-
1
-
-
65649084852
-
Live cell imaging for target and drug discovery
-
Watson P. Live cell imaging for target and drug discovery. Drug News Perspect. 2009;22(2):69-79.
-
(2009)
Drug News Perspect
, vol.22
, Issue.2
, pp. 69-79
-
-
Watson, P.1
-
2
-
-
29944432478
-
The burden of age-related macular degeneration: a value-based medicine analysis
-
Brown GC, Brown MM, Sharma S, Stein JD, Roth Z, Campanella J, et al. The burden of age-related macular degeneration: a value-based medicine analysis. Trans Am Ophthalmol Soc. 2005;103:173-84. discussion 184-186.
-
(2005)
Trans Am Ophthalmol Soc
, vol.103
, pp. 173-184
-
-
Brown, G.C.1
Brown, M.M.2
Sharma, S.3
Stein, J.D.4
Roth, Z.5
Campanella, J.6
-
4
-
-
0037418911
-
Informatics and quantitative analysis in biological imaging
-
Swedlow JR, Goldberg I, Brauner E, Sorger PK. Informatics and quantitative analysis in biological imaging. Science (New York, NY). 2003;300:100-2.
-
(2003)
Science (New York, NY)
, vol.300
, pp. 100-102
-
-
Swedlow, J.R.1
Goldberg, I.2
Brauner, E.3
Sorger, P.K.4
-
5
-
-
84991837501
-
-
Cell Stains
-
Cell Stains [ http://www.lifetechnologies.com/order/catalog/en/US/adirect/lt?cmd=IVGNcatDisplayCategory&catKey=68901 )].
-
-
-
-
6
-
-
4243089813
-
A new classification scheme of science fields and subfields designed for scientometric evaluation purposes
-
Glanzel W, Schubert A. A new classification scheme of science fields and subfields designed for scientometric evaluation purposes. Scientometrics. 2003;56:357-67.
-
(2003)
Scientometrics
, vol.56
, pp. 357-367
-
-
Glanzel, W.1
Schubert, A.2
-
7
-
-
55349134773
-
-
Fraunhofer-Institut für Techno- undWirtschaftsmathematik, Kaiserslautern, Germany, Last time accessed: 10-12-2015.
-
Wirjadi O. Report: Survey of 3D Image Segmentation Methods. Fraunhofer-Institut für Techno- undWirtschaftsmathematik, Kaiserslautern, Germany, 2007: 1-29; ISSN 1434-9973; https://kluedo.ub.unikl.de/files/1978/bericht123.pdf ; Last time accessed: 10-12-2015.
-
(2007)
Report: Survey of 3D Image Segmentation Methods.
, pp. 1-29
-
-
Wirjadi, O.1
-
8
-
-
84929178756
-
-
University of Zagreb, Zagreb, Croatia; Last time accessed: 10-12-2015.
-
Kalinic H. Report: Atlas-Based Image Segmentation: A Survey. University of Zagreb, Zagreb, Croatia; 2008:1-7. http://bib.irb.hr/datoteka/435355.jnrl.pdf ; Last time accessed: 10-12-2015.
-
(2008)
Report: Atlas-Based Image Segmentation: A Survey.
, pp. 1-7
-
-
Kalinic, H.1
-
9
-
-
0030216623
-
A survey on evaluation methods for image segmentation
-
Zhang Y. A survey on evaluation methods for image segmentation. Pattern Recogn. 1996;29:1335-46.
-
(1996)
Pattern Recogn
, vol.29
, pp. 1335-1346
-
-
Zhang, Y.1
-
10
-
-
79959538800
-
Comparison of segmentation algorithms for fluorescence microscopy images of cells
-
Dima AA, Elliott JT, Filliben JJ, Halter M, Peskin A, Bernal J, et al. Comparison of segmentation algorithms for fluorescence microscopy images of cells. Cytometry Part A: the journal of the International Society for Analytical Cytology. 2011;79:545-59.
-
(2011)
Cytometry Part A: the journal of the International Society for Analytical Cytology
, vol.79
, pp. 545-559
-
-
Dima, A.A.1
Elliott, J.T.2
Filliben, J.J.3
Halter, M.4
Peskin, A.5
Bernal, J.6
-
11
-
-
38649100599
-
Quantifying myosin light chain phosphorylation in single adherent cells with automated fluorescence microscopy
-
Bhadriraju K, Elliott JT, Nguyen M, Plant AL. Quantifying myosin light chain phosphorylation in single adherent cells with automated fluorescence microscopy. BMC Cell Biol. 2007;8:43.
-
(2007)
BMC Cell Biol
, vol.8
, pp. 43
-
-
Bhadriraju, K.1
Elliott, J.T.2
Nguyen, M.3
Plant, A.L.4
-
12
-
-
29944435174
-
Seeing is believing? A beginners' guide to practical pitfalls in image acquisition
-
North AJ. Seeing is believing? A beginners' guide to practical pitfalls in image acquisition. J Cell Biol. 2006;172:9-18.
-
(2006)
J Cell Biol
, vol.172
, pp. 9-18
-
-
North, A.J.1
-
13
-
-
84896381325
-
A review of reagents for fluorescence microscopy of cellular compartments and structures, part I: BacMam labeling and reagents for vesicular structures
-
Chapter 12, Unit 12.30
-
Dolman NJ, Kilgore JA, Davidson MW. A review of reagents for fluorescence microscopy of cellular compartments and structures, part I: BacMam labeling and reagents for vesicular structures. Current protocols in cytometry / editorial board, J Paul Robinson, managing editor [et al]. 2013;Chapter 12(July):Unit 12.30.
-
(2013)
Current protocols in cytometry / editorial board, J Paul Robinson, managing editor [et al]
, Issue.JULY
-
-
Dolman, N.J.1
Kilgore, J.A.2
Davidson, M.W.3
-
14
-
-
84896323781
-
A review of reagents for fluorescence microscopy of cellular compartments and structures, Part II: reagents for non-vesicular organelles
-
October, Unit 12.31
-
Kilgore JA, Dolman NJ, Davidson MW. A review of reagents for fluorescence microscopy of cellular compartments and structures, Part II: reagents for non-vesicular organelles. Current protocols in cytometry / editorial board, J Paul Robinson, managing editor [et al]. 2013;66(October):Unit 12.31.
-
(2013)
Current protocols in cytometry / editorial board, J Paul Robinson, managing editor [et al]
, vol.66
-
-
Kilgore, J.A.1
Dolman, N.J.2
Davidson, M.W.3
-
15
-
-
84905674463
-
A review of reagents for fluorescence microscopy of cellular compartments and structures, Part III: reagents for actin, tubulin, cellular membranes, and whole cell and cytoplasm
-
January, Unit 12.32
-
Kilgore JA, Dolman NJ, Davidson MW. A review of reagents for fluorescence microscopy of cellular compartments and structures, Part III: reagents for actin, tubulin, cellular membranes, and whole cell and cytoplasm. Current protocols in cytometry / editorial board, J Paul Robinson, managing editor [et al]. 2014;67(January):Unit 12.32.
-
(2014)
Current protocols in cytometry / editorial board, J Paul Robinson, managing editor [et al]
, vol.67
-
-
Kilgore, J.A.1
Dolman, N.J.2
Davidson, M.W.3
-
16
-
-
39049185794
-
Reagents to measure and manipulate cell functions.
-
Edited by D. L. Taylor, J. R. Haskins and KG.;
-
Giuliano K, Taylor D, Waggoner A. Reagents to measure and manipulate cell functions. In Methods in Molecular Biology. Volume 356. Edited by D. L. Taylor, J. R. Haskins and KG. Humana Press, Inc.; 2006:141-162.
-
(2006)
In Methods in Molecular Biology. Humana Press, Inc.
, vol.356
, pp. 141-162
-
-
Giuliano, K.1
Taylor, D.2
Waggoner, A.3
-
17
-
-
51849116864
-
Cyclic olefin polymers: innovative materials for high-density multiwell plates
-
Niles WD, Coassin PJ. Cyclic olefin polymers: innovative materials for high-density multiwell plates. Assay Drug Dev Technol. 2008;6:577-90.
-
(2008)
Assay Drug Dev Technol
, vol.6
, pp. 577-590
-
-
Niles, W.D.1
Coassin, P.J.2
-
18
-
-
84885385963
-
Assay Development Guidelines for Image-Based High Content Screening, High Content Analysis and High Content Imaging.
-
In: Sittampalam G, Coussens N, Nelson H, editors. Volume Intenet. Bethesda, MD: Eli Lilly & Company and the National Center for Advancing Translational Sciences;
-
Buchser W, Collins M, Garyantes T, Guha R, Haney S, Lemmon V, et al. Assay Development Guidelines for Image-Based High Content Screening, High Content Analysis and High Content Imaging. In: Sittampalam G, Coussens N, Nelson H, editors. Assay Guidance Manual. Volume Intenet. Bethesda, MD: Eli Lilly & Company and the National Center for Advancing Translational Sciences; 2014. p. 1-71.
-
(2014)
Assay Guidance Manual.
