Sculpting an RNA conformational energy landscape by a methyl group modification - A single-molecule FRET study

Angewandte Chemie - International Edition

Volumn 47, Issue 23, 2008, Pages 4326-4330

  Kobitski, Andrei Yu ^a   Hengesbach, Martin ^b   Helm, Mark ^b   Nienhaus, G Ulrich ^a,c  

^a UNIVERSITY OF ULM   (Germany)

^b UNIVERSITY OF HEIDELBERG   (Germany)

^c University of Illinois at Urbana Champaign   (United States)

Author keywords

Conformation analysis; FRET (fluorescence resonance energy transfer); RNA; Single molecule studies; Thermodynamic analysis

Indexed keywords

AMINO ACIDS; CONFORMATIONS; HYDROCARBONS; NUCLEIC ACIDS;

CONFORMATION ANALYSIS; FRET (FLUORESCENCE RESONANCE ENERGY TRANSFER); SINGLE-MOLECULE STUDIES; THERMODYNAMIC ANALYSIS;

RNA;

LYSINE TRANSFER RNA; RNA; RNA, MITOCHONDRIAL;

ARTICLE; CHEMISTRY; CONFORMATION; FLUORESCENCE RESONANCE ENERGY TRANSFER; HUMAN; METHODOLOGY; THERMODYNAMICS;

FLUORESCENCE RESONANCE ENERGY TRANSFER; HUMANS; NUCLEIC ACID CONFORMATION; RNA; RNA, TRANSFER, LYS; THERMODYNAMICS;

EID: 46749085102     PISSN: 14337851     EISSN: None     Source Type: Journal    
DOI: 10.1002/anie.200705675     Document Type: Article

References (30)

1. D. Thirumalai, C. Hyeon, Biochemistry 2005, 44, 4957-4970.
2. P. Brion, E. Westhof, Annu. Rev. Biophys. Biomol. Struct. 1997, 26, 113-137.
3. J. N. Onuchic, Z. Luthey-Schulten, P. G. Wolynes, Annu. Rev. Phys. Chem. 1997, 48, 545-600.
4. M. Helm, Nucleic Acids Res. 2006, 34, 721-733.
5. M. A. Leehey, C. A. Squassoni, M. W. Friederich, J. B. Mills, P. J. Hagerman, Biochemistry 1995, 34, 16235-16239.
6. M. Helm, R. Giegé, C. Florentz, Biochemistry 1999, 38, 13338-13346.
7. M. Helm, G. Attardi, J. Mol. Biol. 2004, 337, 545-560.
8. F. Voigts-Hoffmann, M. Hengesbach, A. Y. Kobitski, A. van Aerschot, P. Herdewijn, G. U. Nienhaus, M. Helm, J. Am. Chem. Soc. 2007, 129, 13382-13383.
9. H. D. Kim, G. U. Nienhaus, T. Ha, J. W. Orr, J. R. Williamson, S. Chu, Proc. Natl. Acad. Sci. USA 2002, 99, 4284-4289.
10. V. K. Misra, D. E. Draper, J. Mol. Biol. 2002, 317, 507-521.
11. G. U. Nienhaus, Macromol. Biosci. 2006, 6, 907-922.
12. A. Y. Kobitski, A. Nierth, M. Helm, A. Jäschke, G. U. Nienhaus, Nucleic Acids Res. 2007, 35, 2047-2059.
13. A. N. Kapanidis, N. K. Lee, T. A. Laurence, S. Doose, E. Margeat, S. Weiss, Proc. Natl. Acad. Sci. USA 2004, 101, 8936-8941.
14. B. K. Müller, E. Zaychikov, C. Bräuchle, D. C. Lamb, Biophys. J. 2005, 89, 3508-3522.
15. X. W. Fang, T. Pan, T. R. Sosnick, Nat. Struct. Biol. 1999, 6, 1091-1095.
16. R. Russell, X. Zhuang, H. P. Babcock, I. S. Millett, S. Doniach, S. Chu, D. Herschlag, Proc. Natl. Acad. Sci. USA 2002, 99, 155-160.
17. G. Bokinsky, D. Rueda, V. K. Misra, M. M. Rhodes, A. Gordus, H. P. Babcock, N. G. Walter, X. Zhuang, Proc. Natl. Acad. Sci. USA 2003, 100, 9302-9307.
18. D. Grilley, A. M. Soto, D. E. Draper, Proc. Natl. Acad. Sci. USA 2006, 103, 14003-14008.
19. B. Schuler, E. A. Lipman, W. A. Eaton, Nature 2002, 419, 743-747.
20. E. V. Kuzmenkina, C. D. Heyes, G. U. Nienhaus, J. Mol. Biol. 2006, 357, 313-324.
21. E. V. Kuzmenkina, C. D. Heyes, G. U. Nienhaus, Proc. Natl. Acad. Sci. USA 2005, 102, 15471-15476.
22. Y. Ishii, T. Yoshida, T. Funatsu, T. Wazawa, T. Yanagida, Chem. Phys. 1999, 247, 163-173.
23. O. Coban, D. C. Lamb, E. Zaychikov, H. Heumann, G. U. Nienhaus, Biophys. J. 2006, 90, 4605-4617.
24. H. Shi, P. B. Moore, RNA 2000, 6, 1091-1105.
25. M. Helm, H. Brul P, F. Degoul, C. Cepanec, J. P. Leroux, R. Giegé, C. Florentz, Nucleic Acids Res. 1998, 26, 1636-1643.
26. B. Schuler, ChemPhysChem 2005, 6, 1206-1220.
27. D. E. Draper, D. Grilley, A. M. Soto, Annu. Rev. Biophys. Biomol. Struct. 2005, 34, 221-243.
28. P. F. Agris, H. Sierzputowska-Gracz, C. Smith, Biochemistry 1986, 25, 5126-5131.
29. W. C. Kurschat, J. Müller, R. Wombacher, M. Helm, RNA 2005, 11, 1909-1914.
30. E. V. Amirgoulova, J. Groll, C. D. Heyes, T. Ameringer, C. Röcker, M. Möller, G. U. Nienhaus, ChemPhysChem 2004, 5, 552-555.