-
1
-
-
17344372249
-
Modified oligonucleotides: synthesis and strategy for users
-
Verma, S. and Eckstein, F. (1998) Modified oligonucleotides: synthesis and strategy for users. Annu. Rev. Biochem., 67, 99-134.
-
(1998)
Annu. Rev. Biochem.
, vol.67
, pp. 99-134
-
-
Verma, S.1
Eckstein, F.2
-
2
-
-
0035190483
-
Chemical synthesis and biological investigation of a 77-mer oligoribonucleotide with a sequence corresponding to E. coli tRNA(Asp)
-
Persson, T., Kutzke, U., Busch, S., Held, R., and Hartmann, R.K. (2001) Chemical synthesis and biological investigation of a 77-mer oligoribonucleotide with a sequence corresponding to E. coli tRNA(Asp). Bioorg. Med. Chem., 9, 51-56.
-
(2001)
Bioorg. Med. Chem
, vol.9
, pp. 51-56
-
-
Persson, T.1
Kutzke, U.2
Busch, S.3
Held, R.4
Hartmann, R.K.5
-
3
-
-
0032519343
-
Efficient activation of nucleoside phosphoramidites with 4,5-dicyanoimidazole during oligonucleotide synthesis
-
Vargeese, C., Carter, J., Yegge, J., Krivjansky, S., Settle, A., Kropp, E., Peterson, K., and Pieken, W. (1998) Efficient activation of nucleoside phosphoramidites with 4,5-dicyanoimidazole during oligonucleotide synthesis. Nucleic Acids Res., 26, 1046-1050.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1046-1050
-
-
Vargeese, C.1
Carter, J.2
Yegge, J.3
Krivjansky, S.4
Settle, A.5
Kropp, E.6
Peterson, K.7
Pieken, W.8
-
4
-
-
0027446641
-
Effect of excess water on the desilylation of oligoribonucleotides using tetrabutylammonium fluoride
-
Hogrefe, R.I., McCaffrey, A.P., Borozdina, L.U., McCampbell, E.S., and Vaghefi, M.M. (1993) Effect of excess water on the desilylation of oligoribonucleotides using tetrabutylammonium fluoride. Nucleic Acids Res., 21, 4739-4741.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 4739-4741
-
-
Hogrefe, R.I.1
McCaffrey, A.P.2
Borozdina, L.U.3
McCampbell, E.S.4
Vaghefi, M.M.5
-
5
-
-
0029151591
-
Synthesis, deprotection, analysis and purification of RNA and ribozymes
-
Wincott, F., DiRenzo, A., Shaffer, C., Grimm, S., Tracz, D., Workman, C., Sweedler, D., Gonzales, C., Scaringe, S., and Usman, N. (1995) Synthesis, deprotection, analysis and purification of RNA and ribozymes. Nucleic Acids Res., 23, 2677-2684.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2677-2684
-
-
Wincott, F.1
DiRenzo, A.2
Shaffer, C.3
Grimm, S.4
Tracz, D.5
Workman, C.6
Sweedler, D.7
Gonzales, C.8
Scaringe, S.9
Usman, N.10
-
6
-
-
33747177904
-
Direct comparison of nick-joining activity of the nucleic acid ligases from bacteriophage T4
-
Bullard, D.R. and Bowater, R.P. (2006) Direct comparison of nick-joining activity of the nucleic acid ligases from bacteriophage T4. Biochem. J., 398, 135-144.
-
(2006)
Biochem. J.
, vol.398
, pp. 135-144
-
-
Bullard, D.R.1
Bowater, R.P.2
-
7
-
-
0036790939
-
Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains
-
Ho, C.K. and Shuman, S. (2002) Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains. Proc. Natl. Acad. Sci. U.S.A., 99, 12709-12714.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 12709-12714
-
-
Ho, C.K.1
Shuman, S.2
-
8
-
-
0022425388
-
Donor activation in the T4 RNA ligase reaction
-
McLaughlin, L.W., Piel, N., and Graeser, E. (1985) Donor activation in the T4 RNA ligase reaction. Biochemistry, 24, 267-273.
-
(1985)
Biochemistry
, vol.24
, pp. 267-273
-
-
McLaughlin, L.W.1
Piel, N.2
Graeser, E.3
-
9
-
-
0023663357
-
Effect of single amino acid changes in the region of the adenylylation site of T4 RNA ligase
-
Heaphy, S., Singh, M., and Gait, M.J. (1987) Effect of single amino acid changes in the region of the adenylylation site of T4 RNA ligase. Biochemistry, 26, 1688-1696.
