CustusX: an open-source research platform for image-guided therapy

International Journal of Computer Assisted Radiology and Surgery

Volumn 11, Issue 4, 2016, Pages 505-519

  Askeland, Christian ^a,c   Solberg, Ole Vegard ^a   Bakeng, Janne Beate Lervik ^a   Reinertsen, Ingerid ^a   Tangen, Geir Arne ^a   Hofstad, Erlend Fagertun ^a   Iversen, Daniel Høyer ^a,b,c   Våpenstad, Cecilie ^a,b   Selbekk, Tormod ^a,c   Langø, Thomas ^a,c   Hernes, Toril A Nagelhus ^b,c   Olav Leira, Håkon ^b,c   Unsgård, Geirmund ^b,c   Lindseth, Frank ^a,b,c  

^a SINTEF TECHNOLOGY AND SOCIETY   (Norway)

^b NORWEGIAN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Norway)

^c TRONDHEIM UNIVERSITY HOSPITAL   (Norway)

Author keywords

Computer assisted interventions; Image guided therapy; Intraoperative ultrasound; Open source; Platform

Indexed keywords

ACCESS TO INFORMATION; ACCURACY; ALGORITHM; ARTICLE; BRONCHOSCOPY; CLINICAL RESEARCH; IMAGE GUIDED THERAPY; IMAGE PROCESSING; IMAGING SOFTWARE; INTRAOPERATIVE PERIOD; LAPAROSCOPIC SURGERY; NEUROSURGERY; PRIORITY JOURNAL; SURGICAL NAVIGATION SYSTEM; ULTRASOUND; VALIDATION STUDY; VASCULAR SURGERY; WORKFLOW; COMPUTER ASSISTED SURGERY; HUMAN; INTRAOPERATIVE MONITORING; PROCEDURES; REPRODUCIBILITY;

ALGORITHMS; HUMANS; MONITORING, INTRAOPERATIVE; REPRODUCIBILITY OF RESULTS; SURGERY, COMPUTER-ASSISTED;

EID: 84944705221     PISSN: 18616410     EISSN: 18616429     Source Type: Journal    
DOI: 10.1007/s11548-015-1292-0     Document Type: Article

References (42)

