-
1
-
-
79954503621
-
Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage
-
Grindberg R, Ishoey T, Brinza D, Esquenazi E, Coates R, Liu W, Gerwick L, Dorrestein P, Pevzner P, Lasken R, Gerwick W: Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage. PLOS One 2011, 6(4):e18565.
-
(2011)
PLOS One
, vol.6
, Issue.4
-
-
Grindberg, R.1
Ishoey, T.2
Brinza, D.3
Esquenazi, E.4
Coates, R.5
Liu, W.6
Gerwick, L.7
Dorrestein, P.8
Pevzner, P.9
Lasken, R.10
Gerwick, W.11
-
2
-
-
80054732674
-
Efficient de novo assembly of single-cell bacterial genomes from short-read data sets
-
Chitsaz H, Yee-Greenbaum JL, Tesler G, Lombardo MJ, Dupont CL, Badger JH, Novotny M, Rusch DB, Fraser LJ, Gormley NA, Schulz-Trieglaff O, Smith GP, Evers DJ, Pevzner PA, Lasken RS: Efficient de novo assembly of single-cell bacterial genomes from short-read data sets. Nat Biotechnol 2011, 29:915-921.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 915-921
-
-
Chitsaz, H.1
Yee-Greenbaum, J.L.2
Tesler, G.3
Lombardo, M.J.4
Dupont, C.L.5
Badger, J.H.6
Novotny, M.7
Rusch, D.B.8
Fraser, L.J.9
Gormley, N.A.10
Schulz-Trieglaff, O.11
Smith, G.P.12
Evers, D.J.13
Pevzner, P.A.14
Lasken, R.S.15
-
3
-
-
45849153461
-
Genomic sequencing of single microbial cells from environmental samples
-
Ishoey T, Woyke T, Stepanauskas R, Novotny M, Lasken R: Genomic sequencing of single microbial cells from environmental samples. Current Opinion in Microbiology 2008, 11(3):198-204.
-
(2008)
Current Opinion in Microbiology
, vol.11
, Issue.3
, pp. 198-204
-
-
Ishoey, T.1
Woyke, T.2
Stepanauskas, R.3
Novotny, M.4
Lasken, R.5
-
4
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
Gill S, Pop M, Deboy R, Eckburg P, Turnbaugh P, Samuel B, Gordon J, Relman D, Fraser-Liggett C, Nelson K: Metagenomic analysis of the human distal gut microbiome. Science 2006, 312(5778):1355-1359.
-
(2006)
Science
, vol.312
, Issue.5778
, pp. 1355-1359
-
-
Gill, S.1
Pop, M.2
Deboy, R.3
Eckburg, P.4
Turnbaugh, P.5
Samuel, B.6
Gordon, J.7
Relman, D.8
Fraser-Liggett, C.9
Nelson, K.10
-
5
-
-
67650021209
-
Microbial community profiling for human microbiome projects: tools, techniques, and challenges
-
Hamady M, Knight R: Microbial community profiling for human microbiome projects: tools, techniques, and challenges. Genome Res 2009, 19(7):1141-1152.
-
(2009)
Genome Res
, vol.19
, Issue.7
, pp. 1141-1152
-
-
Hamady, M.1
Knight, R.2
-
6
-
-
67650436176
-
Drug discovery and natural products: end of an era or an endless frontier?
-
Li J, Vederas J: Drug discovery and natural products: end of an era or an endless frontier? Science 2009, 325(5937):161-165.
-
(2009)
Science
, vol.325
, Issue.5937
, pp. 161-165
-
-
Li, J.1
Vederas, J.2
-
7
-
-
78649358717
-
Quake: quality-aware detection and correction of sequencing errors
-
Kelley DR, Schatz MC, Salzberg SL: Quake: quality-aware detection and correction of sequencing errors. Genome Biology 2010, 11(11):R116.
-
(2010)
Genome Biology
, vol.11
, Issue.11
-
-
Kelley, D.R.1
Schatz, M.C.2
Salzberg, S.L.3
-
8
-
-
79959485321
-
Error correction of highthroughput sequencing datasets with non-uniform coverage
-
Medvedev P, Scott E, Kakaradov B, Pevzner P: Error correction of highthroughput sequencing datasets with non-uniform coverage. Bioinformatics 2011, 27(13):i137-41.
-
(2011)
Bioinformatics
, vol.27
, Issue.13
, pp. i137-i141
-
-
Medvedev, P.1
Scott, E.2
Kakaradov, B.3
Pevzner, P.4
-
9
-
-
39049156065
-
Short read fragment assembly of bacterial genomes
-
Chaisson MJ, Pevzner P: Short read fragment assembly of bacterial genomes. Genome Research 2008, 18:324-330.
-
(2008)
Genome Research
, vol.18
, pp. 324-330
-
-
Chaisson, M.J.1
Pevzner, P.2
-
10
-
-
84860771820
-
SPAdes: a new genome assembler and its applications to single cell sequencing
-
Bankevich A, Nurk S, Antipov D, Gurevich A, Dvorkin M, Kulikov A, Lesin V, Nikolenko S, Pham S, Prjibelski A, Pyshkin A, Sirotkin A, Vyahhi N, Tesler G, Alekseyev M, Pevzner P: SPAdes: a new genome assembler and its applications to single cell sequencing. Journal of Computational Biology 2012, 19(5):455-477.
-
(2012)
Journal of Computational Biology
, vol.19
, Issue.5
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.4
Dvorkin, M.5
Kulikov, A.6
Lesin, V.7
Nikolenko, S.8
Pham, S.9
Prjibelski, A.10
Pyshkin, A.11
Sirotkin, A.12
Vyahhi, N.13
Tesler, G.14
Alekseyev, M.15
Pevzner, P.16
-
11
-
-
77951226627
-
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
-
Cock P, Fields C, Goto N, Heuer M, Rice P: The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res 2010, 38(6):1767-1771.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.6
, pp. 1767-1771
-
-
Cock, P.1
Fields, C.2
Goto, N.3
Heuer, M.4
Rice, P.5
-
13
-
-
0000120766
-
Estimating the dimension of a model
-
Schwarz G: Estimating the dimension of a model. Annals of Statistics 1978, 6:461-464.
-
(1978)
Annals of Statistics
, vol.6
, pp. 461-464
-
-
Schwarz, G.1
-
14
-
-
84875547534
-
QUAST: Quality Assessment for Genome Assemblies
-
[Submitted].
-
Gurevich A, Saveliev V, Vyahhi N, Tesler G: QUAST: Quality Assessment for Genome Assemblies. 2012, [Submitted].
-
(2012)
-
-
Gurevich, A.1
Saveliev, V.2
Vyahhi, N.3
Tesler, G.4
-
15
-
-
12344332552
-
Reducing storage requirements for biological sequence comparison
-
Roberts M, Hayes W, Hunt BR, Mount SM, Yorke JA: Reducing storage requirements for biological sequence comparison. Bioinformatics 2004, 20(18):3363-3369.
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3363-3369
-
-
Roberts, M.1
Hayes, W.2
Hunt, B.R.3
Mount, S.M.4
Yorke, J.A.5
|