-
(1987)
Biochemistry
, vol.26
, pp. 1688-1696
-
-
Heaphy, S.1
Singh, M.2
Gait, M.J.3
-
10
-
-
0041529937
-
Mutational analysis of bacteriophage T4 RNA ligase 1. Different functional groups are required for the nucleotidyl transfer and phosphodiester bond formation steps of the ligation reaction
-
Wang, L.K., Ho, C.K., Pei, Y., and Shuman, S. (2003) Mutational analysis of bacteriophage T4 RNA ligase 1. Different functional groups are required for the nucleotidyl transfer and phosphodiester bond formation steps of the ligation reaction. J. Biol. Chem., 278, 29454-29462.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 29454-29462
-
-
Wang, L.K.1
Ho, C.K.2
Pei, Y.3
Shuman, S.4
-
11
-
-
0022999793
-
Ligation of single-stranded oligodeoxyribonucleotides by T4 RNA ligase
-
Tessier, D.C., Brousseau, R., and Vernet, T. (1986) Ligation of single-stranded oligodeoxyribonucleotides by T4 RNA ligase. Anal. Biochem., 158, 171-178.
-
(1986)
Anal. Biochem.
, vol.158
, pp. 171-178
-
-
Tessier, D.C.1
Brousseau, R.2
Vernet, T.3
-
12
-
-
13744254237
-
Isolation and characterization of a thermostable RNA ligase 1 from a Thermus scotoductus bacteriophage TS2126 with good single-stranded DNA ligation properties
-
Blondal, T., Thorisdottir, A., Unnsteinsdottir, U., Hjorleifsdottir, S., Ævarsson, A., Ernstsson, S., Fridjonsson, O.H., Skirnisdottir, S., Wheat, J.O., Hermannsdottir, A.G. et al . (2005) Isolation and characterization of a thermostable RNA ligase 1 from a Thermus scotoductus bacteriophage TS2126 with good single-stranded DNA ligation properties. Nucleic Acids Res., 33, 135-142.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 135-142
-
-
Blondal, T.1
Thorisdottir, A.2
Unnsteinsdottir, U.3
Hjorleifsdottir, S.4
Ævarsson, A.5
Ernstsson, S.6
Fridjonsson, O.H.7
Skirnisdottir, S.8
Wheat, J.O.9
Hermannsdottir, A.G.10
-
13
-
-
0026680843
-
Site-specific modification of pre-mRNA:The 2_-hydroxyl groups at the splice sites
-
Moore, M.J. and Sharp, P.A. (1992) Site-specific modification of pre-mRNA:The 2_-hydroxyl groups at the splice sites. Science, 256, 992-997.
-
(1992)
Science
, vol.256
, pp. 992-997
-
-
Moore, M.J.1
Sharp, P.A.2
-
14
-
-
0035104772
-
Dynamic Exchanges of RNA Interactions Leading to Catalytic Core Formation in the U12-Dependent Spliceosome
-
Frilander, M.J. and Steitz, J.A. (2001) Dynamic Exchanges of RNA Interactions Leading to Catalytic Core Formation in the U12-Dependent Spliceosome. Mol. Cell, 7, 217-226.
-
(2001)
Mol. Cell
, vol.7
, pp. 217-226
-
-
Frilander, M.J.1
Steitz, J.A.2
-
15
-
-
0030044836
-
Evidence that sequence-independent binding of highly conserved U2 snRNP proteins upstream of the branch site is required for assembly of spliceosomal complex A
-
Gozani, O., Feld, R., and Reed, R. (1996) Evidence that sequence-independent binding of highly conserved U2 snRNP proteins upstream of the branch site is required for assembly of spliceosomal complex A. Genes Dev., 10, 233-243.
-
(1996)
Genes Dev.
, vol.10
, pp. 233-243
-
-
Gozani, O.1
Feld, R.2
Reed, R.3
-
16
-
-
0034672093
-
The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions
-
Le Hir, H., Izaurralde, E., Maquat, L.E., and Moore, M.J. (2000a) The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions. EMBO J., 19, 6860-6869.
-
(2000)
EMBO J.
, vol.19
, pp. 6860-6869
-
-
Hir, L.H.1
Izaurralde, E.2
Maquat, L.E.3
Moore, M.J.4
-
17
-
-
0034193569
-
Pre-mRNA splicing alters mRNP composition: evidence for stable association of proteins at exon-exon junctions
-
Le Hir, H., Moore, M.J., and Maquat, L.E. (2000b) Pre-mRNA splicing alters mRNP composition: evidence for stable association of proteins at exon-exon junctions. Genes Dev., 14, 1098-1108.
-
(2000)
Genes Dev.
, vol.14
, pp. 1098-1108
-
-
Hir, L.H.1
Moore, M.J.2
Maquat, L.E.3
-
18
-
-
0028556759
-
Dynamic association of proteins with the pre-mRNA branch region
-
MacMillan, A.M., Query, C.C., Allerson, C.R., Chen, S., Verdine, G.L., and Sharp, P.A. (1994) Dynamic association of proteins with the pre-mRNA branch region. Genes Dev., 8, 3008-3020.
-
(1994)
Genes Dev.