, pp. 1-71
-
-
Buchser, W.1
Collins, M.2
Garyantes, T.3
Guha, R.4
Haney, S.5
Lemmon, V.6
-
23
-
-
83755228921
-
New concepts for building vocabulary for cell image ontologies
-
Plant AL, Elliott JT, Bhat TN. New concepts for building vocabulary for cell image ontologies. BMC Bioinformatics. 2011;12:487.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 487
-
-
Plant, A.L.1
Elliott, J.T.2
Bhat, T.N.3
-
24
-
-
84930744382
-
ProtocolNavigator: emulation-based software for the design, documentation and reproduction biological experiments
-
Khan I, Fraser A, Bray M-A, Smith PJ, White NS, Carpenter AE, et al. ProtocolNavigator: emulation-based software for the design, documentation and reproduction biological experiments. Bioinformatics (Oxford, England). 2014;30:3440-2.
-
(2014)
Bioinformatics (Oxford, England)
, vol.30
, pp. 3440-3442
-
-
Khan, I.1
Fraser, A.2
Bray, M.-A.3
Smith, P.J.4
White, N.S.5
Carpenter, A.E.6
-
25
-
-
28544447780
-
The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
-
Goldberg IG, Allan C, Burel J-M, Creager D, Falconi A, Hochheiser H, et al. The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome Biol. 2005;6:R47.
-
(2005)
Genome Biol
, vol.6
, pp. R47
-
-
Goldberg, I.G.1
Allan, C.2
Burel, J.-M.3
Creager, D.4
Falconi, A.5
Hochheiser, H.6
-
26
-
-
84863208608
-
Biological imaging software tools
-
Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, et al. Biological imaging software tools. Nat Methods. 2012;9:697-710.
-
(2012)
Nat Methods
, vol.9
, pp. 697-710
-
-
Eliceiri, K.W.1
Berthold, M.R.2
Goldberg, I.G.3
Ibáñez, L.4
Manjunath, B.S.5
Martone, M.E.6
-
27
-
-
84859169880
-
Drug development: raise standards for preclinical cancer research
-
Begley CG, Ellis LM. Drug development: raise standards for preclinical cancer research. Nature. 2012;483:531-3.
-
(2012)
Nature
, vol.483
, pp. 531-533
-
-
Begley, C.G.1
Ellis, L.M.2
-
28
-
-
84877752060
-
A survey on data reproducibility in cancer research provides insights into our limited ability to translate findings from the laboratory to the clinic
-
Mobley A, Linder S, Braeuer R, Ellis L, Zwelling L. A survey on data reproducibility in cancer research provides insights into our limited ability to translate findings from the laboratory to the clinic. PLoS One. 2013;8:3-6.
-
(2013)
PLoS One
, vol.8
, pp. 3-6
-
-
Mobley, A.1
Linder, S.2
Braeuer, R.3
Ellis, L.4
Zwelling, L.5
-
29
-
-
44349162752
-
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
-
Chang HH, Hemberg M, Barahona M, Ingber DE, Huang S. Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature. 2008;453(May):4-8.
-
(2008)
Nature
, vol.453
, Issue.MAY
, pp. 4-8
-
-
Chang, H.H.1
Hemberg, M.2
Barahona, M.3
Ingber, D.E.4
Huang, S.5
-
30
-
-
84904460344
-
Dynamic heterogeneity and DNA methylation in embryonic stem cells
-
Singer ZS, Yong J, Tischler J, Hackett JA, Altinok A, Surani MA, et al. Dynamic heterogeneity and DNA methylation in embryonic stem cells. Mol Cell. 2014;55:319-31.
-
(2014)
Mol Cell
, vol.55
, pp. 319-331
-
-
Singer, Z.S.1
Yong, J.2
Tischler, J.3
Hackett, J.A.4
Altinok, A.5
Surani, M.A.6
-
31
-
-
33745391854
-
Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins
-
Sigal A, Milo R, Cohen A, Geva-Zatorsky N, Klein Y, Alaluf I, et al. Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins. Nat Methods. 2006;3:525.
-
(2006)
Nat Methods
, vol.3
, pp. 525
-
-
Sigal, A.1
Milo, R.2
Cohen, A.3
Geva-Zatorsky, N.4
Klein, Y.5
Alaluf, I.6
-
32
-
-
0344088272
-
Thin films of collagen affect smooth muscle cell morphology
-
Elliott JT, Tona A, Woodward JT, Jones PL, Plant AL. Thin films of collagen affect smooth muscle cell morphology. Langmuir. 2003;19:1506-14.
-
(2003)
Langmuir
, vol.19
, pp. 1506-1514
-
-
Elliott, J.T.1
Tona, A.2
Woodward, J.T.3
Jones, P.L.4
Plant, A.L.5
-
33
-
-
35348981375
-
Automated live cell imaging of green fluorescent protein degradation in individual fibroblasts
-
Halter M, Tona A, Bhadriraju K, Plant AL, Elliott JT. Automated live cell imaging of green fluorescent protein degradation in individual fibroblasts. Cytometry Part A: the journal of the International Society for Analytical Cytology. 2007;71:827-34.
-
(2007)
Cytometry Part A: the journal of the International Society for Analytical Cytology
, vol.71
, pp. 827-834
-
-
Halter, M.1
Tona, A.2
Bhadriraju, K.3
Plant, A.L.4
Elliott, J.T.5
-
34
-
-
56549093013
-
Potency and fate specification in CNS stem cell populations in vitro
-
Ravin R, Hoeppner DJ, Munno DM, Carmel L, Sullivan J, Levitt DL, et al. Potency and fate specification in CNS stem cell populations in vitro. Cell Stem Cell. 2008;3:670-80.
-
(2008)
Cell Stem Cell
, vol.3
, pp. 670-680
-
-
Ravin, R.1
Hoeppner, D.J.2
Munno, D.M.3
Carmel, L.4
Sullivan, J.5
Levitt, D.L.6
-
35
-
-
0035941075
-
Taking cell-matrix adhesions to the third dimension
-
Cukierman E, Pankov R, Stevens DR, Yamada KM. Taking cell-matrix adhesions to the third dimension. Science (New York, NY). 2001;294:1708-12.
-
(2001)
Science (New York, NY)
, vol.294
, pp. 1708-1712
-
-
Cukierman, E.1
Pankov, R.2
Stevens, D.R.3
Yamada, K.M.4
-
36
-
-
0032877311
-
Cell volume measurements by fluorescence confocal microscopy: theoretical and practical aspects
-
Blatter LA. Cell volume measurements by fluorescence confocal microscopy: theoretical and practical aspects. Methods Enzymology. 1999;307:274-95.
-
(1999)
Methods Enzymology
, vol.307
, pp. 274-295
-
-
Blatter, L.A.1
-
37
-
-
84871051963
-
Three-dimensional cell morphometry for the quantification of cell-substrate interactions
-
Shaw M, Faruqui N, Gurdak E, Tomlins P. Three-dimensional cell morphometry for the quantification of cell-substrate interactions. Tissue engineering Part C, Methods. 2013;19:48-56.
-
(2013)
Tissue engineering Part C, Methods
, vol.19
, pp. 48-56
-
-
Shaw, M.1
Faruqui, N.2
Gurdak, E.3
Tomlins, P.4
-
38
-
-
33846487897
-
Determining refractive index of single living cell using an integrated microchip
-
Liang XJ, Liu AQ, Lim CS, Ayi TC, Yap PH. Determining refractive index of single living cell using an integrated microchip. Sensors Actuators A Phys. 2007;133:349-54.
-
(2007)
Sensors Actuators A Phys
, vol.133
, pp. 349-354
-
-
Liang, X.J.1
Liu, A.Q.2
Lim, C.S.3
Ayi, T.C.4
Yap, P.H.5
-
39
-
-
84876708809
-
Highly sensitive refractive index measurement with a sandwiched single-flow-channel microfluidic chip
-
Chaitavon K, Sumriddetchkajorn S, Nukeaw J. Highly sensitive refractive index measurement with a sandwiched single-flow-channel microfluidic chip. RSC Advances. 2013;3:6981.
-
(2013)
RSC Advances
, vol.3
, pp. 6981
-
-
Chaitavon, K.1
Sumriddetchkajorn, S.2
Nukeaw, J.3
-
41
-
-
84879983002
-
Survey of contemporary trends in color image segmentation
-
Vantaram SR, Saber E. Survey of contemporary trends in color image segmentation. J Electronic Imaging. 2012;21:040901-1.
-
(2012)
J Electronic Imaging
, vol.21
-
-
Vantaram, S.R.1
Saber, E.2
-
42
-
-
32244445804
-
Automated cell lineage construction: a rapid method to analyze clonal development established with murine neural progenitor cells
-
Al-Kofahi O, Radke RJ, Goderie SK, Shen Q, Temple S, Roysam B. Automated cell lineage construction: a rapid method to analyze clonal development established with murine neural progenitor cells. Cell cycle (Georgetown, Tex). 2006;5:327-35.
