Genomic characterization of Listeria monocytogenes strains involved in a multistate listeriosis outbreak associated with Cantaloupe in US

PLoS ONE

Volumn 7, Issue 7, 2012, Pages

  Laksanalamai, Pongpan ^a   Joseph, Lavin A ^b   Silk, Benjamin J ^b   Burall, Laurel S ^a   Tarr, Cheryl L ^b   Gerner Smidt, Peter ^b   Datta, Atin R ^a  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^b NATIONAL CENTER FOR EMERGING AND ZOONOTIC INFECTIOUS DISEASES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA;

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CANTALOUPE; DEATH; DNA MICROARRAY; DNA SEQUENCE; EPIDEMIC; LISTERIA MONOCYTOGENES; LISTERIOSIS; NONHUMAN; PULSED FIELD GEL ELECTROPHORESIS; SEROTYPE; SPONTANEOUS ABORTION; UNITED STATES;

DISEASE OUTBREAKS; FRUIT; HUMANS; LISTERIA MONOCYTOGENES; LISTERIOSIS; UNITED STATES;

CUCUMIS MELO; LISTERIA; LISTERIA MONOCYTOGENES;

EID: 84864435945     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0042448     Document Type: Article

References (50)

1. Datta AR, (2003) "Listeria monocytogenes". In: International handbook of foodborne pathogens. Miliotis MD, Bier JW, editors. New York: Marcel Dekker, Inc. pp. 105-121.
2. Wagner M, McLauchlin J, (2008) Biology. In: Handbook of Listeria monocytogenes. Dongyou L, editor. Boca Raton: CRC Press. pp. 3-25.
3. Gaschignard J, Levy C, Romain O, Cohen R, Bingen E, et al. (2011) Neonatal Bacterial Meningitis: 444 Cases in 7 Years. Pediatr Infect Dis J 30: 212-217.
4. Lamont RF, Sobel J, Mazaki-Tovi S, Kusanovic JP, Vaisbuch E, et al. (2011) Listeriosis in human pregnancy: a systematic review. J Perinat Med 39: 227-236.
5. Scallan E, Hoekstra RM, Angulo FJ, Tauxe RV, Widdowson MA, et al. (2011) Foodborne illness acquired in the United States- major pathogens. EmergInfectDis 17: 7-15.
6. Ooi ST, Lorber B, (2005) Gastroenteritis due to Listeria monocytogenes. ClinInfectDis 40: 1327-1332.
7. Schuppler M, Loessner MJ, (2010) The Opportunistic Pathogen Listeria monocytogenes: Pathogenicity and Interaction with the Mucosal Immune System. Int J Inflam 2010: 704321.
8. Foodborne illness outbreak database: Searchable database. Available: http://www.outbreakdatabase.com. Accessed 2012 July 10.
9. Bruno JC Jr, Freitag NE, (2011) Listeria monocytogenes adapts to long-term stationary phase survival without compromising bacterial virulence. FEMS Microbiol Lett 323: 171-179.
10. Jadhav S, Bhave M, Palombo EA, (2012) Methods used for the detection and subtyping of Listeria monocytogenes. J Microbiol Methods.
11. Voidarou C, Vassos D, Rozos G, Alexopoulos A, Plessas S, et al. (2011) Microbial challenges of poultry meat production. Anaerobe 17: 341-343.
12. O'Connor L, O'Leary M, Leonard N, Godinho M, O'Reilly C, et al. (2010) The characterization of Listeria spp. isolated from food products and the food-processing environment. Lett Appl Microbiol 51: 490-498.
13. Reina LD, Fleming HP, Breidt F Jr, (2002) Bacterial contamination of cucumber fruit through adhesion. J Food Prot 65: 1881-1887.
14. Iturriaga MH, Arvizu-Medrano SM, Escartin EF, (2002) Behavior of Listeria monocytogenes in avocado pulp and processed guacamole. J Food Prot 65: 1745-1749.
15. Varma JK, Samuel MC, Marcus R, Hoekstra RM, Medus C, et al. (2007) Listeria monocytogenes infection from foods prepared in a commercial establishment: a case-control study of potential sources of sporadic illness in the United States. Clin Infect Dis 44: 521-528.