, vol.8
, pp. 3008-3020
-
-
MacMillan, A.M.1
Query, C.C.2
Allerson, C.R.3
Chen, S.4
Verdine, G.L.5
Sharp, P.A.6
-
19
-
-
0033634673
-
Functional recognition of the 5_ splice site by U4/U6.U5 tri-snRNP defines a novel ATP- dependent step in early spliceosome assembly
-
Maroney, P.A., Romfo, C.M., and Nilsen, T.W. (2000) Functional recognition of the 5_ splice site by U4/U6.U5 tri-snRNP defines a novel ATP- dependent step in early spliceosome assembly. Mol. Cell, 6, 317-328.
-
(2000)
Mol. Cell
, vol.6
, pp. 317-328
-
-
Maroney, P.A.1
Romfo, C.M.2
Nilsen, T.W.3
-
20
-
-
0035796398
-
Proximity of the invariant loop of U5 snRNA to the second intron residue during pre-mRNA splicing
-
McConnell, T.S. and Steitz, J.A. (2001) Proximity of the invariant loop of U5 snRNA to the second intron residue during pre-mRNA splicing. EMBO J., 20, 3577-3586.
-
(2001)
EMBO J.
, vol.20
, pp. 3577-3586
-
-
McConnell, T.S.1
Steitz, J.A.2
-
21
-
-
0029922975
-
The 5_ and 3_ splice sites come together via a three dimensional diffusion mechanism
-
Pasman, Z. and Garcia-Blanco, M.A. (1996) The 5_ and 3_ splice sites come together via a three dimensional diffusion mechanism. Nucleic Acids Res., 24, 1638-1645.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 1638-1645
-
-
Pasman, Z.1
Garcia-Blanco, M.A.2
-
22
-
-
0028205987
-
Branch nucleophile selection in pre-mRNA splicing: evidence for the bulged duplex model
-
Query, C.C., Moore, M.J., and Sharp, P.A. (1994) Branch nucleophile selection in pre-mRNA splicing: evidence for the bulged duplex model. Genes Dev., 8, 587-597.
-
(1994)
Genes Dev.
, vol.8
, pp. 587-597
-
-
Query, C.C.1
Moore, M.J.2
Sharp, P.A.3
-
23
-
-
0001863161
-
Uses of site-specifically modified RNAs constructed by RNA ligation
-
(ed. C.W.J. Smith), Oxford University Press, Oxford
-
Moore, M.J. and Query, C.C. (1998), Uses of site-specifically modified RNAs constructed by RNA ligation in RNA:Protein Interactions A Practical Approach (ed. C.W.J. Smith), Oxford University Press, Oxford, pp. 75-108.
-
(1998)
RNA:Protein Interactions A Practical Approach
, pp. 75-108
-
-
Moore, M.J.1
Query, C.C.2
-
24
-
-
0032824051
-
Identification of RNA-protein contacts within functional ribonucleoprotein complexes by RNA site-specific labeling and UV crosslinking
-
Reed, R. and Chiara, M.D. (1999) Identification of RNA-protein contacts within functional ribonucleoprotein complexes by RNA site-specific labeling and UV crosslinking. Meth. Enzymol., 18, 3-12.
-
(1999)
Meth. Enzymol.
, vol.18
, pp. 3-12
-
-
Reed, R.1
Chiara, M.D.2
-
25
-
-
0032820659
-
Construction of 4-thiouridine site-specifically substituted RNAs for cross-linking studies
-
Yu, Y.T. (1999) Construction of 4-thiouridine site-specifically substituted RNAs for cross-linking studies. Meth. Enzymol., 18, 13-21.
-
(1999)
Meth. Enzymol.
, vol.18
, pp. 13-21
-
-
Yu, Y.T.1
-
26
-
-
0014850334
-
Polynucleotide Ligase-Catalyzed Joining of Deoxyribo-oligonucleotides on Ribopolynucleotide Templates and of Ribo-oligonucleotides on Deoxyribopolynucleotide Templates
-
Kleppe, K., van de Sande, J.H., and Khorana, H.G. (1970) Polynucleotide Ligase-Catalyzed Joining of Deoxyribo-oligonucleotides on Ribopolynucleotide Templates and of Ribo-oligonucleotides on Deoxyribopolynucleotide Templates. Proc. Natl. Acad. Sci. U.S.A., 67, 68-73.
-
(1970)
Proc. Natl. Acad. Sci. U.S.A.
, vol.67
, pp. 68-73
-
-
Kleppe, K.1
van de Sande, J.H.2
Khorana, H.G.3
-
27
-
-
0023651444
-
Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
-
Milligan, J.F., Groebe, D.R., Witherell, G.W., and Uhlenbeck, O.C. (1987) Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res., 15, 8783-8798.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 8783-8798
-
-
Milligan, J.F.1
Groebe, D.R.2
Witherell, G.W.3
Uhlenbeck, O.C.4
-
28
-
-
0024819449
-
Synthesis of small RNAs using T7 RNA polymerase
-
Milligan, J.F. and Uhlenbeck, O.C. (1989) Synthesis of small RNAs using T7 RNA polymerase. Meth. Enzymol., 180, 51-62.