-
(2006)
Cell cycle (Georgetown, Tex)
, vol.5
, pp. 327-335
-
-
Al-Kofahi, O.1
Radke, R.J.2
Goderie, S.K.3
Shen, Q.4
Temple, S.5
Roysam, B.6
-
45
-
-
84991873297
-
Principles and applications of differential interference contrast light microscopy
-
Way D. Principles and applications of differential interference contrast light microscopy. Microscopy and Analysis; Light Microscopy Supplement. 2006;20:9-11.
-
(2006)
Microscopy and Analysis; Light Microscopy Supplement
, vol.20
, pp. 9-11
-
-
Way, D.1
-
46
-
-
27244450483
-
Single-particle tracking of murine polyoma virus-like particles on live cells and artificial membranes
-
Ewers H, Smith AE, Sbalzarini IF, Lilie H, Koumoutsakos P, Helenius A. Single-particle tracking of murine polyoma virus-like particles on live cells and artificial membranes. Proc Natl Acad Sci U S A. 2005;102:15110-5.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 15110-15115
-
-
Ewers, H.1
Smith, A.E.2
Sbalzarini, I.F.3
Lilie, H.4
Koumoutsakos, P.5
Helenius, A.6
-
47
-
-
33947355325
-
Single-cell quantification of molecules and rates using open-source microscope-based cytometry.
-
Gordon A, Colman-Lerner A, Chin TE, Benjamin KR, Yu RC, Brent R. Single-cell quantification of molecules and rates using open-source microscope-based cytometry. Nat Methods. 2007;175-181.
-
(2007)
Nat Methods.
, pp. 175-181
-
-
Gordon, A.1
Colman-Lerner, A.2
Chin, T.E.3
Benjamin, K.R.4
Yu, R.C.5
Brent, R.6
-
48
-
-
84870838145
-
Detection and tracking of cell divisions in phase contrast video microscopy.
-
New York, NY, USA: MICCAI;
-
Hadjidemetriou S, Gabrielli B, Mele K, Vallotton P. Detection and tracking of cell divisions in phase contrast video microscopy. In: Proc. of the Third MICCAI Worshop on Microscopic Image Analysis with Applications in Biology. New York, NY, USA: MICCAI; 2008.
-
(2008)
In: Proc. of the Third MICCAI Worshop on Microscopic Image Analysis with Applications in Biology.
-
-
Hadjidemetriou, S.1
Gabrielli, B.2
Mele, K.3
Vallotton, P.4
-
49
-
-
84881247986
-
Architecture of the osteocyte network correlates with bone material quality
-
Kerschnitzki M, Kollmannsberger P, Burghammer M, Duda GN, Weinkamer R, Wagermaier W, et al. Architecture of the osteocyte network correlates with bone material quality. J Bone Miner Res. 2013;28:1837-45.
-
(2013)
J Bone Miner Res
, vol.28
, pp. 1837-1845
-
-
Kerschnitzki, M.1
Kollmannsberger, P.2
Burghammer, M.3
Duda, G.N.4
Weinkamer, R.5
Wagermaier, W.6
-
50
-
-
10744223479
-
Computer-assisted enhanced volumetric segmentation magnetic resonance imaging data using a mixture of artificial neural networks
-
Pérez De Alejo R, Ruiz-Cabello J, Cortijo M, Rodriguez I, Echave I, Regadera J, et al. Computer-assisted enhanced volumetric segmentation magnetic resonance imaging data using a mixture of artificial neural networks. Magn Reson Imaging. 2003;21:901-12.
-
(2003)
Magn Reson Imaging
, vol.21
, pp. 901-912
-
-
Pérez De Alejo, R.1
Ruiz-Cabello, J.2
Cortijo, M.3
Rodriguez, I.4
Echave, I.5
Regadera, J.6
-
52
-
-
0035063579
-
An automated segmentation method for three-dimensional carotid ultrasound images
-
Zahalka A, Fenster A. An automated segmentation method for three-dimensional carotid ultrasound images. Phys Med Biol. 2001;46:1321-42.
-
(2001)
Phys Med Biol
, vol.46
, pp. 1321-1342
-
-
Zahalka, A.1
Fenster, A.2
-
53
-
-
41949100170
-
Image segmentation evaluation: a survey of unsupervised methods
-
Zhang H, Fritts JE, Goldman SA. Image segmentation evaluation: a survey of unsupervised methods. Comput Vis Image Underst. 2008;110:260-80.
-
(2008)
Comput Vis Image Underst
, vol.110
, pp. 260-280
-
-
Zhang, H.1
Fritts, J.E.2
Goldman, S.A.3
-
54
-
-
34548299771
-
A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope images
-
Lin G, Chawla MK, Olson K, Barnes CA, Guzowski JF, Bjornsson C, et al. A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope images. Cytometry Part A. 2007;71:724-36.
-
(2007)
Cytometry Part A
, vol.71
, pp. 724-736
-
-
Lin, G.1
Chawla, M.K.2
Olson, K.3
Barnes, C.A.4
Guzowski, J.F.5
Bjornsson, C.6
-
55
-
-
0348134935
-
A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks
-
Lin G, Adiga U, Olson K, Guzowski JF, Barnes CA, Roysam B. A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks. Cytometry Part A: the journal of the International Society for Analytical Cytology. 2003;56:23-36.
-
(2003)
Cytometry Part A: the journal of the International Society for Analytical Cytology
, vol.56
, pp. 23-36
-
-
Lin, G.1
Adiga, U.2
Olson, K.3
Guzowski, J.F.4
Barnes, C.A.5
Roysam, B.6
-
57
-
-
84863198418
-
Multiview light-sheet microscope for rapid in toto imaging
-
Krzic U, Gunther S, Saunders TE, Streichan SJ, Hufnagel L. Multiview light-sheet microscope for rapid in toto imaging. Nat Methods. 2012;9:730-3.
-
(2012)
Nat Methods
, vol.9
, pp. 730-733
-
-
Krzic, U.1
Gunther, S.2
Saunders, T.E.3
Streichan, S.J.4
Hufnagel, L.5
-
58
-
-
70749124218
-
A biosegmentation benchmark for evaluation of bioimage analysis methods
-
Gelasca ED, Obara B, Fedorov D, Kvilekval K, Manjunath B. A biosegmentation benchmark for evaluation of bioimage analysis methods. BMC Bioinformatics. 2009;10:368.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 368
-
-
Gelasca, E.D.1
Obara, B.2
Fedorov, D.3
Kvilekval, K.4
Manjunath, B.5
-
59
-
-
40649095676
-
The cell centered database project: an update on building community resources for managing and sharing 3D imaging data
-
Martone ME, Tran J, Wong WW, Sargis J, Fong L, Larson S, et al. The cell centered database project: an update on building community resources for managing and sharing 3D imaging data. J Struct Biol. 2008;161:220-31.
-
(2008)
J Struct Biol
, vol.161
, pp. 220-231
-
-
Martone, M.E.1
Tran, J.2
Wong, W.W.3
Sargis, J.4
Fong, L.5
Larson, S.6
-
60
-
-
19344368188
-
Genomic analysis of mouse retinal development
-
Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, et al. Genomic analysis of mouse retinal development. PLoS Biol. 2004;2, E247.
-
(2004)
PLoS Biol
, vol.2
-
-
Blackshaw, S.1
Harpavat, S.2
Trimarchi, J.3
Cai, L.4
Huang, H.5
Kuo, W.P.6
-
62
-
-
84888159747
-
Estimating the Number of Manually Segmented Cellular Objects Required to Evaluate the Accuracy of a Segmentation Algorithm.
-
New York, NY, USA: ACM;
-
Peskin A, Chalfoun J, Kafadar K, Elliott J. Estimating the Number of Manually Segmented Cellular Objects Required to Evaluate the Accuracy of a Segmentation Algorithm. In: Proceedings of ACM BCB. New York, NY, USA: ACM; 2013. p. 2 doi: 10.1145/2506583.2512384.
-
(2013)
In: Proceedings of ACM BCB.
, pp. 2
-
-
Peskin, A.1
Chalfoun, J.2
Kafadar, K.3
Elliott, J.4
-
63
-
-
3042547731
-
Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections
-
Wählby C, Sintorn I-M, Erlandsson F, Borgefors G, Bengtsson E. Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections. J Microsc. 2004;215:67-76.
-
(2004)
J Microsc
, vol.215
, pp. 67-76
-
-
Wählby, C.1
Sintorn, I.-M.2
Erlandsson, F.3
Borgefors, G.4
Bengtsson, E.5
-
64
-
-
84884937865
-
3D time series analysis of cell shape using Laplacian approaches
-
Du C, Hawkins P. 3D time series analysis of cell shape using Laplacian approaches. BMC Bioinformatics. 2013;14:296.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 296
-
-
Du, C.1
Hawkins, P.2
-
65
-
-
84883818286
-
Spline-based deforming ellipsoids for interactive 3D bioimage segmentation
-
Delgado-Gonzalo R, Chenouard N, Unser M. Spline-based deforming ellipsoids for interactive 3D bioimage segmentation. IEEE Trans Image Process. 2013;22:3926-40.
-
(2013)
IEEE Trans Image Process
, vol.22
, pp. 3926-3940
-
-
Delgado-Gonzalo, R.1
Chenouard, N.2
Unser, M.3
-
66
-
-
84881631316
-
A 3D Intensity Model Based on Spherical Harmonics For Automatic 3D Segmentation of Heterochromatin Foci.