16. Cosgrove S, Cronquist A, Wright G, Ghosh T, Vogt R, et al. (2011) Multistate outbreak of listeriosis associated with Jensen Farms cantaloupe-United States, August-September 2011. MMWR Morb Mortal Wkly Rep 60: 1357-1358.
17. Listeriosis (Listeria infection): Multistate Outbreak of Listeriosis Linked to Whole Cantaloupes from Jensen Farms, Colorado (2011) http://www.cdc.gov/listeria/outbreaks/cantaloupes-jensen-farms/index.html. Accessed 2012 July 10.
18. Information on the Recalled Jensen Farms Whole Cantaloupes (2011) Available: http://www.fda.gov/Food/FoodSafety/CORENetwork/ucm272372.htm#final. Accessed 2012 July 10.
19. Cheng Y, Siletzky RM, Kathariou S, (2008) Genomic division/lineages, epidemic clones and population structure. In: Handbook of Listeria monocytogenes. Dongyou L, editor. Boca Raton: CRC Press. pp. 337-357.
20. Kathariou S, Graves L, Buchrieser C, Glaser P, Siletzky RM, et al. (2006) Involvement of closely related strains of a new clonal group of Listeria monocytogenes in the 1998-99 and 2002 multistate outbreaks of foodborne listeriosis in the United States. Foodborne Pathog Dis 3: 292-302.
21. Mead PS, Dunne EF, Graves L, Wiedmann M, Patrick M, et al. (2006) Nationwide outbreak of listeriosis due to contaminated meat. Epidemiol Infect 134: 744-751.
22. Orsi RH, den Bakker HC, Wiedmann M, (2011) Listeria monocytogenes lineages: Genomics, evolution, ecology, and phenotypic characteristics. Int J Med Microbiol 301: 79-96.
23. Pan Y, Breidt F Jr, Kathariou S, (2009) Competition of Listeria monocytogenes serotype 1/2a and 4b strains in mixed-culture biofilms. Appl Environ Microbiol 75: 5846-5852.
24. Revazishvili T, Kotetishvili M, Stine OC, Kreger AS, Morris JG Jr, et al. (2004) Comparative analysis of multilocus sequence typing and pulsed-field gel electrophoresis for characterizing Listeria monocytogenes strains isolated from environmental and clinical sources. J Clin Microbiol 42: 276-285.
25. Jackson SA, Kotewicz ML, Patel IR, Lacher DW, Gangiredla J, et al. (2012) Rapid Genomic-Scale Analysis of Escherichia coli O104:H4 by Using High-Resolution Alternative Methods to Next-Generation Sequencing. Appl Environ Microbiol 78: 1601-1605.
26. Jackson SA, Mammel MK, Patel IR, Mays T, Albert TJ, et al. (2007) Interrogating genomic diversity of E. coli O157:H7 using DNA tiling arrays. Forensic SciInt 168: 183-199.
27. Jackson SA, Patel IR, Barnaba T, LeClerc JE, Cebula TA, (2011) Investigating the global genomic diversity of Escherichia coli using a multi-genome DNA microarray platform with novel gene prediction strategies. BMCGenomics 12: 349.
28. Laksanalamai P, Jackson SA, Mammel MK, Datta AR, (2012) High Density Microarray Analysis Reveals New Insights into Genetic Footprints of Listeria monocytogenes Strains Involved in Listeriosis Outbreaks. PLoS One 7: e32896.
29. Bacteriological Analytical Manual (BAM). Available: http://www.fda.gov/Food/ScienceResearch/LaboratoryMethods/BacteriologicalAnalyticalManualBAM/default.htm. Accessed 2012 July 10.
30. Burall LS, Simpson AC, Datta AR, (2011) Evaluation of a Serotyping Scheme Using a Combination of an Antibody-Based Serogrouping Method and a Multiplex PCR Assay for Identifying the Major Serotypes of Listeria monocytogenes. JFood Prot 74: 403-409.