-
(1989)
Meth. Enzymol.
, vol.180
, pp. 51-62
-
-
Milligan, J.F.1
Uhlenbeck, O.C.2
-
29
-
-
0027739853
-
The U5 and U6 small nuclear RNAs as active site components of the spliceosome
-
Sontheimer, E.J. and Steitz, J.A. (1993) The U5 and U6 small nuclear RNAs as active site components of the spliceosome. Science, 262, 1989-1996.
-
(1993)
Science
, vol.262
, pp. 1989-1996
-
-
Sontheimer, E.J.1
Steitz, J.A.2
-
30
-
-
0027059033
-
Site-specific crosslinking of mammalian U5 snRNP to the 5_ splice site before the first step of pre-mRNA splicing
-
Wyatt, J.R., Sontheimer, E.J., and Steitz, J.A. (1992) Site-specific crosslinking of mammalian U5 snRNP to the 5_ splice site before the first step of pre-mRNA splicing. Genes Dev., 6, 2542-2553.
-
(1992)
Genes Dev.
, vol.6
, pp. 2542-2553
-
-
Wyatt, J.R.1
Sontheimer, E.J.2
Steitz, J.A.3
-
31
-
-
0024269992
-
RNA synthesis: strategies for the use of bacteriophage RNA polymerases
-
Krupp, G. (1988) RNA synthesis: strategies for the use of bacteriophage RNA polymerases. Gene, 72, 75-89.
-
(1988)
Gene
, vol.72
, pp. 75-89
-
-
Krupp, G.1
-
32
-
-
0032827799
-
A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase
-
Kao, C., Zheng, M., and Rüdisser, S. (1999) A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase. RNA, 5, 1268-1272.
-
(1999)
RNA
, vol.5
, pp. 1268-1272
-
-
Kao, C.1
Zheng, M.2
Rüdisser, S.3
-
33
-
-
0031230045
-
The position of site-directed clevage of RNA using RNase H and 2_-O-methyl oligonucleotides is dependent on the enzyme source
-
Lapham, J., Yu, Y.T., Shu, M.D., Steitz, J.A., and Crothers, D.M. (1997) The position of site-directed clevage of RNA using RNase H and 2_-O-methyl oligonucleotides is dependent on the enzyme source. RNA, 3, 950-951.
-
(1997)
RNA
, vol.3
, pp. 950-951
-
-
Lapham, J.1
Yu, Y.T.2
Shu, M.D.3
Steitz, J.A.4
Crothers, D.M.5
-
34
-
-
0015851235
-
Isolation and Characterization of an Endonuclease from Escherichia coli Specific for Ribonucleic Acid in Ribonucleic Acid Deoxyribonucleic Acid Hybrid Structures
-
Berkower, I., Leis, J., and Hurwitz, J. (1973) Isolation and Characterization of an Endonuclease from Escherichia coli Specific for Ribonucleic Acid in Ribonucleic Acid Deoxyribonucleic Acid Hybrid Structures. J. Biol. Chem., 248, 5914-5921.
-
(1973)
J. Biol. Chem.
, vol.248
, pp. 5914-5921
-
-
Berkower, I.1
Leis, J.2
Hurwitz, J.3
-
35
-
-
0023650861
-
Sequence-dependent hydrolysis of RNA using modified oligonucleotide splints and RNase H
-
Inoue, H., Hayase, Y., Iwai, S., and Ohtsuka, E. (1987) Sequence-dependent hydrolysis of RNA using modified oligonucleotide splints and RNase H. FEBS Lett., 215, 327-330.
-
(1987)
FEBS Lett.
, vol.215
, pp. 327-330
-
-
Inoue, H.1
Hayase, Y.2
Iwai, S.3
Ohtsuka, E.4
-
36
-
-
0029845145
-
RNase H cleavage for processing of in vitro transcribed RNA for NMR studies and RNA ligation
-
Lapham, J. and Crothers, D.M. (1996) RNase H cleavage for processing of in vitro transcribed RNA for NMR studies and RNA ligation. RNA, 2, 289-296.
-
(1996)
RNA
, vol.2
, pp. 289-296
-
-
Lapham, J.1
Crothers, D.M.2
-
37
-
-
0003836971
-
-
Oxford University Press, Oxford, UK
-
Dawson, R.M.C. Elliott, D.C. Elliott, W.H. and Jones, K.M. (1989) Data for Biochemical Research, Oxford University Press, Oxford, UK.
-
(1989)
Data for Biochemical Research
-
-
Dawson, R.M.C.1
Elliott, D.C.2
Elliott, W.H.3
Jones, K.M.4
-
38
-
-
46749085102
-
Sculpting an RNA conformational energy landscape by a methyl group modification--a single-molecule FRET study
-
Kobitski, A.Y., Hengesbach, M., Helm, M. and Nienhaus, G.U. (2008) Sculpting an RNA conformational energy landscape by a methyl group modification--a single-molecule FRET study. Angew. Chem. Int. Ed., 47, 4326-4330.