-
Eck S, Rohr K, Biesdorf A, Katharina M-O, Rippe K, Stefan W. A 3D Intensity Model Based on Spherical Harmonics For Automatic 3D Segmentation of Heterochromatin Foci. San Francisco: 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro; 2013. p. 1484-7.
-
(2013)
San Francisco: 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro;
, pp. 1484-1487
-
-
Eck, S.1
Rohr, K.2
Biesdorf, A.3
Katharina, M.-O.4
Rippe, K.5
Stefan, W.6
-
67
-
-
65549116620
-
A unified framework for automated 3-d segmentation of surface-stained living cells and a comprehensive segmentation evaluation
-
Hodneland E, Bukoreshtliev NV, Eichler TW, Tai X-C, Gurke S, Lundervold A, et al. A unified framework for automated 3-d segmentation of surface-stained living cells and a comprehensive segmentation evaluation. IEEE Trans Med Imaging. 2009;28:720-38.
-
(2009)
IEEE Trans Med Imaging
, vol.28
, pp. 720-738
-
-
Hodneland, E.1
Bukoreshtliev, N.V.2
Eichler, T.W.3
Tai, X.-C.4
Gurke, S.5
Lundervold, A.6
-
68
-
-
79959616747
-
3-D active meshes: fast discrete deformable models for cell tracking in 3-D time-lapse microscopy
-
Dufour A, Thibeaux R, Labruyère E, Guillén N, Olivo-Marin J-C. 3-D active meshes: fast discrete deformable models for cell tracking in 3-D time-lapse microscopy. IEEE Trans Image Process. 2011;20:1925-37.
-
(2011)
IEEE Trans Image Process
, vol.20
, pp. 1925-1937
-
-
Dufour, A.1
Thibeaux, R.2
Labruyère, E.3
Guillén, N.4
Olivo-Marin, J.-C.5
-
69
-
-
77749279421
-
Advanced level-set-based cell tracking in time-lapse fluorescence microscopy
-
Dzyubachyk O, Van Cappellen WA, Essers J, Niessen WJ, Meijering E. Advanced level-set-based cell tracking in time-lapse fluorescence microscopy. IEEE Trans Med Imaging. 2010;29:852-67.
-
(2010)
IEEE Trans Med Imaging
, vol.29
, pp. 852-867
-
-
Dzyubachyk, O.1
Cappellen, W.A.2
Essers, J.3
Niessen, W.J.4
Meijering, E.5
-
70
-
-
79958279665
-
Gebiss: an ImageJ plugin for the specification of ground truth and the performance evaluation of 3D segmentation algorithms
-
Kriston-Vizi J, Thong NW, Poh CL, Yee KC, Ling JSP, Kraut R, et al. Gebiss: an ImageJ plugin for the specification of ground truth and the performance evaluation of 3D segmentation algorithms. BMC Bioinformatics. 2011;12:232.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 232
-
-
Kriston-Vizi, J.1
Thong, N.W.2
Poh, C.L.3
Yee, K.C.4
Ling, J.S.P.5
Kraut, R.6
-
72
-
-
84897907928
-
Fast segmentation of stained nuclei in terabyte-scale, time resolved 3D microscopy image stacks
-
Stegmaier J, Otte JC, Kobitski A, Bartschat A, Garcia A, Nienhaus GU, et al. Fast segmentation of stained nuclei in terabyte-scale, time resolved 3D microscopy image stacks. PLoS One. 2014;9, e90036.
-
(2014)
PLoS One
, vol.9
-
-
Stegmaier, J.1
Otte, J.C.2
Kobitski, A.3
Bartschat, A.4
Garcia, A.5
Nienhaus, G.U.6
-
73
-
-
84864626365
-
Algorithm selection based on a region similarity metric for intracellular image segmentation.
-
Edited by Dr Ho P-G. InTech;
-
Takemoto S, Yokota H. Algorithm selection based on a region similarity metric for intracellular image segmentation. In Image Segmentation. Edited by Dr Ho P-G. InTech; 2011:419-434.
-
(2011)
In Image Segmentation.
, pp. 419-434
-
-
Takemoto, S.1
Yokota, H.2
-
74
-
-
84901355271
-
A benchmark for comparison of cell tracking algorithms
-
Maška M, Ulman V, Svoboda D, Matula P, Matula P, Ederra C, et al. A benchmark for comparison of cell tracking algorithms. Bioinformatics. 2014;30:1609-17.
-
(2014)
Bioinformatics
, vol.30
, pp. 1609-1617
-
-
Maška, M.1
Ulman, V.2
Svoboda, D.3
Matula, P.4
Matula, P.5
Ederra, C.6
-
75
-
-
84955185567
-
A Method for the Evaluation of Thousands of Automated 3D Stem Cell Segmentations.
-
Bajcsy P, Simon M, Florczyk S, Simon C, Juba D, Brady M. A Method for the Evaluation of Thousands of Automated 3D Stem Cell Segmentations. Journal of Microscopy 2015:under review.
-
Journal of Microscopy 2015:under review.
-
-
Bajcsy, P.1
Simon, M.2
Florczyk, S.3
Simon, C.4
Juba, D.5
Brady, M.6
-
76
-
-
84894631471
-
Automated nucleus and cytoplasm segmentation of overlapping cervical cells.
-
Berlin Heidelberg: Lecture Notes in Computer Science; Springer-Verlag;
-
Lu Z, Carneiro G, Bradley A. Automated nucleus and cytoplasm segmentation of overlapping cervical cells. In: Medical Image Computing and Computer-Assisted Intervention (MICCAI). Volume 8149. Berlin Heidelberg: Lecture Notes in Computer Science; Springer-Verlag; 2013. p. 452-60.
-
(2013)
In: Medical Image Computing and Computer-Assisted Intervention (MICCAI).
, vol.8149
, pp. 452-460
-
-
Lu, Z.1
Carneiro, G.2
Bradley, A.3
-
77
-
-
84867839682
-
Overlapping cell nuclei segmentation using a spatially adaptive active physical model
-
Plissiti ME, Nikou C. Overlapping cell nuclei segmentation using a spatially adaptive active physical model. IEEE Trans Image Process. 2012;21:4568-80.
-
(2012)
IEEE Trans Image Process
, vol.21
, pp. 4568-4580
-
-
Plissiti, M.E.1
Nikou, C.2
-
78
-
-
84862520770
-
Fiji: an open-source platform for biological-image analysis
-
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, et al. Fiji: an open-source platform for biological-image analysis. Nat Methods. 2012;9:676-82.
-
(2012)
Nat Methods
, vol.9
, pp. 676-682
-
-
Schindelin, J.1
Arganda-Carreras, I.2
Frise, E.3
Kaynig, V.4
Longair, M.5
Pietzsch, T.6
-
79
-
-
84991906711
-
-
Schnabel R, Hutter H, Moerman D, Schnabel H. Assessing Normal Embryogenesis in Caenorhabditis elegans Using a 4D Microscope: Variability of Development and Regional Specification. 1997, 265:234-265.
-
(1997)
Assessing Normal Embryogenesis in Caenorhabditis elegans Using a 4D Microscope: Variability of Development and Regional Specification.
, vol.265
, pp. 234-265
-
-
Schnabel, R.1
Hutter, H.2
Moerman, D.3
Schnabel, H.4
-
80
-
-
84888875662
-
A survey of GPU-based medical image computing techniques
-
Shi L, Liu W, Zhang H, Xie Y, Wang D. A survey of GPU-based medical image computing techniques. Quantitative Imaging Med Surgery. 2012;2:188-206.
-
(2012)
Quantitative Imaging Med Surgery
, vol.2
, pp. 188-206
-
-
Shi, L.1
Liu, W.2
Zhang, H.3
Xie, Y.4
Wang, D.5
-
81
-
-
84884929912
-
An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy
-
Buggenthin F, Marr C, Schwarzfischer M, Hoppe PS, Hilsenbeck O, Schroeder T, et al. An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy. BMC Bioinformatics. 2013;14:297.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 297
-
-
Buggenthin, F.1
Marr, C.2
Schwarzfischer, M.3
Hoppe, P.S.4
Hilsenbeck, O.5
Schroeder, T.6
-
82
-
-
84891510370
-
Parallel geometric classification of stem cells by their 3D morphology.
-
Juba D, Cardone A, Ip CY, Simon Jr CG, Tison CK, Kumar G, et al. Parallel geometric classification of stem cells by their 3D morphology. Computational Science Discovery. 2013;6.
-
(2013)
Computational Science Discovery.
, pp. 6
-
-
Juba, D.1
Cardone, A.2
Ip, C.Y.3
Simon, Jr.C.G.4
Tison, C.K.5
Kumar, G.6
-
84
-
-
84896073709
-
A rapid and efficient 2D/3D nuclear segmentation method for analysis of early mouse embryo and stem cell image data
-
Lou X, Kang M, Xenopoulos P, Muñoz-Descalzo S, Hadjantonakis A-K. A rapid and efficient 2D/3D nuclear segmentation method for analysis of early mouse embryo and stem cell image data. Stem Cell Reports. 2014;2:382-97.
