription factor binding. Nucleic Acids Res. 27, 3213-3218.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 3213-3218
-
-
Ghosh, R.1
Mitchell, D.L.2
-
14
-
-
0032831460
-
Effects of 8-oxo-7,8-dihydro-2′-deoxygua-nosine on the binding of the transcription factor Sp1 to its cognate target DNA sequence (GC box)
-
Ramon, O., Sauvaigo, S., Gasparutto, D., Faure, P., Favier, A., and Cadet, J. (1999) Effects of 8-oxo-7,8-dihydro-2′-deoxygua-nosine on the binding of the transcription factor Sp1 to its cognate target DNA sequence (GC box). Free Radical Res. 31, 217-229.
-
(1999)
Free Radical Res
, vol.31
, pp. 217-229
-
-
Ramon, O.1
Sauvaigo, S.2
Gasparutto, D.3
Faure, P.4
Favier, A.5
Cadet, J.6
-
15
-
-
4043112183
-
Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2)
-
Valinluck, V., Tsai, H.-H., Rogstad, D. K., Burdzy, A., Bird, A., and Sowers, L. C. (2004) Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2). Nucleic Acids Res. 32, 4100-4108.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 4100-4108
-
-
Valinluck, V.1
Tsai, H.-H.2
Rogstad, D.K.3
Burdzy, A.4
Bird, A.5
Sowers, L.C.6
-
16
-
-
0031000977
-
Influence of oxygen radical injury on DNA methylation
-
Cerda, S., and Weitzman, S. A. (1997) Influence of oxygen radical injury on DNA methylation. Mutat. Res. 386, 141-152.
-
(1997)
Mutat. Res
, vol.386
, pp. 141-152
-
-
Cerda, S.1
Weitzman, S.A.2
-
17
-
-
9744251005
-
Biochemistry and biology of mammalian DNA methyltransferases
-
Hermann, A., Gowher, H., and Jeltsch, A. (2004) Biochemistry and biology of mammalian DNA methyltransferases. Cell. Mol. Life Sci. 61, 2571-2587.
-
(2004)
Cell. Mol. Life Sci
, vol.61
, pp. 2571-2587
-
-
Hermann, A.1
Gowher, H.2
Jeltsch, A.3
-
18
-
-
29644436321
-
Molecular enzymology of mammalian DNA methyltransferases
-
Jeltsch, A. (2006) Molecular enzymology of mammalian DNA methyltransferases. Curr. Top. Microbiol. Immunol. 301, 203-225.
-
(2006)
Curr. Top. Microbiol. Immunol
, vol.301
, pp. 203-225
-
-
Jeltsch, A.1
-
19
-
-
33947310031
-
Environmental epigenomics and disease susceptibily
-
Jirtle, R. L., and Skinner, M. K. (2007) Environmental epigenomics and disease susceptibily. Nat. Rev. Genet. 8, 253-262.
-
(2007)
Nat. Rev. Genet
, vol.8
, pp. 253-262
-
-
Jirtle, R.L.1
Skinner, M.K.2
-
20
-
-
33947315736
-
Cancer epigenomics: DNA methylomes and histone-modification maps
-
Esteller, M. (2007) Cancer epigenomics: DNA methylomes and histone-modification maps. Nat. Rev. Genet. 8, 286-298.
-
(2007)
Nat. Rev. Genet
, vol.8
, pp. 286-298
-
-
Esteller, M.1
-
21
-
-
0029001483
-
DNA adduct 8-hydroxyl-2′-deoxyguanosine (8-hydroxyguanine) affects function of human DNA methyltransferase
-
Turk, P. W., Laayoun, A., Smith, S. S., and Weitzman, S. A. (1995) DNA adduct 8-hydroxyl-2′-deoxyguanosine (8-hydroxyguanine) affects function of human DNA methyltransferase. Carcinogenesis 16, 1253-1255.
-
(1995)
Carcinogenesis
, vol.16
, pp. 1253-1255
-
-
Turk, P.W.1
Laayoun, A.2
Smith, S.S.3
Weitzman, S.A.4
-
22
-
-
0028047769
-
Free radical adducts induce alterations in DNA cytosine methylation
-
Weitzman, S. A., Turk, P. W., Milkowski, D. H., and Kozlowski, K. (1994) Free radical adducts induce alterations in DNA cytosine methylation. Proc. Natl. Acad. Sci. U.S.A. 91, 1261-1264.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A
, vol.91
, pp. 1261-1264
-
-
Weitzman, S.A.1
Turk, P.W.2
Milkowski, D.H.3
Kozlowski, K.4
-
23
-
-
12344292423
-
Effects of benzo[a]pyrene-deoxyguanosine lesions on DNA methylation catalyzed by EcoRII DNA methyltransferase and on DNA cleavage effected by EcoRII restriction endonuclease
-
Baskunov, V. B., Subach, F. V., Kolbanovskiy, A., Kolbanovskiy, M., Eremin, S. A., Johnson, F., Bonala, R., Geacintov, N. E., and Gromova, E. S. (2005) Effects of benzo[a]pyrene-deoxyguanosine lesions on DNA methylation catalyzed by EcoRII DNA methyltransferase and on DNA cleavage effected by EcoRII restriction endonuclease. Biochemistry 44, 1054-1066.