-
(2008)
Angew. Chem. Int. Ed.
, vol.47
, pp. 4326-4330
-
-
Kobitski, A.Y.1
Hengesbach, M.2
Helm, M.3
Nienhaus, G.U.4
-
39
-
-
33947494652
-
Stepwise protein-mediated RNA folding directs assembly of telomerase ribonucleoprotein
-
Stone, M.D. Mihalusova, M., O'connor, C.M., Prathapam, R., Collins, K. and Zhuang, X. (2007) Stepwise protein-mediated RNA folding directs assembly of telomerase ribonucleoprotein. Nature, 446, 458-461.
-
(2007)
Nature
, vol.446
, pp. 458-461
-
-
Stone, M.D.1
Mihalusova, M.2
O'connor, C.M.3
Prathapam, R.4
Collins, K.5
Zhuang, X.6
-
40
-
-
35948955064
-
A methyl group controls conformational equilibrium in human mitochondrial tRNA(Lys)
-
Voigts-Hoffmann, F., Hengesbach, M., Kobitski, A.Y., van Aerschot, A., Herdewijn, P., Nienhaus, G.U., and Helm, M. (2007) A methyl group controls conformational equilibrium in human mitochondrial tRNA(Lys). J. Am. Chem. Soc., 129, 13382-13383.
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 13382-13383
-
-
Voigts-Hoffmann, F.1
Hengesbach, M.2
Kobitski, A.Y.3
van Aerschot, A.4
Herdewijn, P.5
Nienhaus, G.U.6
Helm, M.7
-
41
-
-
58849135321
-
RNA intramolecular dynamics by single-molecule FRET
-
Unit 11.12
-
Hengesbach, M., Kobitski, A., Voigts-Hoffmann, F., Frauer, C., Nienhaus, G.U., and Helm, M. (2008) RNA intramolecular dynamics by single-molecule FRET. Curr. Protoc. Nucleic Acid Chem., 11, Unit 11.12.
-
(2008)
Curr. Protoc. Nucleic Acid Chem.
, pp. 11
-
-
Hengesbach, M.1
Kobitski, A.2
Voigts-Hoffmann, F.3
Frauer, C.4
Nienhaus, G.U.5
Helm, M.6
-
42
-
-
84977604332
-
-
(ed. H. Grosjean), Landes Bioscience, Austin, TX
-
Hayrapetyan, A., Seidu-Larry, S. and Helm, M. (2009) in DNA and RNA Modification Enzymes: Structure, Mechanism, Function and Evolution (ed. H. Grosjean), Landes Bioscience, Austin, TX, pp. 629-635.
-
(2009)
DNA and RNA Modification Enzymes: Structure, Mechanism, Function and Evolution
, pp. 629-635
-
-
Hayrapetyan, A.1
Seidu-Larry, S.2
Helm, M.3
-
43
-
-
0003005414
-
J. RNA Ligases: Function, Mechanism, and Sequence Conservation
-
(eds R.W. Simons and M. Grunberg-Manago), Cold Spring Harbor, New York
-
Arn, E.A. and Abelson, J. (1998), J. RNA Ligases: Function, Mechanism, and Sequence Conservation in RNA Structure and Function (eds R.W. Simons and M. Grunberg-Manago), Cold Spring Harbor, New York, pp. 695-726.
-
(1998)
RNA Structure and Function
, pp. 695-726
-
-
Arn, E.A.1
Abelson, J.2
-
44
-
-
0032557557
-
tRNA splicing
-
Abelson, J., Trotta, C.R., and Li, H. (1998) tRNA splicing. J. Biol. Chem., 273, 12685-12688.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 12685-12688
-
-
Abelson, J.1
Trotta, C.R.2
Li, H.3
-
45
-
-
0035896357
-
An RNA ligase essential for RNA editing and survival of the bloodstream form of Trypanosoma brucei
-
Schnaufer, A., Panigrahi, A.K., Panicucci, B., Igo, R.P. Jr., Wirtz, E., Salavati, R., and Stuart, K. (2001) An RNA ligase essential for RNA editing and survival of the bloodstream form of Trypanosoma brucei . Science, 291, 2159-2162.
-
(2001)
Science
, vol.291
, pp. 2159-2162
-
-
Schnaufer, A.1
Panigrahi, A.K.2
Panicucci, B.3
Igo, R.P.4
Wirtz, E.5
Salavati, R.6
Stuart, K.7
-
46
-
-
0015408606
-
Purification and properties of bacteriophage T4-induced RNA ligase
-
Silber, R., Malathi, V.G., and Hurwitz, J. (1972) Purification and properties of bacteriophage T4-induced RNA ligase. Proc. Natl. Acad. Sci. U.S.A., 69, 3009-3013.
-
(1972)
Proc. Natl. Acad. Sci. U.S.A.
