-
1
-
-
0029832218
-
RNA-catalysed RNA polymerization using nucleoside triphosphates
-
Ekland,E. H. and Bartel,D. P. (1996) RNA-catalysed RNA polymerization using nucleoside triphosphates. Nature, 382, 373-376.
-
(1996)
Nature
, vol.382
, pp. 373-376
-
-
Ekland, E.H.1
Bartel, D.P.2
-
2
-
-
13344270929
-
Synthesis of RNA oligomers on heterogeneous templates
-
Ertem,G. and Ferris,J. P. (1996) Synthesis of RNA oligomers on heterogeneous templates. Nature, 379, 238-240.
-
(1996)
Nature
, vol.379
, pp. 238-240
-
-
Ertem, G.1
Ferris, J.P.2
-
3
-
-
0020370504
-
Oligomerization of (guanosine 5-phosphor)-2-methylimidazolide on poly(C)
-
Inoue,T. and Orgel,L. E. (1982) Oligomerization of (guanosine 5-phosphor)-2-methylimidazolide on poly(C). An RNA polymerase model. J. Mol. Biol., 162, 201-217.
-
(1982)
An RNA Polymerase Model. J. Mol. Biol.
, vol.162
, pp. 201-217
-
-
Inoue, T.1
Orgel, L.E.2
-
4
-
-
0017294928
-
Nonenzymic joining of oligoadenylates on a polyuridylic acid template
-
Usher,D. A. and McHale,A. H. (1976) Nonenzymic joining of oligoadenylates on a polyuridylic acid template. Science, 192, 53-54.
-
(1976)
Science
, vol.192
, pp. 53-54
-
-
Usher, D.A.1
McHale, A.H.2
-
5
-
-
0000806492
-
Hydrolytic stability of helical RNA: A selective advantage for the natural 3,5-bond
-
Usher,D. A. and McHale,A. H. (1976) Hydrolytic stability of helical RNA: a selective advantage for the natural 3-,5-bond. Proc. Natl. Acad. Sci. U. S. A., 73, 1149-1153.
-
(1976)
Proc. Natl. Acad. Sci. U. S. A
, vol.73
, pp. 1149-1153
-
-
Usher, D.A.1
McHale, A.H.2
-
6
-
-
0026658134
-
Oligomerization of ribonucleotides on montmorillonite: Reaction of the 5-phosphorimidazolide of adenosine
-
Ferris,J. P. and Ertem,G. (1992) Oligomerization of ribonucleotides on montmorillonite: reaction of the 5-phosphorimidazolide of adenosine. Science, 257, 1387-1389.
-
(1992)
Science
, vol.257
, pp. 1387-1389
-
-
Ferris, J.P.1
Ertem, G.2
-
7
-
-
84876824197
-
Functional RNAs exhibit tolerance for non-heritable 2-5 versus 3-5 backbone heterogeneity
-
Engelhart,A. E., Powner,M. W. and Szostak,J. W. (2013) Functional RNAs exhibit tolerance for non-heritable 2-5 versus 3-5 backbone heterogeneity. Nat. Chem., 5, 390-394.
-
(2013)
Nat. Chem.
, vol.5
, pp. 390-394
-
-
Engelhart, A.E.1
Powner, M.W.2
Szostak, J.W.3
-
8
-
-
84876816785
-
Prebiotically plausible oligoribonucleotide ligation facilitated by chemoselective acetylation
-
Bowler,F. R., Chan,C. K., Duffy,C. D., Gerland,B., Islam,S., Powner,M. W., Sutherland,J. D. and Xu,J. (2013) Prebiotically plausible oligoribonucleotide ligation facilitated by chemoselective acetylation. Nat. Chem., 5, 383-389.
-
(2013)
Nat. Chem.
, vol.5
, pp. 383-389
-
-
Bowler, F.R.1
Chan, C.K.2
Duffy, C.D.3
Gerland, B.4
Islam, S.5
Powner, M.W.6
Sutherland, J.D.7
Xu, J.8
-
9
-
-
84888794643
-
Nonenzymatic template-directed RNA synthesis inside model protocells
-
Adamala,K. and Szostak,J. W. (2013) Nonenzymatic template-directed RNA synthesis inside model protocells. Science, 342, 1098-1100.