-
(2005)
Biochemistry
, vol.44
, pp. 1054-1066
-
-
Baskunov, V.B.1
Subach, F.V.2
Kolbanovskiy, A.3
Kolbanovskiy, M.4
Eremin, S.A.5
Johnson, F.6
Bonala, R.7
Geacintov, N.E.8
Gromova, E.S.9
-
24
-
-
0035933337
-
Enzymatic properties of recombinant Dnmt3a DNA methyltransferases from mouse: The enzyme modifies DNA in a non-processive manner and also methylates non-CpG sites
-
Gowher, H., and Jeltsch, A. (2001) Enzymatic properties of recombinant Dnmt3a DNA methyltransferases from mouse: The enzyme modifies DNA in a non-processive manner and also methylates non-CpG sites. J. Mol. Biol. 309, 1201-1208.
-
(2001)
J. Mol. Biol
, vol.309
, pp. 1201-1208
-
-
Gowher, H.1
Jeltsch, A.2
-
25
-
-
34249844128
-
Purification and site-directed mutagenesis of DNA methyltransferase SssI
-
Darii, M. V., Kirsanova, O. V., Drutsa, V. L., Kochetkov, S. N., and Gromova, E. S. (2007) Purification and site-directed mutagenesis of DNA methyltransferase SssI. Mol. Biol. (Moscow) 41, 121-129.
-
(2007)
Mol. Biol. (Moscow)
, vol.41
, pp. 121-129
-
-
Darii, M.V.1
Kirsanova, O.V.2
Drutsa, V.L.3
Kochetkov, S.N.4
Gromova, E.S.5
-
26
-
-
0022910040
-
The effects of base analogue substitutions on the methylation by the EcoRI modification methylase of octadeoxyribonucleotides containing modified EcoRI recognition sequences
-
Brennan, C. A., Van Cleve, M. D., and Gumport, R. I. (1986) The effects of base analogue substitutions on the methylation by the EcoRI modification methylase of octadeoxyribonucleotides containing modified EcoRI recognition sequences. J. Biol. Chem. 261, 7279-7286.
-
(1986)
J. Biol. Chem
, vol.261
, pp. 7279-7286
-
-
Brennan, C.A.1
Van Cleve, M.D.2
Gumport, R.I.3
-
27
-
-
3042615203
-
2-Pyrimidinone as a probe for studying the EcoRII DNA methyltransferase-substrate interaction
-
Subach, O. M., Khoroshaev, A. V., Gerasimov, D. N., Baskunov, V. B., Shchyolkina, A. K., and Gromova, E. S. (2004) 2-Pyrimidinone as a probe for studying the EcoRII DNA methyltransferase-substrate interaction. Eur. J. Biochem. 271, 2391-2399.
-
(2004)
Eur. J. Biochem
, vol.271
, pp. 2391-2399
-
-
Subach, O.M.1
Khoroshaev, A.V.2
Gerasimov, D.N.3
Baskunov, V.B.4
Shchyolkina, A.K.5
Gromova, E.S.6
-
28
-
-
0027178166
-
The cysteine conserved among DNA cytosine methylases is required for methyl transfer, but not for specific DNA binding
-
Wyszynski, M. W., Gabbara, S., Kubareva, E. A., Romanova, E. A., Oretskaya, T. S., Gromova, E. S., Shabarova, Z. A., and Bhagwat, A. S. (1993) The cysteine conserved among DNA cytosine methylases is required for methyl transfer, but not for specific DNA binding. Nucleic Acids Res. 21, 295-301.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 295-301
-
-
Wyszynski, M.W.1
Gabbara, S.2
Kubareva, E.A.3
Romanova, E.A.4
Oretskaya, T.S.5
Gromova, E.S.6
Shabarova, Z.A.7
Bhagwat, A.S.8
-
29
-
-
0028990179
-
M.HhaI binds tightly to substrates containing mismatches at the target base
-
Klimasauskas, S., and Roberts, R. J. (1995) M.HhaI binds tightly to substrates containing mismatches at the target base. Nucleic Acids Res. 23, 1388-1395.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 1388-1395
-
-
Klimasauskas, S.1
Roberts, R.J.2
-
30
-
-
0029736819
-
Methyalation inhibitors can increase the rate of cytosine deamination by (cytosine-5)-DNA methyltransferase
-
Zingg, J.-M., Shen, J.-C., Yang, A. S., Rapoport, H., and Jones, P. A. (1996) Methyalation inhibitors can increase the rate of cytosine deamination by (cytosine-5)-DNA methyltransferase. Nucleic Acids Res. 24, 3267-3275.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3267-3275
-
-
Zingg, J.-M.1
Shen, J.-C.2
Yang, A.S.3
Rapoport, H.4
Jones, P.A.5
-
31
-
-
0027093283
-
High frequency mutagenesis by a DNA methyltransferase
-
Shen, J. C., III, and Jones, P. A. (1992) High frequency mutagenesis by a DNA methyltransferase. Cell 71, 1073-1080.