, vol.69
, pp. 3009-3013
-
-
Silber, R.1
Malathi, V.G.2
Hurwitz, J.3
-
47
-
-
0016296346
-
Covalent joining of phenylalanine transfer ribonucleic acid half-molecules by T4 RNA ligase
-
Kaufmann, G. and Littauer, U.Z. (1974) Covalent joining of phenylalanine transfer ribonucleic acid half-molecules by T4 RNA ligase. Proc. Natl. Acad. Sci. U.S.A., 71, 3741-3745.
-
(1974)
Proc. Natl. Acad. Sci. U.S.A.
, vol.71
, pp. 3741-3745
-
-
Kaufmann, G.1
Littauer, U.Z.2
-
48
-
-
0016429796
-
T4-induced RNA ligase joins single-stranded oligoribonucleotides
-
Walker, G.C., Uhlenbeck, O.C., Bedows, E., and Gumport, R.I. (1975) T4-induced RNA ligase joins single-stranded oligoribonucleotides. Proc. Natl. Acad. Sci. U.S.A., 72, 122-126.
-
(1975)
Proc. Natl. Acad. Sci. U.S.A.
, vol.72
, pp. 122-126
-
-
Walker, G.C.1
Uhlenbeck, O.C.2
Bedows, E.3
Gumport, R.I.4
-
49
-
-
0023388202
-
Bacteriophage T4 anticodon nuclease, polynucleotide kinase and RNA ligase reprocess the host lysine tRNA
-
Amitsur, M., Levitz, R., and Kaufmann, G. (1987) Bacteriophage T4 anticodon nuclease, polynucleotide kinase and RNA ligase reprocess the host lysine tRNA. EMBO J., 6, 2499-2503.
-
(1987)
EMBO J.
, vol.6
, pp. 2499-2503
-
-
Amitsur, M.1
Levitz, R.2
Kaufmann, G.3
-
50
-
-
0028293824
-
The Escherichia coli prr region encodes a functional type IC DNA restriction system closely integrated with an anticodon nuclease gene
-
Tyndall, C., Meister, J., and Bickle, T.A. (1994) The Escherichia coli prr region encodes a functional type IC DNA restriction system closely integrated with an anticodon nuclease gene. J. Mol. Biol., 237, 266-274.
-
(1994)
J. Mol. Biol.
, vol.237
, pp. 266-274
-
-
Tyndall, C.1
Meister, J.2
Bickle, T.A.3
-
51
-
-
0016214623
-
T4 RNA ligase: substrate chain length requirements
-
Kaufmann, G., Klein, T., and Littauer, U.Z. (1974) T4 RNA ligase: substrate chain length requirements. FEBS Lett., 46, 271-275.
-
(1974)
FEBS Lett.
, vol.46
, pp. 271-275
-
-
Kaufmann, G.1
Klein, T.2
Littauer, U.Z.3
-
52
-
-
0016741935
-
Determination of recognition sites of T4 RNA ligase on the 3_ -OH and 5_ -P termini of polyribonucleotide chains
-
Kaufmann, G. and Kallenbach, N.R. (1975) Determination of recognition sites of T4 RNA ligase on the 3_ -OH and 5_ -P termini of polyribonucleotide chains. Nature, 254, 452-454.
-
(1975)
Nature
, vol.254
, pp. 452-454
-
-
Kaufmann, G.1
Kallenbach, N.R.2
-
53
-
-
0017333769
-
Bacteriophage T4 RNA ligase. Reaction intermediates and interaction of substrates
-
Sugino, A., Snopek, T.J., and Cozzarelli, N.R. (1977) Bacteriophage T4 RNA ligase. Reaction intermediates and interaction of substrates. J. Biol. Chem., 252, 1732-1738.
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 1732-1738
-
-
Sugino, A.1
Snopek, T.J.2
Cozzarelli, N.R.3
-
54
-
-
0017889065
-
Enzymatic oligoribonucleotide synthesis with T4 RNA ligase
-
England, T.E. and Uhlenbeck, O.C. (1978) Enzymatic oligoribonucleotide synthesis with T4 RNA ligase. Biochemistry, 17, 2069-2076.
-
(1978)
Biochemistry
, vol.17
, pp. 2069-2076
-
-
England, T.E.1
Uhlenbeck, O.C.2
-
55
-
-
0020164793
-
The effect of acceptor oligoribonucleotide sequence on the T4 RNA ligase reaction
-
Romaniuk, E., McLaughlin, L.W., Neilson, T., and Romaniuk, P.J. (1982) The effect of acceptor oligoribonucleotide sequence on the T4 RNA ligase reaction. Eur. J. Biochem., 125, 639-643.
-
(1982)
Eur. J. Biochem.