-
(2013)
Science
, vol.342
, pp. 1098-1100
-
-
Adamala, K.1
Szostak, J.W.2
-
10
-
-
80051958795
-
Evolution of functional nucleic acids in the presence of nonheritable backbone heterogeneity
-
Trevino,S. G., Zhang,N., Elenko,M. P., Luptak,A. and Szostak,J. W. (2011) Evolution of functional nucleic acids in the presence of nonheritable backbone heterogeneity. Proc. Natl. Acad. Sci. U. S. A., 108, 13492-13497.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A
, vol.108
, pp. 13492-13497
-
-
Trevino, S.G.1
Zhang, N.2
Elenko, M.P.3
Luptak, A.4
Szostak, J.W.5
-
12
-
-
0021666908
-
The RNA lariat: A new ring to the splicing of mRNA precursors
-
Keller,W. (1984) The RNA lariat: a new ring to the splicing of mRNA precursors. Cell, 39, 423-425.
-
(1984)
Cell
, vol.39
, pp. 423-425
-
-
Keller, W.1
-
13
-
-
84875425784
-
Structural principles of RNA catalysis in a 2-5 lariat-forming ribozyme
-
Carlomagno,T., Amata,I., Codutti,L., Falb,M., Fohrer,J., Masiewicz,P. and Simon,B. (2013) Structural principles of RNA catalysis in a 2-5 lariat-forming ribozyme. J. Am. Chem. Soc., 135, 4403-4411.
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 4403-4411
-
-
Carlomagno, T.1
Amata, I.2
Codutti, L.3
Falb, M.4
Fohrer, J.5
Masiewicz, P.6
Simon, B.7
-
14
-
-
0344413485
-
Crystal structure of the 2-specific and double-stranded RNA-activated interferon-induced antiviral protein 2-5-oligoadenylate synthetase
-
Hartmann,R., Justesen,J., Sarkar,S. N., Sen,G. C. and Yee,V. C. (2003) Crystal structure of the 2-specific and double-stranded RNA-activated interferon-induced antiviral protein 2-5-oligoadenylate synthetase. Mol. Cell, 12, 1173-1185.
-
(2003)
Mol. Cell
, vol.12
, pp. 1173-1185
-
-
Hartmann, R.1
Justesen, J.2
Sarkar, S.N.3
Sen, G.C.4
Yee, V.C.5
-
15
-
-
34347206680
-
The human 2-5 oligoadenylate synthetase family: Unique interferon-inducible enzymes catalyzing 2-5 instead of 3-5 phosphodiester bond formation
-
Hovanessian,A. G. and Justesen,J. (2007) The human 2-5-oligoadenylate synthetase family: unique interferon-inducible enzymes catalyzing 2-5 instead of 3-5 phosphodiester bond formation. Biochimie, 89, 779-788.
-
(2007)
Biochimie
, vol.89
, pp. 779-788
-
-
Hovanessian, A.G.1
Justesen, J.2
-
16
-
-
33646184968
-
The wild-type Schizosaccharomyces pombe mat1 imprint consists of two ribonucleotides
-
Vengrova,S. and Dalgaard,J. Z. (2006) The wild-type Schizosaccharomyces pombe mat1 imprint consists of two ribonucleotides. EMBO Rep., 7, 59-65.
-
(2006)
EMBO Rep.
, vol.7
, pp. 59-65
-
-
Vengrova, S.1
Dalgaard, J.Z.2
-
17
-
-
77950406088
-
Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases
-
Nick McElhinny,S. A.,Watts,B. E., Kumar,D., Watt,D. L., Lundstrom,E. B., Burgers,P. M., Johansson,E., Chabes,A. and Kunkel,T. A. (2010) Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases. Proc. Natl. Acad. Sci. U. S. A., 107, 4949-4954.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A
, vol.107
, pp. 4949-4954
-
-
Nick McElhinny, S.A.1
Watts, B.E.2
Kumar, D.3
Watt, D.L.4
Lundstrom, E.B.5
Burgers, P.M.6
Johansson, E.7
Chabes, A.8
Kunkel, T.A.9
-
18
-
-
84872485372
-
Ribonucleotide incorporation, proofreading and bypass by human DNA polymerase delta
-
Clausen,A. R., Zhang,S., Burgers,P. M., Lee,M. Y. and Kunkel,T. A. (2013) Ribonucleotide incorporation, proofreading and bypass by human DNA polymerase delta. DNA Repair (Amst), 12, 121-127.