-
(2014)
Stem Cell Reports
, vol.2
, pp. 382-397
-
-
Lou, X.1
Kang, M.2
Xenopoulos, P.3
Muñoz-Descalzo, S.4
Hadjantonakis, A.-K.5
-
85
-
-
84871574173
-
Translation of a Tumor Microenvironment Mimicking 3D Tumor Growth Co-culture Assay Platform to High-Content Screening.
-
Krausz E, de Hoogt R, Gustin E, Cornelissen F, Grand-Perret T, Janssen L, et al. Translation of a Tumor Microenvironment Mimicking 3D Tumor Growth Co-culture Assay Platform to High-Content Screening. Journal of Biomolecular Screening 2012.
-
(2012)
Journal of Biomolecular Screening
-
-
Krausz, E.1
de Hoogt, R.2
Gustin, E.3
Cornelissen, F.4
Grand-Perret, T.5
Janssen, L.6
-
86
-
-
78549240782
-
Quantitative imaging reveals heterogeneous growth dynamics and treatment-dependent residual tumor distributions in a three-dimensional ovarian cancer model
-
Celli JP, Rizvi I, Evans CL, Abu-Yousif AO, Hasan T. Quantitative imaging reveals heterogeneous growth dynamics and treatment-dependent residual tumor distributions in a three-dimensional ovarian cancer model. J Biomed Opt. 2010;15:051603.
-
(2010)
J Biomed Opt
, vol.15
-
-
Celli, J.P.1
Rizvi, I.2
Evans, C.L.3
Abu-Yousif, A.O.4
Hasan, T.5
-
87
-
-
84859016779
-
Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing
-
Winter M, Wait E, Roysam B, Goderie SK, Ali RAN, Kokovay E, et al. Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing. Nat Protoc. 2011;6:1942-52.
-
(2011)
Nat Protoc
, vol.6
, pp. 1942-1952
-
-
Winter, M.1
Wait, E.2
Roysam, B.3
Goderie, S.K.4
Ali, R.A.N.5
Kokovay, E.6
-
89
-
-
80055039373
-
A Fast and Automated Framework for Extraction of Nuclei From Cluttered 3D Images in Fluorescence Microscopy.
-
Pop S, Dufour A, Le GJ, Ragni CV, Buckingham ME, Meilhac SM, et al. A Fast and Automated Framework for Extraction of Nuclei From Cluttered 3D Images in Fluorescence Microscopy. In: 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Ptr 335. 2011. p. 2113-6.
-
(2011)
In: 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Ptr
, vol.335
, pp. 2113-2116
-
-
Pop, S.1
Dufour, A.2
Le, G.J.3
Ragni, C.V.4
Buckingham, M.E.5
Meilhac, S.M.6
-
90
-
-
27844470693
-
Survey over image thresholding techniques and
-
Sezgin M, Sankur B. Survey over image thresholding techniques and. J Electronic Imaging. 2004;13:220.
-
(2004)
J Electronic Imaging
, vol.13
, pp. 220
-
-
Sezgin, M.1
Sankur, B.2
-
91
-
-
33750949950
-
Spatio-Temporal Cell Cycle Analysis Using 3D Level Set Segmentation of Unstained Nuclei in Line Scan Confocal Fluorescence Images.
-
Padfield DR, Rittscher J, Sebastian T, Thomas N, Roysam B. Spatio-Temporal Cell Cycle Analysis Using 3D Level Set Segmentation of Unstained Nuclei in Line Scan Confocal Fluorescence Images. In: 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano. 2006. p. 1036-9.
-
(2006)
In: 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano.
, pp. 1036-1039
-
-
Padfield, D.R.1
Rittscher, J.2
Sebastian, T.3
Thomas, N.4
Roysam, B.5
-
92
-
-
84991904822
-
-
MATLAB Multicore [ http://www.mathworks.com/discovery/matlab-multicore.html ].
-
-
-
-
93
-
-
84991885087
-
Methods research on future research needs: defining an optimal format for presenting research needs.
-
Trikalinos T, Dahabreh I, Lee J. Methods research on future research needs: defining an optimal format for presenting research needs. Methods Future Res Needs Report. 2011;1-43.
-
(2011)
Methods Future Res Needs Report.
, pp. 1-43
-
-
Trikalinos, T.1
Dahabreh, I.2
Lee, J.3
-
94
-
-
84991837678
-
Guide for Using Fluorescence Microscopy to Quantify the Spread Area of Fixed Cells 1.
-
ASTM International, 100 Barr Harbor Drive, PO Box C700, West Conshohocken, PA 19428-2959. United States: Designation; F2998-14
-
ASTM. Guide for Using Fluorescence Microscopy to Quantify the Spread Area of Fixed Cells 1. ASTM International, 100 Barr Harbor Drive, PO Box C700, West Conshohocken, PA 19428-2959. United States: Designation; 2014. p. F2998-14.
-
(2014)
-
-
-
95
-
-
0029057619
-
Photobleaching kinetics of fluorescein in quantitative fluorescent microscopy
-
Song L, Hennink E, Young I, Tanke H. Photobleaching kinetics of fluorescein in quantitative fluorescent microscopy. Biophys J. 1995;68:2588-600.
-
(1995)
Biophys J
, vol.68
, pp. 2588-2600
-
-
Song, L.1
Hennink, E.2
Young, I.3
Tanke, H.4
-
96
-
-
84991867571
-
-
Antibody Validation Criteria [ http://www.antibodypedia.com/text/validation_criteria ].
-
-
-
-
97
-
-
77954062372
-
Antibody validation
-
Bordeaux J, Welsh A, Agarwal S, Killiam E, Baquero M, Hanna J, et al. Antibody validation. BioTechniques. 2010;48:197-209.
-
(2010)
BioTechniques
, vol.48
, pp. 197-209
-
-
Bordeaux, J.1
Welsh, A.2
Agarwal, S.3
Killiam, E.4
Baquero, M.5
Hanna, J.6
-
98
-
-
84881304772
-
Six red flags for suspect work
-
Begley CG. Six red flags for suspect work. Nature. 2013;497:433-4.
-
(2013)
Nature
, vol.497
, pp. 433-434
-
-
Begley, C.G.1
-
99
-
-
0036178781
-
Simple method for reduction of autofluorescence in fluorescence microscopy
-
Neumann M, Gabel D. Simple method for reduction of autofluorescence in fluorescence microscopy. J Histochemistry Cytochemistry. 2002;50:437-9.
-
(2002)
J Histochemistry Cytochemistry
, vol.50
, pp. 437-439
-
-
Neumann, M.1
Gabel, D.2
-
100
-
-
0031859765
-
Autofluorescence of living cells
-
Andersson H, Baechi T, Hoechl M, Richter C. Autofluorescence of living cells. J Microsc. 1998;191(July):1-7.
-
(1998)
J Microsc
, vol.191
, Issue.JULY
, pp. 1-7
-
-
Andersson, H.1
Baechi, T.2
Hoechl, M.3
Richter, C.4
-
102
-
-
33646365074
-
Combinatorial screen of the effect of surface energy on fibronectin-mediated osteoblast adhesion, spreading and proliferation
-
Kennedy SB, Washburn NR, Simon CG, Amis EJ. Combinatorial screen of the effect of surface energy on fibronectin-mediated osteoblast adhesion, spreading and proliferation. Biomaterials. 2006;27:3817-24.
-
(2006)
Biomaterials
, vol.27
, pp. 3817-3824
-
-
Kennedy, S.B.1
Washburn, N.R.2
Simon, C.G.3
Amis, E.J.4
-
103
-
-
84892383382
-
ConfocalCheck--a software tool for the automated monitoring of confocal microscope performance
-
Hng KI, Dormann D. ConfocalCheck--a software tool for the automated monitoring of confocal microscope performance. PLoS One. 2013;8, e79879.
-
(2013)
PLoS One
, vol.8
-
-
Hng, K.I.1
Dormann, D.2
-
104
-
-
84911808525
-
An automated protocol for performance benchmarking a widefield fluorescence microscope
-
Halter M, Bier E, Derose PC, Cooksey GA, Choquette SJ, Plant AL, et al. An automated protocol for performance benchmarking a widefield fluorescence microscope, Cytometry Part A. 2014.
-
(2014)
Cytometry Part A.
-
-
Halter, M.1
Bier, E.2
Derose, P.C.3
Cooksey, G.A.4
Choquette, S.J.5
Plant, A.L.6
-
106
-
-
80955152014
-
Measuring and interpreting point spread functions to determine confocal microscope resolution and ensure quality control
-
Cole RW, Jinadasa T, Brown CM. Measuring and interpreting point spread functions to determine confocal microscope resolution and ensure quality control. Nat Protoc. 2011;6:1929-41.
-
(2011)
Nat Protoc
, vol.6
, pp. 1929-1941
-
-
Cole, R.W.1
Jinadasa, T.2
Brown, C.M.3
-
108
-
-
84874030940
-
Note: a three-dimensional calibration device for the confocal microscope
-
Jensen KE, Weitz DA, Spaepen F. Note: a three-dimensional calibration device for the confocal microscope. Rev Sci Instrum. 2013;84:016108.