, vol.125
, pp. 639-643
-
-
Romaniuk, E.1
McLaughlin, L.W.2
Neilson, T.3
Romaniuk, P.J.4
-
56
-
-
0026687314
-
Regioselective ligation of oligoribonucleotides using DNA splints
-
Bain, J.D. and Switzer, C. (1992) Regioselective ligation of oligoribonucleotides using DNA splints. Nucleic Acids Res., 20, 4372.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 4372
-
-
Bain, J.D.1
Switzer, C.2
-
57
-
-
0034119509
-
Several dinucleoside polyphosphates are acceptor substrates in the T4 RNA ligase catalyzed reaction
-
Atencia, E.A., Montes, M., Sillero, M.A.G., and Sillero, A. (2000) Several dinucleoside polyphosphates are acceptor substrates in the T4 RNA ligase catalyzed reaction. Eur. J. Biochem., 267, 1707-1714.
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 1707-1714
-
-
Atencia, E.A.1
Montes, M.2
Sillero, M.A.G.3
Sillero, A.4
-
58
-
-
0018116735
-
T4 RNA Ligase joins 2_-deoxyribonucleoside 3_,5_-bisphosphates to oligodeoxyribonucleotides
-
Hinton, D.M., Baez, J.A., and Gumport, R.I. (1978) T4 RNA Ligase joins 2_-deoxyribonucleoside 3_,5_-bisphosphates to oligodeoxyribonucleotides. Biochemistry, 17, 5091-5097.
-
(1978)
Biochemistry
, vol.17
, pp. 5091-5097
-
-
Hinton, D.M.1
Baez, J.A.2
Gumport, R.I.3
-
59
-
-
0019328550
-
T4 ribonucleic acid ligase joins single-strand oligo(deoxyribonucleotides)
-
McCoy, M.I. and Gumport, R.I. (1980) T4 ribonucleic acid ligase joins single-strand oligo(deoxyribonucleotides). Biochemistry, 19, 635-642.
-
(1980)
Biochemistry
, vol.19
, pp. 635-642
-
-
McCoy, M.I.1
Gumport, R.I.2
-
60
-
-
0018125212
-
Reactions at the termini of tRNA with T4 RNA ligase
-
Bruce, A.G. and Uhlenbeck, O.C. (1978) Reactions at the termini of tRNA with T4 RNA ligase. Nucleic Acids Res., 5, 3665-3677.
-
(1978)
Nucleic Acids Res.
, vol.5
, pp. 3665-3677
-
-
Bruce, A.G.1
Uhlenbeck, O.C.2
-
61
-
-
0030024097
-
Nonradioactive labeling of RNA
-
Igloi, G.L. (1996) Nonradioactive labeling of RNA. Anal. Biochem., 233, 124-129.
-
(1996)
Anal. Biochem.
, vol.233
, pp. 124-129
-
-
Igloi, G.L.1
-
62
-
-
0342697544
-
Libraries of multifunctional RNA conjugates for the selection of new RNA catalysts
-
Hausch, F. and Jäschke, A. (1997) Libraries of multifunctional RNA conjugates for the selection of new RNA catalysts. Bioconjug. Chem., 8, 885-890.
-
(1997)
Bioconjug. Chem.
, vol.8
, pp. 885-890
-
-
Hausch, F.1
Jäschke, A.2
-
63
-
-
0030804068
-
Fluorescence-, isotope- or biotin-labeling of the 5_-end of single-stranded DNA/RNA using T4 RNA ligase
-
Kinoshita, Y., Nishigaki, K., and Husimi, Y. (1997) Fluorescence-, isotope- or biotin-labeling of the 5_-end of single-stranded DNA/RNA using T4 RNA ligase. Nucleic Acids Res., 25, 3747-3748.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3747-3748
-
-
Kinoshita, Y.1
Nishigaki, K.2
Husimi, Y.3
-
64
-
-
0026551718
-
In vitro synthesis of an infectious viroid:analysis of the infectivity of monomeric linear CEV
-
Rigden, J.E. and Rezaian, M.A. (1992) In vitro synthesis of an infectious viroid:analysis of the infectivity of monomeric linear CEV. Virology, 186, 201-206.
-
(1992)
Virology
, vol.186
, pp. 201-206
-
-
Rigden, J.E.1
Rezaian, M.A.2
-
65
-
-
0035261910
-
CEVd-induced symptom modification as a response to a host-specific temperature-sensitive reaction
-
Skoric, D., Conerly, M., Szychowski, J.A., and Semancik, J.S. (2001) CEVd-induced symptom modification as a response to a host-specific temperature-sensitive reaction. Virology, 280, 115-123.
-
(2001)
Virology
, vol.280
, pp. 115-123
-
-
Skoric, D.1
Conerly, M.2
Szychowski, J.A.3
Semancik, J.S.4
-
66
-
-
0032524092
-
Oligoribonucleotide circularization by 'template-mediated' ligation with T4 RNA ligase: synthesis of circular hammerhead ribozymes
-
Wang, L. and Ruffner, D.E. (1998) Oligoribonucleotide circularization by 'template-mediated' ligation with T4 RNA ligase: synthesis of circular hammerhead ribozymes. Nucleic Acids Res., 26, 2502-2504.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 2502-2504
-
-
Wang, L.1
Ruffner, D.E.2
-
67
-
-
0032227473
-
Y-ligation: an efficient method for ligating single-stranded DNAs and RNAs with T4 RNA ligase
-
Nishigaki, K., Taguchi, K., Kinoshita, Y., Aita, T., and Husimi, Y. (1998) Y-ligation: an efficient method for ligating single-stranded DNAs and RNAs with T4 RNA ligase. Mol. Divers., 4, 187-190.