-
(2013)
DNA Repair (Amst)
, vol.12
, pp. 121-127
-
-
Clausen, A.R.1
Zhang, S.2
Burgers, P.M.3
Lee, M.Y.4
Kunkel, T.A.5
-
19
-
-
84861578543
-
Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development
-
Reijns,M. A., Rabe,B., Rigby,R. E., Mill,P., Astell,K. R., Lettice,L. A., Boyle,S., Leitch,A., Keighren,M., Kilanowski,F. et al. (2012) Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development. Cell, 149, 1008-1022.
-
(2012)
Cell
, vol.149
, pp. 1008-1022
-
-
Reijns, M.A.1
Rabe, B.2
Rigby, R.E.3
Mill, P.4
Astell, K.R.5
Lettice, L.A.6
Boyle, S.7
Leitch, A.8
Keighren, M.9
Kilanowski, F.10
-
20
-
-
84871125561
-
Human DNA polymerase epsilon is able to efficiently extend from multiple consecutive ribonucleotides
-
Goksenin,A. Y., Zahurancik,W., LeCompte,K. G., Taggart,D. J., Suo,Z. and Pursell,Z. F. (2012) Human DNA polymerase epsilon is able to efficiently extend from multiple consecutive ribonucleotides. J. Biol. Chem., 287, 42675-42684.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 42675-42684
-
-
Goksenin, A.Y.1
Zahurancik, W.2
LeCompte, K.G.3
Taggart, D.J.4
Suo, Z.5
Pursell, Z.F.6
-
21
-
-
84921329939
-
How the misincorporation of ribonucleotides into genomic DNA can be both harmful and helpful to cells
-
Potenski,C. J. and Klein,H. L. (2014) How the misincorporation of ribonucleotides into genomic DNA can be both harmful and helpful to cells. Nucleic Acids Res., 42, 10226-10234.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 10226-10234
-
-
Potenski, C.J.1
Klein, H.L.2
-
22
-
-
1942535198
-
RNA polymerase II structure: From core to functional complexes
-
Cramer,P. (2004) RNA polymerase II structure: from core to functional complexes. Curr. Opin. Genet. Dev., 14, 218-226.
-
(2004)
Curr. Opin. Genet. Dev.
, vol.14
, pp. 218-226
-
-
Cramer, P.1
-
23
-
-
1242273889
-
Structure and function of RNA polymerase II
-
Cramer,P. (2004) Structure and function of RNA polymerase II. Adv. Protein Chem., 67, 1-42.
-
(2004)
Adv. Protein Chem.
, vol.67
, pp. 1-42
-
-
Cramer, P.1
-
24
-
-
36249026527
-
Molecular basis of RNA-dependent RNA polymerase II activity
-
Lehmann,E., Brueckner,F. and Cramer,P. (2007) Molecular basis of RNA-dependent RNA polymerase II activity. Nature, 450, 445-449.
-
(2007)
Nature
, vol.450
, pp. 445-449
-
-
Lehmann, E.1
Brueckner, F.2
Cramer, P.3
-
25
-
-
44449103640
-
The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin
-
Kaplan,C. D., Larsson,K.-M. and Kornberg,R. D. (2008) The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin. Mol. Cell, 30, 547-556.
-
(2008)
Mol. Cell
, vol.30
, pp. 547-556
-
-
Kaplan, C.D.1
Larsson, K.-M.2
Kornberg, R.D.3
-
26
-
-
44449094019
-
Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation
-
Kireeva,M. L., Nedialkov,Y. A., Cremona,G. H., Purtov,Y. A., Lubkowska,L.,Malagon,F., Burton,Z. F., Strathern,J. N. and Kashlev,M. (2008) Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation. Mol. Cell, 30, 557-566.
-
(2008)
Mol. Cell
, vol.30
, pp. 557-566
-
-
Kireeva, M.L.1
Nedialkov, Y.A.2
Cremona, G.H.3
Purtov, Y.A.4
Lubkowska, L.5
Malagon, F.6
Burton, Z.F.7
Strathern, J.N.8
Kashlev, M.9
-
27
-
-
77951973031
-
Stepwise mechanism for transcription fidelity
-
Yuzenkova,Y., Bochkareva,A., Tadigotla,V. R., Roghanian,M., Zorov,S., Severinov,K. and Zenkin,N. (2010) Stepwise mechanism for transcription fidelity. BMC Biol., 8, 54.
-
(2010)
BMC Biol.