-
(2013)
Rev Sci Instrum
, vol.84
-
-
Jensen, K.E.1
Weitz, D.A.2
Spaepen, F.3
-
109
-
-
0021956248
-
Digital imaging fluorescence microscopy: spatial heterogeneity of photobleaching rate constants in individual cells
-
Benson DM, Bryan J, Plant AL, Gotto AM, Smith LC. Digital imaging fluorescence microscopy: spatial heterogeneity of photobleaching rate constants in individual cells. J Cell Biol. 1985;100(April):1309-23.
-
(1985)
J Cell Biol
, vol.100
, Issue.APRIL
, pp. 1309-1323
-
-
Benson, D.M.1
Bryan, J.2
Plant, A.L.3
Gotto, A.M.4
Smith, L.C.5
-
110
-
-
0035421135
-
A standard for calibration and shading correction of a fluorescence microscope
-
Model MA, Burkhardt JK. A standard for calibration and shading correction of a fluorescence microscope. Cytometry. 2001;44:309-16.
-
(2001)
Cytometry
, vol.44
, pp. 309-316
-
-
Model, M.A.1
Burkhardt, J.K.2
-
111
-
-
26244468212
-
Shading correction: compensation for illumination and sensor inhomogeneities.
-
Wiley On-line.
-
Young IT. Shading correction: compensation for illumination and sensor inhomogeneities. In: Current Protocols in Cytometry. 2000. p. 1-14. Wiley On-line.
-
(2000)
In: Current Protocols in Cytometry.
, pp. 1-14
-
-
Young, I.T.1
-
112
-
-
4744375975
-
Image calibration in fluorescence microscopy
-
Zwier JM, Van Rooij GJ, Hofstraat JW, Brakenhoff GJ. Image calibration in fluorescence microscopy. J Microsc. 2004;216(October):15-24.
-
(2004)
J Microsc
, vol.216
, Issue.OCTOBER
, pp. 15-24
-
-
Zwier, J.M.1
Rooij, G.J.2
Hofstraat, J.W.3
Brakenhoff, G.J.4
-
113
-
-
84892646733
-
Robust detection and visualization of cytoskeletal structures in fibrillar scaffolds from 3-dimensional confocal image
-
Park DY, Jones D, Moldovan NI, Machiraju R, Pecot T. Robust detection and visualization of cytoskeletal structures in fibrillar scaffolds from 3-dimensional confocal image. IEEE Symposium on Biological Data Visualization (BioVis). 2013;2013:25-32.
-
(2013)
IEEE Symposium on Biological Data Visualization (BioVis)
, vol.2013
, pp. 25-32
-
-
Park, D.Y.1
Jones, D.2
Moldovan, N.I.3
Machiraju, R.4
Pecot, T.5
-
114
-
-
84886314384
-
To be or not to be assembled: progressing into nuclear actin filaments
-
Grosse R, Vartiainen MK. To be or not to be assembled: progressing into nuclear actin filaments. Nat Rev Mol Cell Biol. 2013;14:693-7.
-
(2013)
Nat Rev Mol Cell Biol
, vol.14
, pp. 693-697
-
-
Grosse, R.1
Vartiainen, M.K.2
-
115
-
-
23044515069
-
Feature point tracking and trajectory analysis for video imaging in cell biology
-
Sbalzarini IF, Koumoutsakos P. Feature point tracking and trajectory analysis for video imaging in cell biology. J Struct Biol. 2005;151:182-95.
-
(2005)
J Struct Biol
, vol.151
, pp. 182-195
-
-
Sbalzarini, I.F.1
Koumoutsakos, P.2
-
116
-
-
33644770578
-
Three-dimensional volume reconstruction of extracellular matrix proteins in uveal melanoma from fluorescent confocal laser scanning microscope images
-
Bajcsy P, Lee S-C, Lin A, Folberg R. Three-dimensional volume reconstruction of extracellular matrix proteins in uveal melanoma from fluorescent confocal laser scanning microscope images. J Microsc. 2006;221(Pt 1):30-45.
-
(2006)
J Microsc
, vol.221
, pp. 30-45
-
-
Bajcsy, P.1
Lee, S.-C.2
Lin, A.3
Folberg, R.4
-
117
-
-
84861683101
-
3D segmentation of keratin intermediate filaments in confocal laser scanning microscopy.
-
Boston, MA: IEEE EMBS;
-
Herberich G, Windoffer R, Leube R, Aach T. 3D segmentation of keratin intermediate filaments in confocal laser scanning microscopy. In: Annual International Conference of the IEEE Engineering in Medicine and Biology Society. Boston, MA: IEEE EMBS; 2011. p. 7751-4.
-
(2011)
In: Annual International Conference of the IEEE Engineering in Medicine and Biology Society.
, pp. 7751-7754
-
-
Herberich, G.1
Windoffer, R.2
Leube, R.3
Aach, T.4
-
118
-
-
36348963017
-
Tracking of migrating Glioma cells in feature space.
-
Bai W, Zhou X, Zhu J, Ji L, Wong STC. Tracking of migrating Glioma cells in feature space. In: 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro. IEEE. 2007. p. 272-5.
-
(2007)
In: 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro. IEEE.
, pp. 272-275
-
-
Bai, W.1
Zhou, X.2
Zhu, J.3
Ji, L.4
Wong, S.T.C.5
-
119
-
-
80055026823
-
Mitosis detection for stem cell tracking in phase-contrast microscopy images.
-
Huh S, Eom S, Bise R, Yin Z, Kanade T. Mitosis detection for stem cell tracking in phase-contrast microscopy images. In: Biomedical Imaging. Nano to Macro: 2011 IEEE International Symposium on. IEEE; 2011. p. 2121-7.
-
(2011)
In: Biomedical Imaging. Nano to Macro: 2011 IEEE International Symposium on. IEEE;
, pp. 2121-2127
-
-
Huh, S.1
Eom, S.2
Bise, R.3
Yin, Z.4
Kanade, T.5
-
120
-
-
84870950897
-
Segmenting time-lapse phase contrast images of adjacent NIH 3 T3 cells
-
Chalfoun J, Kociolek M, Dima A, Halter M, Cardone A, Peskin A, et al. Segmenting time-lapse phase contrast images of adjacent NIH 3 T3 cells. J Microsc. 2013;249:41-52.
-
(2013)
J Microsc
, vol.249
, pp. 41-52
-
-
Chalfoun, J.1
Kociolek, M.2
Dima, A.3
Halter, M.4
Cardone, A.5
Peskin, A.6
-
122
-
-
84924084001
-
FogBank: a single cell segmentation across multiple cell lines and image modalities
-
Chalfoun J, Majurski M, Dima A, Stuelten C, Peskin A. FogBank: a single cell segmentation across multiple cell lines and image modalities. BMC Bioinformatics. 2014;15:431.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 431
-
-
Chalfoun, J.1
Majurski, M.2
Dima, A.3
Stuelten, C.4
Peskin, A.5
-
123
-
-
79958844030
-
An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images
-
Indhumathi C, Cai YY, Guan YQ, Opas M. An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images. J Microsc. 2011;243:60-76.
-
(2011)
J Microsc
, vol.243
, pp. 60-76
-
-
Indhumathi, C.1
Cai, Y.Y.2
Guan, Y.Q.3
Opas, M.4
-
124
-
-
74049089035
-
Image segmentation and dynamic lineage analysis in single-cell fluorescence microscopy
-
Wang Q, Niemi J, Tan C-M, You L, West M. Image segmentation and dynamic lineage analysis in single-cell fluorescence microscopy. Cytometry Part A: the journal of the International Society for Analytical Cytology. 2010;77:101-10.
-
(2010)
Cytometry Part A: the journal of the International Society for Analytical Cytology
, vol.77
, pp. 101-110
-
-
Wang, Q.1
Niemi, J.2
Tan, C.-M.3
You, L.4
West, M.5
-
125
-
-
77949777061
-
Evolving generalized Voronoi diagrams for accurate cellular image segmentation
-
Yu W, Lee HK, Hariharan S, Bu W, Ahmed S. Evolving generalized Voronoi diagrams for accurate cellular image segmentation. Cytometry Part A: the journal of the International Society for Analytical Cytology. 2010;77:379-86.
-
(2010)
Cytometry Part A: the journal of the International Society for Analytical Cytology
, vol.77
, pp. 379-386
-
-
Yu, W.1
Lee, H.K.2
Hariharan, S.3
Bu, W.4
Ahmed, S.5
-
127
-
-
48749119799
-
Cell population tracking and lineage construction with spatiotemporal context
-
Li K, Miller ED, Chen M, Kanade T, Weiss LE, Campbell PG. Cell population tracking and lineage construction with spatiotemporal context. Med Image Anal. 2008;12:546-66.
-
(2008)
Med Image Anal
, vol.12
, pp. 546-566
-
-
Li, K.1
Miller, E.D.2
Chen, M.3
Kanade, T.4
Weiss, L.E.5
Campbell, P.G.6
-
128
-
-
84921566389
-
Background intensity correction for terabyte-sized time-lapse images
-
Chalfoun J, Majurski M, Bhadriraju K, Lund S, Bajcsy P, Brady M. Background intensity correction for terabyte-sized time-lapse images. J Microsc. 2015;257:226-38.