-
(1998)
Mol. Divers.
, vol.4
, pp. 187-190
-
-
Nishigaki, K.1
Taguchi, K.2
Kinoshita, Y.3
Aita, T.4
Husimi, Y.5
-
68
-
-
84889394885
-
Effect of Unpaired Terminal Nucleotides of Substrate RNAs on the RNA Ligation with T4 RNA Ligase
-
Sugimoto, N., Matsumura, A., Hasegawa, K., and Sasaki, M. (1991) Effect of Unpaired Terminal Nucleotides of Substrate RNAs on the RNA Ligation with T4 RNA Ligase. Bull. Chem. Soc. Jpn., 64, 2978-2982.
-
(1991)
Bull. Chem. Soc. Jpn.
, vol.64
, pp. 2978-2982
-
-
Sugimoto, N.1
Matsumura, A.2
Hasegawa, K.3
Sasaki, M.4
-
69
-
-
0035954304
-
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
-
Argaman, L., Hershberg, R., Vogel, J., Bejerano, G., Wagner, E.G.H., Margalit, H., and Altuvia, S. (2001) Novel small RNA-encoding genes in the intergenic regions of Escherichia coli . Curr. Biol., 11, 941-950.
-
(2001)
Curr. Biol.
, vol.11
, pp. 941-950
-
-
Argaman, L.1
Hershberg, R.2
Vogel, J.3
Bejerano, G.4
Wagner, E.G.H.5
Margalit, H.6
Altuvia, S.7
-
70
-
-
0027381917
-
Mapping the 5_ and 3_ ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE)
-
Liu, X. and Gorovsky, M.A. (1993) Mapping the 5_ and 3_ ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE). Nucleic Acids Res., 21, 4954-4960.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 4954-4960
-
-
Liu, X.1
Gorovsky, M.A.2
-
71
-
-
0031822040
-
Stable isotope-edited NMR analysis of Ascaris suum mitochondrial tRNAMet having a TV-replacement loop
-
Ohtsuki, T., Kawai, G., and Watanabe, K. (1998) Stable isotope-edited NMR analysis of Ascaris suum mitochondrial tRNAMet having a TV-replacement loop. J. Biochem., 124, 28-34.
-
(1998)
J. Biochem.
, vol.124
, pp. 28-34
-
-
Ohtsuki, T.1
Kawai, G.2
Watanabe, K.3
-
72
-
-
0040286134
-
Determination of 2_-hydroxyl and phosphate groups important for aminoacylation of Escherichia coli tRNAAsp: a nucleotide analogue interference study
-
Vörtler, C.S., Fedorova, O., Persson, T., Kutzke, U., and Eckstein, F. (1998) Determination of 2_-hydroxyl and phosphate groups important for aminoacylation of Escherichia coli tRNAAsp: a nucleotide analogue interference study. RNA, 4, 1444-1454.
-
(1998)
RNA
, vol.4
, pp. 1444-1454
-
-
Vörtler, C.S.1
Fedorova, O.2
Persson, T.3
Kutzke, U.4
Eckstein, F.5
-
73
-
-
0035174911
-
Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization
-
Sherlin, L.D., Bullock, T.L., Nissan, T.A., Perona, J.J., Lariviere, F.J., Uhlenbeck, O.C., and Scaringe, S.A. (2001) Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization. RNA, 7, 1671-1678.
-
(2001)
RNA
, vol.7
, pp. 1671-1678
-
-
Sherlin, L.D.1
Bullock, T.L.2
Nissan, T.A.3
Perona, J.J.4
Lariviere, F.J.5
Uhlenbeck, O.C.6
Scaringe, S.A.7
-
74
-
-
0242321976
-
Catalysis by RNase P RNA:unique features and unprecedented active site plasticity
-
Persson, T., Cuzic, S., and Hartmann, R.K. (2003) Catalysis by RNase P RNA:unique features and unprecedented active site plasticity. J. Biol. Chem., 278, 43394-43401.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 43394-43401
-
-
Persson, T.1
Cuzic, S.2
Hartmann, R.K.3
-
75
-
-
34548107385
-
-
Wiley-VCH Verlag, Weinheim, Germany
-
Persson, T., Willkomm, D.K., and Hartmann, R.K. (2005) Handbook of RNA Biochemistry, Wiley-VCH Verlag, Weinheim, Germany, pp. 53-74.
-
(2005)
Handbook of RNA Biochemistry
, pp. 53-74
-
-
Persson, T.1
Willkomm, D.K.2
Hartmann, R.K.3
-
76
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
77
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker, I.L. (2003) Vienna RNA secondary structure server. Nucleic Acids Res., 31, 3429-3431.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
|