, vol.8
, pp. 54
-
-
Yuzenkova, Y.1
Bochkareva, A.2
Tadigotla, V.R.3
Roghanian, M.4
Zorov, S.5
Severinov, K.6
Zenkin, N.7
-
28
-
-
0027761137
-
Multiple RNA polymerase conformations and GreA: Control of the fidelity of transcription
-
Erie,D. A., Hajiseyedjavadi,O., Young,M. C. and von Hippel,P. H. (1993) Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription. Science, 262, 867-873.
-
(1993)
Science
, vol.262
, pp. 867-873
-
-
Erie, D.A.1
Hajiseyedjavadi, O.2
Young, M.C.3
Von Hippel, P.H.4
-
29
-
-
84879498205
-
Understanding the Molecular Basis of RNA Polymerase II Transcription
-
Su Zhang,D. W. (2013) Understanding the Molecular Basis of RNA Polymerase II Transcription. Isr. J. Chem., 53, 442-449.
-
(2013)
Isr. J. Chem.
, vol.53
, pp. 442-449
-
-
Su Zhang, D.W.1
-
30
-
-
84905993090
-
Strand-specific (asymmetric) contribution of phosphodiester linkages on RNA polymerase II transcriptional efficiency and fidelity
-
Xu,L., Zhang,L., Chong,J., Xu,J., Huang,X. and Wang,D. (2014) Strand-specific (asymmetric) contribution of phosphodiester linkages on RNA polymerase II transcriptional efficiency and fidelity. Proc. Natl. Acad. Sci. U. S. A., 111, E3269-E3276.
-
(2014)
Proc. Natl. Acad. Sci. U. S. A
, vol.111
, pp. E3269-E3276
-
-
Xu, L.1
Zhang, L.2
Chong, J.3
Xu, J.4
Huang, X.5
Wang, D.6
-
31
-
-
33751235874
-
Structural basis of transcription: Role of the trigger loop in substrate specificity and catalysis
-
Wang,D., Bushnell,D. A., Westover,K. D., Kaplan,C. D. and Kornberg,R. D. (2006) Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis. Cell, 127, 941-954.
-
(2006)
Cell
, vol.127
, pp. 941-954
-
-
Wang, D.1
Bushnell, D.A.2
Westover, K.D.3
Kaplan, C.D.4
Kornberg, R.D.5
-
32
-
-
66349138227
-
Structural basis of transcription: Backtracked RNA polymerase II at 3. 4 angstrom resolution
-
Wang,D., Bushnell,D. A., Huang,X., Westover,K. D., Levitt,M. and Kornberg,R. D. (2009) Structural basis of transcription: backtracked RNA polymerase II at 3. 4 angstrom resolution. Science, 324, 1203-1206.
-
(2009)
Science
, vol.324
, pp. 1203-1206
-
-
Wang, D.1
Bushnell, D.A.2
Huang, X.3
Westover, K.D.4
Levitt, M.5
Kornberg, R.D.6
-
33
-
-
84864722177
-
5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription
-
Kellinger,M. W., Song,C. X., Chong,J., Lu,X. Y., He,C. and Wang,D. (2012) 5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription. Nat. Struct. Mol. Biol., 19, 831-833.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 831-833
-
-
Kellinger, M.W.1
Song, C.X.2
Chong, J.3
Lu, X.Y.4
He, C.5
Wang, D.6
-
34
-
-
84862104596
-
Dissecting chemical interactions governing RNA polymerase II transcriptional fidelity
-
Kellinger,M. W., Ulrich,S., Chong,J., Kool,E. T. and Wang,D. (2012) Dissecting chemical interactions governing RNA polymerase II transcriptional fidelity. J. Am. Chem. Soc., 134, 8231-8240.
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 8231-8240
-
-
Kellinger, M.W.1
Ulrich, S.2
Chong, J.3
Kool, E.T.4
Wang, D.5
-
35
-
-
33751235874
-
Structural basis of transcription: Role of the trigger loop in substrate specificity and catalysis
-
Wang,D., Bushnell,D. A., Westover,K. D., Kaplan,C. D. and Kornberg,R. D. (2006) Structural basis of transcription: Role of the trigger loop in substrate specificity and catalysis. Cell, 127, 941-954.