31. Halpin JL, Garrett NM, Ribot EM, Graves LM, Cooper KL, (2010) Re-evaluation, optimization, and multilaboratory validation of the PulseNet-standardized pulsed-field gel electrophoresis protocol for Listeria monocytogenes. FoodbornePathogDis 7: 293-298.
32. Gerner-Smidt P, Hise K, Kincaid J, Hunter S, Rolando S, et al. (2006) PulseNet USA: a five-year update. Foodborne Pathog Dis 3: 9-19.
33. Affymetrix (2005) Affymetrix GeneChip® Expression Analysis Technical Manual Available: http://media.affymetrix.com/support/downloads/manuals/expression_analysis_technical_manual.pdf. Accessed 2012 July 10.
34. Affymetrix (2002) Statistical Algorithms Description Document. Available: http://media.affymetrix.com/support/technical/whitepapers/sadd_whitepaper.pdf. Accessed 2012 July 10.
35. Hubbell E, Liu WM, Mei R, (2002) Robust estimators for expression analysis. Bioinformatics 18: 1585-1592.
36. Bolstad BM, Irizarry RA, Astrand M, Speed TP, (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
37. Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, et al. (2003) Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res 31: e15.
38. Irizarry RA, Wu Z, Jaffee HA, (2006) Comparison of Affymetrix GeneChip expression measures. Bioinformatics 22: 789-794.
39. Abu-Ali GS, Lacher DW, Wick LM, Qi W, Whittam TS, (2009) Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex. BMCGenomics 10: 296.
40. Huson DH, Bryant D, (2006) Application of phylogenetic networks in evolutionary studies. MolBiolEvol 23: 254-267.
41. Norton DM, Braden CR, (2007) Foodborne listeriosis. In: Listeria, listeriosis and food safety. Ryser ET, Marth EH, editors. Boca Raton: CRC Press. pp. 305-356.
42. Graves LM, Swaminathan B, (2001) PulseNet standardized protocol for subtyping Listeria monocytogenes by macrorestriction and pulsed-field gel electrophoresis. Int J Food Microbiol 65: 55-62.
43. Swaminathan B, Barrett TJ, Hunter SB, Tauxe RV, (2001) PulseNet: the molecular subtyping network for foodborne bacterial disease surveillance, United States. Emerg Infect Dis 7: 382-389.
44. Gottlieb SL, Newbern EC, Griffin PM, Graves LM, Hoekstra RM, et al. (2006) Multistate outbreak of Listeriosis linked to turkey deli meat and subsequent changes in US regulatory policy. Clin Infect Dis 42: 29-36.
45. Fleming DW, Cochi SL, MacDonald KL, Brondum J, Hayes PS, et al. (1985) Pasteurized milk as a vehicle of infection in an outbreak of listeriosis. N Engl J Med 312: 404-407.
46. Mellin JR, Cossart P, (2012) The non-coding RNA world of the bacterial pathogen Listeria monocytogenes. RNA Biol 9.
47. Toledo-Arana A, Dussurget O, Nikitas G, Sesto N, Guet-Revillet H, et al. (2009) The Listeria transcriptional landscape from saprophytism to virulence. Nature 459: 950-956.
48. Chen J, Novick RP, (2009) Phage-mediated intergeneric transfer of toxin genes. Science 323: 139-141.
49. Verghese B, Lok M, Wen J, Alessandria V, Chen Y, et al. (2011) comK prophage junction fragments as markers for Listeria monocytogenes genotypes unique to individual meat and poultry processing plants and a model for rapid niche-specific adaptation, biofilm formation, and persistence. ApplEnvironMicrobiol 77: 3279-3292.
50. Orsi RH, Borowsky ML, Lauer P, Young SK, Nusbaum C, et al. (2008) Short-term genome evolution of Listeria monocytogenes in a non-controlled environment. BMCGenomics 9: 539.