1. Fedorov A, Beichel R, Kalpathy-Cramer J, Finet J, Fillion-Robin JC, Pujol S, Bauer C, Jennings D, Fennessy F, Sonka M, Buatti J, Aylward S, Miller JV, Pieper S, Kikinis R (2012) 3D slicer as an image computing platform for the quantitative imaging network. Magn Reson Imaging 30(9):1323–1341. doi:10.1016/j.mri.2012.05.001
2. Lasso A, Heffter T, Rankin A, Pinter C, Ungi T, Fichtinger G (2014) PLUS: open-source toolkit for ultrasound-guided intervention systems. IEEE Trans Biomed Eng 61(10):2527–2537. doi:10.1109/TBME.2014.2322864
3. Nolden M, Zelzer S, Seitel A, Wald D, Muller M, Franz AM, Maleike D, Fangerau M, Baumhauer M, Maier-Hein L, Maier-Hein KH, Meinzer HP, Wolf I (2013) The medical imaging interaction toolkit: challenges and advances: 10 years of open-source development. Int J Comput Assist Radiol Surg 8(4):607–620. doi:10.1007/s11548-013-0840-8
4. Mercier L, Del Maestro RF, Petrecca K, Kochanowska A, Drouin S, Yan CX, Janke AL, Chen SJ, Collins DL (2011) New prototype neuronavigation system based on preoperative imaging and intraoperative freehand ultrasound: system description and validation. Int J Comput Assist Radiol Surg 6(4):507–522. doi:10.1007/s11548-010-0535-3
5. Ince DC, Hatton L, Graham-Cumming J (2012) The case for open computer programs. Nature 482(7386):485–488. doi:10.1038/nature10836
6. Bradski G, Kaehler A (2008) Learning OpenCV: computer vision with the OpenCV library. O’Reilly Media Inc, New York
7. Tokuda J, Fischer GS, Papademetris X, Yaniv Z, Ibanez L, Cheng P, Liu H, Blevins J, Arata J, Golby AJ, Kapur T, Pieper S, Burdette EC, Fichtinger G, Tempany CM, Hata N (2009) OpenIGTLink: an open network protocol for image-guided therapy environment. Int J Med Robot Comput Assist Surg 5(4):423–434. ISSN: 1478-596X. doi:10.1002/rcs.274
8. Cleary K, Cheng P, Enquobahrie A, Yaniv Z (2007) IGSTK: the book. Signature Book, Gaithersburg
9. OSGI Alliance (2009) OSGi service platform, core specification, release 4, Version 4.2. OSGI Alliance. http://www.osgi.org/Download/Release4V42
10. Rosset A, Spadola L, Ratib O (2004) OsiriX: an open-source software for navigating in multidimensional dicom images. J Digit Imaging 17(3):205–216
11. Yushkevich PA, Piven J, Hazlett HC, Smith RG, Ho S, Gee JC, Gerig G (2006) User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability. Neuroimage 31(3):1116–1128
12. Homann H (2007) Implementation of a 3D thinning algorithm. Insight J. http://hdl.handle.net/1926/1292
13. Smistad E, Elster AC, Lindseth F (2014) GPU accelerated segmentation and centerline extraction of tubular structures from medical images. Int J Comput Assist Radiol Surg 9(4):561–575. doi:10.1007/s11548-013-0956-x
14. Ibanez L, Schroeder W, Ng L, Cates J (2005) The ITK software guide. Kitware Inc, New York
15. Reinertsen I, Lindseth F, Askeland C, Iversen DH, Unsgard G (2014) Intra-operative correction of brain-shift. Acta Neurochir (Wien) 156(7):1301–1310. doi:10.1007/s00701-014-2052-6
16. Klein S, Staring M, Murphy K, Viergever MA, Pluim JP (2010) Elastix: a toolbox for intensity-based medical image registration. IEEE Trans Med Imaging 29(1):196–205. doi:10.1109/TMI.2009.2035616
17. Wein W, Ladikos A, Fuerst B, Shah A, Sharma K, Navab N (2013) Global registration of ultrasound to MRI using the LC2 metric for enabling neurosurgical guidance. Med Image Comput Comput Assist Interv 16(Pt 1):34–41. doi:10.1007/978-3-642-40811-3_5
18. Bø LE, Hofstad EF, Lindseth F, Hernes TAN (2015) Versatile robotic probe calibration for position tracking in ultrasound imaging. Phys Med Biol 60(9):3499. doi:10.1088/0031-9155/60/9/3499
19. Solberg OV, Lindseth F, Torp H, Blake RE, Nagelhus Hernes TA (2007) Freehand 3D ultrasound reconstruction algorithms—A review. Ultrasound Med Biol 33(7):991–1009. doi:10.1016/j.ultrasmedbio.2007.02.015
20. Oygard T (2014) Improved distance weighted GPU-based ultrasound reconstruction methods. http://hdl.handle.net/11250/253675
21. Dingsøyr T, Nerur S, Balijepally V, Moe NB (2012) A decade of agile methodologies: towards explaining agile software development. J Syst Softw, 85(6):1213–1221. ISSN: 0164-1212. doi:10.1016/j.jss.2012.02.033. Special Issue: Agile Development
22. Humble J, Farley D (2010) Continuous delivery: reliable software releases through build, test, and deployment automation. Addison-Wesley Professional, 1st edn. ISBN: 0321601912, 9780321601919
23. Smart J (2011) Jenkins: the definitive guide. O’Reilly Media Inc, New York