-
(2006)
Cell
, vol.127
, pp. 941-954
-
-
Wang, D.1
Bushnell, D.A.2
Westover, K.D.3
Kaplan, C.D.4
Kornberg, R.D.5
-
36
-
-
0028828682
-
DNA with 2-5 phosphodiester bonds forms a duplex structure in the A-type conformation
-
Robinson,H., Jung,K.-E., Switzer,C. and Wang,A. H.-J. (1995) DNA with 2-5 phosphodiester bonds forms a duplex structure in the A-type conformation. J. Am. Chem. Soc., 117, 837-838.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 837-838
-
-
Robinson, H.1
Jung, K.-E.2
Switzer, C.3
Wang, A.H.-J.4
-
37
-
-
84896860766
-
Structural insights into the effects of 2-5 linkages on the RNA duplex
-
Sheng,J., Li,L., Engelhart,A. E., Gan,J., Wang,J. and Szostak,J. W. (2014) Structural insights into the effects of 2-5 linkages on the RNA duplex. Proc. Natl. Acad. Sci. U. S. A., 111, 3050-3055.
-
(2014)
Proc. Natl. Acad. Sci. U. S. A
, vol.111
, pp. 3050-3055
-
-
Sheng, J.1
Li, L.2
Engelhart, A.E.3
Gan, J.4
Wang, J.5
Szostak, J.W.6
-
38
-
-
84863069608
-
Dynamics of pyrophosphate ion release and its coupled trigger loop motion from closed to open state in RNA polymerase II
-
Da,L. T., Wang,D. and Huang,X. H. (2012) Dynamics of pyrophosphate ion release and its coupled trigger loop motion from closed to open state in RNA polymerase II. J. Am. Chem. Soc., 134, 2399-2406.
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 2399-2406
-
-
Da, L.T.1
Wang, D.2
Huang, X.H.3
-
39
-
-
33748518255
-
Comparison of multiple amber force fields and development of improved protein backbone parameters
-
Hornak,V., Abel,R., Okur,A., Strockbine,B., Roitberg,A. and Simmerling,C. (2006) Comparison of multiple amber force fields and development of improved protein backbone parameters. Proteins, 65, 712-725.
-
(2006)
Proteins
, vol.65
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
40
-
-
84865430144
-
-
Gaussian, Inc., Wallingford CT
-
Gaussion03. (2004) In: Frisch,MJ, Trucks,GW, Schlegel,HB, Scuseria,GE, Robb,MA, Cheeseman,JR, Montgomery,JA, Vreven,T, Kudin,KN and Burant,JC et al. Gaussian, Inc., Wallingford CT
-
(2004)
Gaussion03.
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Montgomery, J.A.7
Vreven, T.8
Kudin, K.N.9
Burant, J.C.10
-
41
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen,W. L., Chandrasekhar,J., Madura,J. D., Impey,R. W. and Klein,M. L. (1983) Comparison of simple potential functions for simulating liquid water. J. Chem. Phys., 79, 926-935.
-
(1983)
J. Chem. Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
42
-
-
84875592758
-
GROMACS 4. 5: A high-throughput and highly parallel open source molecular simulation toolkit
-
Pronk,S., Pall,S., Schulz,R., Larsson,P., Bjelkmar,P., Apostolov,R., Shirts,M. R., Smith,J. C., Kasson,P. M., van der Spoel,D. et al. (2013) GROMACS 4. 5: a high-throughput and highly parallel open source molecular simulation toolkit. Bioinformatics, 29, 845-854.
-
(2013)
Bioinformatics
, vol.29
, pp. 845-854
-
-
Pronk, S.1
Pall, S.2
Schulz, R.3
Larsson, P.4
Bjelkmar, P.5
Apostolov, R.6
Shirts, M.R.7
Smith, J.C.8
Kasson, P.M.9
Van Der Spoel, D.10
-
43
-
-
84894454265
-
The free energy landscape of pseudorotation in 3-5 and 2-5 linked nucleic acids
-
Li,L. and Szostak,J. W. (2014) The free energy landscape of pseudorotation in 3-5 and 2-5 linked nucleic acids. J. Am. Chem. Soc., 136, 2858-2865.
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 2858-2865
-
-
Li, L.1
Szostak, J.W.2
-
44
-
-
10944232674
-
Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS
-
Kettenberger,H., Armache,K.-J. and Cramer,P. (2004) Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. Mol. Cell, 16, 955-965.