-
(1992)
Cell
, vol.71
, pp. 1073-1080
-
-
Shen III, J.C.1
Jones, P.A.2
-
32
-
-
0027977001
-
Cytosine deaminations catalyzed by DNA cytosine methyltransferases are unlikely to be the major cause of mutational hot spots at sites of cytosine methylation in Escherichia coli
-
Wyszynski, M., Gabbara, S., and Bhagwat, A. S. (1994) Cytosine deaminations catalyzed by DNA cytosine methyltransferases are unlikely to be the major cause of mutational hot spots at sites of cytosine methylation in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 91, 1574-1578.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A
, vol.91
, pp. 1574-1578
-
-
Wyszynski, M.1
Gabbara, S.2
Bhagwat, A.S.3
-
33
-
-
34548603504
-
Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation
-
Jia, D., Jurkowska, R. Z., Zhang, X., Jeltsch, A., and Cheng, X. (2007) Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation. Nature 449, 248-251.
-
(2007)
Nature
, vol.449
, pp. 248-251
-
-
Jia, D.1
Jurkowska, R.Z.2
Zhang, X.3
Jeltsch, A.4
Cheng, X.5
-
34
-
-
40049094942
-
Mammalian DNA methyltransferases: A structural perspective
-
Cheng, X., and Blumenthal, R. (2008) Mammalian DNA methyltransferases: A structural perspective. Structure 16, 341-350.
-
(2008)
Structure
, vol.16
, pp. 341-350
-
-
Cheng, X.1
Blumenthal, R.2
-
35
-
-
0004262303
-
-
3rd ed, pp, Longman Group Ltd, London
-
Dixon, M., Webb, E. C., Thorne, C. J. R., and Tipton, K. F. (1979) Enzymes, 3rd ed., pp 140-148, Longman Group Ltd., London.
-
(1979)
Enzymes
, pp. 140-148
-
-
Dixon, M.1
Webb, E.C.2
Thorne, C.J.R.3
Tipton, K.F.4
-
36
-
-
17144369504
-
Mechanism of stimulation of catalytic activity of Dnmt3a and Dnmt3b DNA-(cytosine-C5)-methyltransferases by Dnmt3L
-
Gowher, H., Liebert, K., Hermann, A., Xu, G., and Jeltsch, A. (2005) Mechanism of stimulation of catalytic activity of Dnmt3a and Dnmt3b DNA-(cytosine-C5)-methyltransferases by Dnmt3L. J. Biol. Chem. 280, 13341-13348.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 13341-13348
-
-
Gowher, H.1
Liebert, K.2
Hermann, A.3
Xu, G.4
Jeltsch, A.5
-
37
-
-
0022351206
-
Procaryotic and eucaryotic traits of DNA methylation in spiroplasmas (mycoplasmas)
-
Nur, I., Szyf, M., Razin, A., Glaser, G., Rottem, S., and Razin, S. (1985) Procaryotic and eucaryotic traits of DNA methylation in spiroplasmas (mycoplasmas). J. Bacteriol. 164, 19-24.
-
(1985)
J. Bacteriol
, vol.164
, pp. 19-24
-
-
Nur, I.1
Szyf, M.2
Razin, A.3
Glaser, G.4
Rottem, S.5
Razin, S.6
-
38
-
-
8444240478
-
Homology modeling of the CG-specific DNA methyltransferase SssI and its complexes with DNA and AdoHcy
-
Koudan, E. V., Bujnicki, J. M., and Gromova, E. S. (2004) Homology modeling of the CG-specific DNA methyltransferase SssI and its complexes with DNA and AdoHcy. J. Biomol. Struct. Dyn. 22, 339-345.
-
(2004)
J. Biomol. Struct. Dyn
, vol.22
, pp. 339-345
-
-
Koudan, E.V.1
Bujnicki, J.M.2
Gromova, E.S.3
-
39
-
-
0028908131
-
-
Renbaum, P., and Razin, A. (1995) Footprint analysis of M.SssI and M.HhaI methyltransferases reveals extensive interactions with the substrate DNA backbone. J. Mol. Biol. 248, 19-26.
-
Renbaum, P., and Razin, A. (1995) Footprint analysis of M.SssI and M.HhaI methyltransferases reveals extensive interactions with the substrate DNA backbone. J. Mol. Biol. 248, 19-26.
-
-
-
-
40
-
-
0036415141
-
Dnmt3a and Dnmt1 functionally cooperate during methylation of DNA
-
Fatemi, M., Hermann, A., Gowher, H., and Jeltsch, A. (2002) Dnmt3a and Dnmt1 functionally cooperate during methylation of DNA. Eur. J. Biochem. 269, 4981-4984.
-
(2002)
Eur. J. Biochem
, vol.269
, pp. 4981-4984
-
-
Fatemi, M.1
Hermann, A.2
Gowher, H.3
Jeltsch, A.4
|