-
(2015)
J Microsc
, vol.257
, pp. 226-238
-
-
Chalfoun, J.1
Majurski, M.2
Bhadriraju, K.3
Lund, S.4
Bajcsy, P.5
Brady, M.6
-
129
-
-
84921538445
-
Empirical gradient threshold technique for automated segmentation across image modalities and cell lines.
-
Chalfoun J, Majurski M, Peskin A, Breen C, Bajcsy P. Empirical gradient threshold technique for automated segmentation across image modalities and cell lines. J Microsc. 2014;1-18.
-
(2014)
J Microsc.
, pp. 1-18
-
-
Chalfoun, J.1
Majurski, M.2
Peskin, A.3
Breen, C.4
Bajcsy, P.5
-
131
-
-
42149087604
-
Active Contour-Based Multiresolution Transforms for the Segmentation of Fluorescence Microscope Images.
-
In: Van De Ville D, Goyal VK, Papadakis M, editors.
-
Srinivasa G, Fickus M, Kovăević J. Active Contour-Based Multiresolution Transforms for the Segmentation of Fluorescence Microscope Images. In: Van De Ville D, Goyal VK, Papadakis M, editors. Proceedings of the SPIE. 2007. p. 6701.
-
(2007)
Proceedings of the SPIE.
, pp. 6701
-
-
Srinivasa, G.1
Fickus, M.2
Kovăević, J.3
-
132
-
-
27244448858
-
-
In: Kropatsch W, Sablating R, editors. Pattern Recognition. Berlin: Springer;
-
Fehr J, Ronneberger O, Kurz H, Burkhardt H. Self-learning Segmentation and Classification of Cell-Nuclei in 3D Volumetric Data Using Voxel-Wise Gray Scale Invariants. In: Kropatsch W, Sablating R, editors. Pattern Recognition. Berlin: Springer; 2005. p. 377-84.
-
(2005)
Self-learning Segmentation and Classification of Cell-Nuclei in 3D Volumetric Data Using Voxel-Wise Gray Scale Invariants.
, pp. 377-384
-
-
Fehr, J.1
Ronneberger, O.2
Kurz, H.3
Burkhardt, H.4
-
133
-
-
68149132428
-
Active mask segmentation of fluorescence microscope images
-
Srinivasa G, Fickus MC, Guo Y, Linstedt AD, Kovacević J. Active mask segmentation of fluorescence microscope images. IEEE Trans Image Process. 2009;18:1817-29.
-
(2009)
IEEE Trans Image Process
, vol.18
, pp. 1817-1829
-
-
Srinivasa, G.1
Fickus, M.C.2
Guo, Y.3
Linstedt, A.D.4
Kovacević, J.5
-
136
-
-
41049096731
-
Associative image analysis: a method for automated quantification of 3D multi-parameter images of brain tissue
-
Bjornsson C, Lin G, Al-Kofahi Y, Narayanaswamy A, Smith KL, Shain W, et al. Associative image analysis: a method for automated quantification of 3D multi-parameter images of brain tissue. J Neuroscience Methods Methods. 2008;170:165-78.
-
(2008)
J Neuroscience Methods Methods
, vol.170
, pp. 165-178
-
-
Bjornsson, C.1
Lin, G.2
Al-Kofahi, Y.3
Narayanaswamy, A.4
Smith, K.L.5
Shain, W.6
-
137
-
-
6944256790
-
Engineering and algorithm design for an image processing Api: a technical report on ITK--the Insight Toolkit
-
Yoo TS, Ackerman MJ, Lorensen WE, Schroeder W, Chalana V, Aylward S, et al. Engineering and algorithm design for an image processing Api: a technical report on ITK--the Insight Toolkit. Stud Health Technol Inform. 2002;85:586-92.
-
(2002)
Stud Health Technol Inform
, vol.85
, pp. 586-592
-
-
Yoo, T.S.1
Ackerman, M.J.2
Lorensen, W.E.3
Schroeder, W.4
Chalana, V.5
Aylward, S.6
-
138
-
-
44649148372
-
Reconstruction of cellular biological structures from optical microscopy data
-
Mosaliganti K, Cooper L. Reconstruction of cellular biological structures from optical microscopy data. IEEE Trans Vis Comput Graph. 2008;14:863-76.
-
(2008)
IEEE Trans Vis Comput Graph
, vol.14
, pp. 863-876
-
-
Mosaliganti, K.1
Cooper, L.2
-
139
-
-
35948953980
-
3D cell nuclei segmentation based on gradient flow tracking
-
Li G, Liu T, Tarokh A, Nie J, Guo L, Mara A, et al. 3D cell nuclei segmentation based on gradient flow tracking. BMC Cell Biol. 2007;8:40.
-
(2007)
BMC Cell Biol
, vol.8
, pp. 40
-
-
Li, G.1
Liu, T.2
Tarokh, A.3
Nie, J.4
Guo, L.5
Mara, A.6
-
140
-
-
77950679704
-
V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets
-
Peng H, Ruan Z, Long F, Simpson JH, Myers EW. V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets. Nat Biotechnol. 2010;28:348-53.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 348-353
-
-
Peng, H.1
Ruan, Z.2
Long, F.3
Simpson, J.H.4
Myers, E.W.5
-
141
-
-
84881123426
-
Cell Segm - a MATLAB toolbox for highthroughput3D cell segmentation.
-
Last time accessed: 10-12-2015.
-
Hodneland E, Kögel T, Frei DM, Gerdes H-H, Lundervold A. Cell Segm - a MATLAB toolbox for highthroughput3D cell segmentation. Source Code Biol Med., BioMed Central Ltd.; 2013;8:16. doi: 10.1186/1751-0473-8-16Last time accessed: 10-12-2015.
-
(2013)
Source Code Biol Med., BioMed Central Ltd.\
, vol.8
, pp. 16
-
-
Hodneland, E.1
Kögel, T.2
Frei, D.M.3
Gerdes, H.-H.4
Lundervold, A.5
-
142
-
-
19544372619
-
Free-D: an integrated environment for three-dimensional reconstruction from serial sections
-
Andrey P, Maurin Y. Free-D: an integrated environment for three-dimensional reconstruction from serial sections. J Neurosci Methods. 2005;145:233-44.
-
(2005)
J Neurosci Methods
, vol.145
, pp. 233-244
-
-
Andrey, P.1
Maurin, Y.2
-
143
-
-
69549097485
-
A 3D digital atlas of C. elegans and its application to single-cell analyses
-
Long F, Peng H, Liu X, Kim SK, Myers E. A 3D digital atlas of C. elegans and its application to single-cell analyses. Nat Methods. 2009;6:667-72.
-
(2009)
Nat Methods
, vol.6
, pp. 667-672
-
-
Long, F.1
Peng, H.2
Liu, X.3
Kim, S.K.4
Myers, E.5
-
144
-
-
33845792555
-
Cell Profiler: image analysis software for identifying and quantifying cell phenotypes.
-
Carpenter AE, Jones TR. Cell Profiler: image analysis software for identifying and quantifying cell phenotypes. Genome Biol. 2006;7.
-
(2006)
Genome Biol.
, pp. 7
-
-
Carpenter, A.E.1
Jones, T.R.2
-
145
-
-
77953689289
-
Fully automatic stitching and distortion correction of transmission electron microscope images
-
Kaynig V, Fischer B, Müller E, Buhmann JM. Fully automatic stitching and distortion correction of transmission electron microscope images. J Struct Biol. 2010;171:163-73.
-
(2010)
J Struct Biol
, vol.171
, pp. 163-173
-
-
Kaynig, V.1
Fischer, B.2
Müller, E.3
Buhmann, J.M.4
-
146
-
-
84879557098
-
KNIME: The Konstanz Information Miner.
-
In: Preisach C, Burkhardt H, Schmidt-Thieme L, Decker R, editors.
-
Berthold M, Cebron N, Dill F, Gabriel T, Kötter T, Meinl T, et al. KNIME: The Konstanz Information Miner. In: Preisach C, Burkhardt H, Schmidt-Thieme L, Decker R, editors. Data Analysis, Machine Learning and Applications SE - 38. Berlin Heidelberg: Springer; 2008. p. 319-26 [Studies in Classification, Data Analysis, and Knowledge Organization].
-
(2008)
Data Analysis, Machine Learning and Applications SE - 38. Berlin Heidelberg: Springer; [Studies in Classification, Data Analysis, and Knowledge Organization].
, pp. 319-326
-
-
Berthold, M.1
Cebron, N.2
Dill, F.3
Gabriel, T.4
Kötter, T.5
Meinl, T.6
-
147
-
-
84907959940
-
Visualization and correction of automated segmentation, tracking and lineaging from 5-D stem cell image sequences
-
Wait E, Winter M, Bjornsson C, Kokovay E, Wang Y, Goderie S, et al. Visualization and correction of automated segmentation, tracking and lineaging from 5-D stem cell image sequences. BMC Bioinformatics. 2014;15:328.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 328
-
-
Wait, E.1
Winter, M.2
Bjornsson, C.3
Kokovay, E.4
Wang, Y.5
Goderie, S.6
-
148
-
-
84863393849
-
OMERO: flexible, model-driven data management for experimental biology
-
Allan C, Burel J-M, Moore J, Blackburn C, Linkert M, Loynton S, et al. OMERO: flexible, model-driven data management for experimental biology. Nat Methods. 2012;9:245-53.