-
(2004)
Mol. Cell
, vol.16
, pp. 955-965
-
-
Kettenberger, H.1
Armache, K.-J.2
Cramer, P.3
-
45
-
-
27144526242
-
A functional role for the switch 2 region of yeast RNA polymerase II in transcription start site utilization and abortive initiation
-
Majovski,R. C., Khaperskyy,D. A., Ghazy,M. A. and Ponticelli,A. S. (2005) A functional role for the switch 2 region of yeast RNA polymerase II in transcription start site utilization and abortive initiation. J. Biol. Chem., 280, 34917-34923.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 34917-34923
-
-
Majovski, R.C.1
Khaperskyy, D.A.2
Ghazy, M.A.3
Ponticelli, A.S.4
-
46
-
-
84872412814
-
RNA polymerase II transcription: Structure and mechanism
-
Liu,X., Bushnell,D. A. and Kornberg,R. D. (2013) RNA polymerase II transcription: structure and mechanism. Biochim. Biophys. Acta, 1829, 2-8.
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 2-8
-
-
Liu, X.1
Bushnell, D.A.2
Kornberg, R.D.3
-
48
-
-
84872375049
-
RNA polymerase II transcript elongation
-
Svejstrup,J. Q. (2013) RNA polymerase II transcript elongation. Biochim. Biophys. Acta, 1829, 1.
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 1
-
-
Svejstrup, J.Q.1
-
49
-
-
84872376551
-
Basic mechanism of transcription by RNA polymerase II
-
Svetlov,V. and Nudler,E. (2013) Basic mechanism of transcription by RNA polymerase II. Biochim. Biophys. Acta, 1829, 20-28.
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 20-28
-
-
Svetlov, V.1
Nudler, E.2
-
50
-
-
0032524661
-
Transcriptional fidelity and proofreading by RNA polymerase II
-
Thomas,M. J., Platas,A. A. and Hawley,D. K. (1998) Transcriptional fidelity and proofreading by RNA polymerase II. Cell, 93, 627-637.
-
(1998)
Cell
, vol.93
, pp. 627-637
-
-
Thomas, M.J.1
Platas, A.A.2
Hawley, D.K.3
-
51
-
-
77957678214
-
RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription
-
Huang,X., Wang,D., Weiss,D. R., Bushnell,D. A., Kornberg,R. D. and Levitt,M. (2010) RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription. Proc. Natl. Acad. Sci. U. S. A., 107, 15745-15750.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A
, vol.107
, pp. 15745-15750
-
-
Huang, X.1
Wang, D.2
Weiss, D.R.3
Bushnell, D.A.4
Kornberg, R.D.5
Levitt, M.6
-
53
-
-
84887562240
-
A chemical perspective on transcriptional fidelity: Dominant contributions of sugar integrity revealed by unlocked nucleic acids
-
Xu,L., Plouffe,S. W., Chong,J., Wengel,J. and Wang,D. (2013) A chemical perspective on transcriptional fidelity: dominant contributions of sugar integrity revealed by unlocked nucleic acids. Angew. Chem. Int. Ed. Engl., 52, 12341-12345.
-
(2013)
Angew. Chem. Int. Ed. Engl.
, vol.52
, pp. 12341-12345
-
-
Xu, L.1
Plouffe, S.W.2
Chong, J.3
Wengel, J.4
Wang, D.5
-
54
-
-
84901345829
-
Dissecting the chemical interactions and substrate structural signatures governing RNA polymerase II trigger loop closure by synthetic nucleic acid analogues
-
Xu,L., Butler,K. V., Chong,J., Wengel,J., Kool,E. T. and Wang,D. (2014) Dissecting the chemical interactions and substrate structural signatures governing RNA polymerase II trigger loop closure by synthetic nucleic acid analogues. Nucleic Acids Res., 42, 5863-5870.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 5863-5870
-
-
Xu, L.1
Butler, K.V.2
Chong, J.3
Wengel, J.4
Kool, E.T.5
Wang, D.6
-
55
-
-
77956921247
-
Genome instability due to ribonucleotide incorporation into DNA
-
Nick McElhinny,S. A., Kumar,D., Clark,A. B.,Watt,D. L., Watts,B. E., Lundstrom,E. B., Johansson,E., Chabes,A. and Kunkel,T. A. (2010) Genome instability due to ribonucleotide incorporation into DNA. Nat. Chem. Biol., 6, 774-781.