24. Lindseth F, Bang J, Lango T (2003) A robust and automatic method for evaluating accuracy in 3-D ultrasound-based navigation. Ultrasound Med Biol 29(10):1439–1452
25. Mercier L, Langø T, Lindseth F, Collins LD (2005) A review of calibration techniques for freehand 3-d ultrasound systems. Ultrasound Med Biol. 31(2):143–165. ISSN: 0301-5629. doi:10.1016/j.ultrasmedbio.2004.11.001. http://www.sciencedirect.com/science/article/pii/S0301562904003862
26. Nigris D, Collins D, Arbel T (2013) Fast rigid registration of pre-operative magnetic resonance images to intra-operative ultrasound for neurosurgery based on high confidence gradient orientations. Int J Comput Assist Radiol Surg. 8(4):649–661. ISSN: 1861-6410. doi:10.1007/s11548-013-0826-6
27. Rivaz H, Karimaghaloo Z, Fonov V, Collins D (2014) Nonrigid registration of ultrasound and mri using contextual conditioned mutual information. IEEE Trans Med Imaging 33(3):708–725. ISSN: 0278-0062. doi:10.1109/TMI.2013.2294630
28. Lindseth F, Lango T, Bang J, Hernes TAN (2002) Accuracy evaluation of a 3d ultrasound-based neuronavigation system. Comput Aided Surg 7(4):197–222. doi:10.1007/978-3-642-56168-9_11
29. Reinertsen I, Descoteaux M, Siddiqi K, Collins D (2007) Validation of vessel-based registration for correction of brain shift. Med Image Anal. 11(4):374–388. ISSN: 1361-8415. doi: 10.1016/j.media.2007.04.002. http://www.sciencedirect.com/science/article/pii/S1361841507000333
30. Bø LE, Leira HO, Tangen GA, Hofstad EF, Amundsen T, Langø T (2012) Accuracy of electromagnetic tracking with a prototype field generator in an interventional OR setting. Med Phys 39(1):399–406. doi:10.1118/1.3666768
31. Marz K, Franz AM, Seitel A, Winterstein A, Bendl R, Zelzer S, Nolden M, Meinzer HP, Maier-Hein L (2014) MITK-US: real-time ultrasound support within MITK. Int J Comput Assist Radiol Surg 9(3):411–420. doi:10.1007/s11548-013-0962-z
32. Solheim O, Selbekk T, Lovstakken L, Tangen GA, Solberg OV, Johansen TF, Capplen J, Unsgard G (2010) Intrasellar ultrasound in transsphenoidal surgery: a novel technique. Neurosurgery 66(1):173–185. doi:10.1227/01.NEU.0000360571.11582.4F (discussion 185-6)
33. Iversen D, Lindseth F, Unsgaard G, Torp H, Lovstakken L (2013) Model-based correction of velocity measurements in navigated 3-D ultrasound imaging during neurosurgical interventions. IEEE Trans Med Imaging, 32(9):1622–1631. ISSN: 0278-0062. doi:10.1109/TMI.2013.2261536
34. Lango T, Vijayan S, Rethy A, Vapenstad C, Solberg OV, Marvik R, Johnsen G, Hernes TN (2012) Navigated laparoscopic ultrasound in abdominal soft tissue surgery: technological overview and perspectives. Int J Comput Assist Radiol Surg 7(4):585–599. doi:10.1007/s11548-011-0656-3
35. Våpenstad C, Rethy A, Langø T, Selbekk T, Ystgaard B, Hernes T, Mårvik R (2010) Laparoscopic ultrasound: a survey of its current and future use, requirements, and integration with navigation technology. Surg Endosc 24(12):2944–2953. ISSN: 0930-2794. doi:10.1007/s00464-010-1135-6
36. Zijlmans M, Langø T, Hofstad EF, Swol CFPV, Rethy A (2012) Navigated laparoscopy—Liver shift and deformation due to pneumoperitoneum in an animal model. Minim Invasive Ther Allied Technol 21(3):241–248. doi:10.3109/13645706.2012.665805
37. Solberg OV, Lango T, Tangen GA, Marvik R, Ystgaard B, Rethy A, Hernes TA (2009) Navigated ultrasound in laparoscopic surgery. Minim Invasive Ther Allied Technol 18(1):36–53. doi:10.1080/13645700802383975
38. McCullough PA, Adam A, Becker CR, Davidson C, Lameire N, Stacul F, Tumlin J (2006) Risk prediction of contrast-induced nephropathy. Am J Cardiol 98(6):27–36
39. Manstad-Hulaas F, Tangen GA, Gruionu LG, Aadahl P, Hernes TAN (2011) Three-dimensional endovascular navigation with electromagnetic tracking: ex vivo and in vivo accuracy. J Endovasc Ther 18(2):230–240. doi:10.1583/10-3301.1
40. Manstad-Hulaas F, Tangen GA, Dahl T, Hernes TAN, Aadahl P (2012) Three-dimensional electromagnetic navigation vs. fluoroscopy for endovascular aneurysm repair: a prospective feasibility study in patients. J Endovasc Ther 19(1):70–78. doi:10.1583/11-3557.1
41. Reynisson PJ, Leira HO, Hernes TN, Hofstad EF, Scali M, Sorger H, Amundsen T, Lindseth F, Lango T (2014) Navigated bronchoscopy: a technical review. J Bronchol Interv Pulmonol 21(3):242–264. doi:10.1097/LBR.0000000000000064
42. Hofstad EF, Sorger H, Leira HO, Amundsen T, Lango T (2014) Automatic registration of CT images to patient during the initial phase of bronchoscopy: a clinical pilot study. Med Phys 41(4):041903. doi:10.1118/1.4866884