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 774-781
-
-
Nick McElhinny, S.A.1
Kumar, D.2
Clark, A.B.3
Watt, D.L.4
Watts, B.E.5
Lundstrom, E.B.6
Johansson, E.7
Chabes, A.8
Kunkel, T.A.9
-
56
-
-
84902074659
-
Ribonucleotides in DNA: Origins, repair and consequences
-
Williams,J. S. and Kunkel,T. A. (2014) Ribonucleotides in DNA: origins, repair and consequences. DNA Repair (Amst), 19, 27-37.
-
(2014)
DNA Repair (Amst)
, vol.19
, pp. 27-37
-
-
Williams, J.S.1
Kunkel, T.A.2
-
57
-
-
84855881475
-
RNase H and postreplication repair protect cells from ribonucleotides incorporated in DNA
-
Lazzaro,F., Novarina,D., Amara,F., Watt,D. L., Stone,J. E., Costanzo,V., Burgers,P. M., Kunkel,T. A., Plevani,P. and Muzi-Falconi,M. (2012) RNase H and postreplication repair protect cells from ribonucleotides incorporated in DNA. Mol. Cell, 45, 99-110.
-
(2012)
Mol. Cell
, vol.45
, pp. 99-110
-
-
Lazzaro, F.1
Novarina, D.2
Amara, F.3
Watt, D.L.4
Stone, J.E.5
Costanzo, V.6
Burgers, P.M.7
Kunkel, T.A.8
Plevani, P.9
Muzi-Falconi, M.10
-
58
-
-
84866851215
-
RNase H2-initiated ribonucleotide excision repair
-
Sparks,J. L., Chon,H., Cerritelli,S. M., Kunkel,T. A., Johansson,E., Crouch,R. J. and Burgers,P. M. (2012) RNase H2-initiated ribonucleotide excision repair. Mol. Cell, 47, 980-986.
-
(2012)
Mol. Cell
, vol.47
, pp. 980-986
-
-
Sparks, J.L.1
Chon, H.2
Cerritelli, S.M.3
Kunkel, T.A.4
Johansson, E.5
Crouch, R.J.6
Burgers, P.M.7
-
59
-
-
84876829295
-
Topoisomerase 1-mediated removal of ribonucleotides from nascent leading-strand DNA
-
Williams,J. S., Smith,D. J., Marjavaara,L., Lujan,S. A., Chabes,A. and Kunkel,T. A. (2013) Topoisomerase 1-mediated removal of ribonucleotides from nascent leading-strand DNA. Mol. Cell, 49, 1010-1015.
-
(2013)
Mol. Cell
, vol.49
, pp. 1010-1015
-
-
Williams, J.S.1
Smith, D.J.2
Marjavaara, L.3
Lujan, S.A.4
Chabes, A.5
Kunkel, T.A.6
-
60
-
-
84904248751
-
Avoidance of ribonucleotide-induced mutations by RNase H2 and Srs2-Exo1 mechanisms
-
Potenski,C. J., Niu,H., Sung,P. and Klein,H. L. (2014) Avoidance of ribonucleotide-induced mutations by RNase H2 and Srs2-Exo1 mechanisms. Nature, 511, 251-254.
-
(2014)
Nature
, vol.511
, pp. 251-254
-
-
Potenski, C.J.1
Niu, H.2
Sung, P.3
Klein, H.L.4
-
61
-
-
84892616837
-
Molecular biology,ribose-an internal threat to DNA
-
Caldecott,K. W. (2014) Molecular biology. Ribose-an internal threat to DNA. Science, 343, 260-261.
-
(2014)
Science
, vol.343
, pp. 260-261
-
-
Caldecott, K.W.1
-
62
-
-
84869080625
-
Causes and consequences of ribonucleotide incorporation into nuclear DNA
-
Dalgaard,J. Z. (2012) Causes and consequences of ribonucleotide incorporation into nuclear DNA. Trends Genet., 28, 592-597.
-
(2012)
Trends Genet
, vol.28
, pp. 592-597
-
-
Dalgaard, J.Z.1
-
63
-
-
33746522835
-
Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutieres syndrome and mimic congenital viral brain infection
-
Crow,Y. J., Leitch,A., Hayward,B. E., Garner,A., Parmar,R., Griffith,E., Ali,M., Semple,C., Aicardi,J., Babul-Hirji,R. et al. (2006) Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutieres syndrome and mimic congenital viral brain infection. Nat. Genet., 38, 910-916.
-
(2006)
Nat. Genet
, vol.38
, pp. 910-916
-
-
Crow, Y.J.1
Leitch, A.2
Hayward, B.E.3
Garner, A.4
Parmar, R.5
Griffith, E.6
Ali, M.7
Semple, C.8
Aicardi, J.9
Babul-Hirji, R.10
-
64
-
-
84893737510
-
Aprataxin resolves adenylated RNA-DNA junctions to maintain genome integrity
-
Tumbale,P., Williams,J. S., Schellenberg,M. J., Kunkel,T. A. and Williams,R. S. (2014) Aprataxin resolves adenylated RNA-DNA junctions to maintain genome integrity. Nature, 506, 111-115.
-
(2014)
Nature
, vol.506
, pp. 111-115
-
-
Tumbale, P.1
Williams, J.S.2
Schellenberg, M.J.3
Kunkel, T.A.4
Williams, R.S.5
-
65
-
-
39549119587
-
Mutations in deoxyribonucleotide biosynthesis pathway cause spreading of silencing across heterochromatic barriers at the mating-type region of the fission yeast
-
Singh,G. and Klar,A. J. (2008) Mutations in deoxyribonucleotide biosynthesis pathway cause spreading of silencing across heterochromatic barriers at the mating-type region of the fission yeast. Yeast, 25, 117-128.
-
(2008)
Yeast
, vol.25
, pp. 117-128
-
-
Singh, G.1
Klar, A.J.2
-
66
-
-
84887156806
-
Ribonucleotides are signals for mismatch repair of leading-strand replication errors
-
Lujan,S. A.,Williams,J. S., Clausen,A. R., Clark,A. B. and Kunkel,T. A. (2013) Ribonucleotides are signals for mismatch repair of leading-strand replication errors. Mol. Cell, 50, 437-443.
-
(2013)
Mol. Cell
, vol.50
, pp. 437-443
-
-
Lujan, S.A.1
Williams, J.S.2
Clausen, A.R.3
Clark, A.B.4
Kunkel, T.A.5
-
67
-
-
84887141327
-
Ribonucleotides misincorporated into DNA act as strand-discrimination signals in eukaryotic mismatch repair
-
Ghodgaonkar,M. M., Lazzaro,F., Olivera-Pimentel,M., Artola-Boran,M., Cejka,P., Reijns,M. A., Jackson,A. P., Plevani,P., Muzi-Falconi,M. and Jiricny,J. (2013) Ribonucleotides misincorporated into DNA act as strand-discrimination signals in eukaryotic mismatch repair. Mol. Cell, 50, 323-332.
-
(2013)
Mol. Cell
, vol.50
, pp. 323-332
-
-
Ghodgaonkar, M.M.1
Lazzaro, F.2
Olivera-Pimentel, M.3
Artola-Boran, M.4
Cejka, P.5
Reijns, M.A.6
Jackson, A.P.7
Plevani, P.8
Muzi-Falconi, M.9
Jiricny, J.10
-
68
-
-
84876401842
-
Ribonucleotides and manganese ions improve non-homologous end joining by human Polmu
-
Martin,M. J., Garcia-Ortiz,M. V., Esteban,V. and Blanco,L. (2013) Ribonucleotides and manganese ions improve non-homologous end joining by human Polmu. Nucleic Acids Res., 41, 2428-2436.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 2428-2436
-
-
Martin, M.J.1
Garcia-Ortiz, M.V.2
Esteban, V.3
Blanco, L.4
-
69
-
-
84878454082
-
Ribonucleolytic resection is required for repair of strand displaced nonhomologous end-joining intermediates
-
Bartlett,E. J., Brissett,N. C. and Doherty,A. J. (2013) Ribonucleolytic resection is required for repair of strand displaced nonhomologous end-joining intermediates. Proc. Natl. Acad. Sci. U. S. A., 110, E1984-E1991.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A
, vol.110
, pp. E1984-E1991
-
-
Bartlett, E.J.1
Brissett, N.C.2
Doherty, A.J.3
-
70
-
-
56749157389
-
Transcription-coupled DNA repair: Two decades of progress and surprises
-
Hanawalt,P. C. and Spivak,G. (2008) Transcription-coupled DNA repair: two decades of progress and surprises. Nat. Rev. Mol. Cell. Biol., 9, 958-970.
-
(2008)
Nat. Rev. Mol. Cell. Biol.
, vol.9
, pp. 958-970
-
-
Hanawalt, P.C.1
Spivak, G.2
|