-
(2012)
Nat Methods
, vol.9
, pp. 245-253
-
-
Allan, C.1
Burel, J.-M.2
Moore, J.3
Blackburn, C.4
Linkert, M.5
Loynton, S.6
-
149
-
-
77957714521
-
Computer control of microscopes using μManager.
-
In: Ausubel FM, editor., Chapter 14:Unit14.20. San Diego, CA, USA: Academic Press; Jun 25, 2014 - Science.
-
Edelstein A, Amodaj N, Hoover K, Vale R, Stuurman N. Computer control of microscopes using μManager. In: Ausubel FM, editor. Current protocols in molecular biology, Chapter 14:Unit14.20. San Diego, CA, USA: Academic Press; 2010. p. 588. Jun 25, 2014 - Science.
-
(2010)
Current protocols in molecular biology
, pp. 588
-
-
Edelstein, A.1
Amodaj, N.2
Hoover, K.3
Vale, R.4
Stuurman, N.5
-
150
-
-
84855858086
-
Structural differences in the osteocyte network between the calvaria and long bone revealed by three-dimensional fluorescence morphometry, possibly reflecting distinct mechano-adaptations and sensitivities
-
Himeno-Ando A, Izumi Y, Yamaguchi A, Iimura T. Structural differences in the osteocyte network between the calvaria and long bone revealed by three-dimensional fluorescence morphometry, possibly reflecting distinct mechano-adaptations and sensitivities. Biochem Biophys Res Commun. 2012;417:765-70.
-
(2012)
Biochem Biophys Res Commun
, vol.417
, pp. 765-770
-
-
Himeno-Ando, A.1
Izumi, Y.2
Yamaguchi, A.3
Iimura, T.4
-
151
-
-
84891541235
-
A framework for automated cell tracking in phase contrast microscopic videos based on normal velocities
-
Moeller M, Burger M, Dieterich P, Schwab A. A framework for automated cell tracking in phase contrast microscopic videos based on normal velocities. J Vis Commun Image Represent. 2014;25:396-409.
-
(2014)
J Vis Commun Image Represent
, vol.25
, pp. 396-409
-
-
Moeller, M.1
Burger, M.2
Dieterich, P.3
Schwab, A.4
-
152
-
-
77956339402
-
Cell Cognition: time-resolved phenotype annotation in high-throughput live cell imaging
-
Held M, Schmitz MHA, Fischer B, Walter T, Neumann B, Olma MH, et al. Cell Cognition: time-resolved phenotype annotation in high-throughput live cell imaging. Nat Methods. 2010;7:747-54.
-
(2010)
Nat Methods
, vol.7
, pp. 747-754
-
-
Held, M.1
Schmitz, M.H.A.2
Fischer, B.3
Walter, T.4
Neumann, B.5
Olma, M.H.6
-
153
-
-
84991910536
-
-
Systems Science of Biological Dynamics (SSBD) database [ http://ssbd.qbic.riken.jp/ ].
-
-
-
-
155
-
-
84884937865
-
3D time series analysis of cell shape using Laplacian approaches
-
Du C-J, Hawkins PT, Stephens LR, Bretschneider T. 3D time series analysis of cell shape using Laplacian approaches. BMC Bioinformatics. 2013;14:(296)1-5.
-
(2013)
BMC Bioinformatics
, vol.14
, Issue.296
, pp. 1-5
-
-
Du, C.-J.1
Hawkins, P.T.2
Stephens, L.R.3
Bretschneider, T.4
-
156
-
-
67649409345
-
Segmentation of fluorescence microscopy images for quantitative analysis of cell nuclear architecture
-
Russell RA, Adams NM, Stephens DA, Batty E, Jensen K, Freemont PS. Segmentation of fluorescence microscopy images for quantitative analysis of cell nuclear architecture. Biophys J. 2009;96:3379-89.
-
(2009)
Biophys J
, vol.96
, pp. 3379-3389
-
-
Russell, R.A.1
Adams, N.M.2
Stephens, D.A.3
Batty, E.4
Jensen, K.5
Freemont, P.S.6
-
157
-
-
84883837721
-
Understanding the Optics to Aid Microscopy Image Segmentation.
-
Heidelberg: Springer;
-
Yin Z, Li K, Kanade T, Chen M. Understanding the Optics to Aid Microscopy Image Segmentation. In: Medical Image Computing and Computer-Assisted Intervention--MICCAI 2010, vol. 13. Heidelberg: Springer; 2010. p. 209-17.
-
(2010)
In: Medical Image Computing and Computer-Assisted Intervention--MICCAI 2010
, vol.13
, pp. 209-217
-
-
Yin, Z.1
Li, K.2
Kanade, T.3
Chen, M.4
-
158
-
-
84862788900
-
Understanding the phase contrast optics to restore artifact-free microscopy images for segmentation
-
Yin Z, Kanade T, Chen M. Understanding the phase contrast optics to restore artifact-free microscopy images for segmentation. Med Image Anal. 2012;16:1047-62.
-
(2012)
Med Image Anal
, vol.16
, pp. 1047-1062
-
-
Yin, Z.1
Kanade, T.2
Chen, M.3
-
159
-
-
43049176436
-
Segmentation of whole cells and cell nuclei from 3-D optical microscope images using dynamic programming
-
McCullough DP, Gudla PR, Harris BS, Collins JA, Meaburn KJ, Nakaya MA, et al. Segmentation of whole cells and cell nuclei from 3-D optical microscope images using dynamic programming. IEEE Trans Med Imaging. 2008;27:723-34.
-
(2008)
IEEE Trans Med Imaging
, vol.27
, pp. 723-734
-
-
McCullough, D.P.1
Gudla, P.R.2
Harris, B.S.3
Collins, J.A.4
Meaburn, K.J.5
Nakaya, M.A.6
-
160
-
-
3042547731
-
Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections
-
Bengtsson E. Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections. J Microsc. 2004;215(January):67-76.
-
(2004)
J Microsc
, vol.215
, Issue.JANUARY
, pp. 67-76
-
-
Bengtsson, E.1
-
162
-
-
84864147928
-
Tracking transcriptional activities with high-content epifluorescent imaging
-
Hua J, Sima C, Cypert M, Gooden GC, Shack S, Alla L, et al. Tracking transcriptional activities with high-content epifluorescent imaging. J Biomed Opt. 2012;17:046008.
-
(2012)
J Biomed Opt
, vol.17
-
-
Hua, J.1
Sima, C.2
Cypert, M.3
Gooden, G.C.4
Shack, S.5
Alla, L.6
-
163
-
-
62849127621
-
Automated tracking of migrating cells in phase-contrast video microscopy sequences using image registration
-
Hand AJ, Sun T, Barber DC, Hose DR, MacNeil S. Automated tracking of migrating cells in phase-contrast video microscopy sequences using image registration. J Microsc. 2009;234:62-79.
-
(2009)
J Microsc
, vol.234
, pp. 62-79
-
-
Hand, A.J.1
Sun, T.2
Barber, D.C.3
Hose, D.R.4
MacNeil, S.5
-
164
-
-
37549026179
-
Novel cell segmentation and online SVM for cell cycle phase identification in automated microscopy
-
Wang M, Zhou X, Li F, Huckins J, King RW, Wong STC. Novel cell segmentation and online SVM for cell cycle phase identification in automated microscopy. Bioinformatics. 2008;24:94-101.
-
(2008)
Bioinformatics
, vol.24
, pp. 94-101
-
-
Wang, M.1
Zhou, X.2
Li, F.3
Huckins, J.4
King, R.W.5
Wong, S.T.C.6
-
165
-
-
77950648883
-
Significantly improved precision of cell migration analysis in time-lapse video microscopy through use of a fully automated tracking system
-
Huth J, Buchholz M, Kraus JM, Schmucker M, von Wichert G, Krndija D, et al. Significantly improved precision of cell migration analysis in time-lapse video microscopy through use of a fully automated tracking system. BMC Cell Biol. 2010;11:24.
-
(2010)
BMC Cell Biol
, vol.11
, pp. 24
-
-
Huth, J.1
Buchholz, M.2
Kraus, J.M.3
Schmucker, M.4
Wichert, G.5
Krndija, D.6
-
166
-
-
25444448000
-
Automated measurement of cell motility and proliferation
-
Bahnson A, Athanassiou C, Koebler D, Qian L, Shun T, Shields D, et al. Automated measurement of cell motility and proliferation. BMC Cell Biol. 2005;6:19.
-
(2005)
BMC Cell Biol
, vol.6
, pp. 19
-
-
Bahnson, A.1
Athanassiou, C.2
Koebler, D.3
Qian, L.4
Shun, T.5
Shields, D.6
-
167
-
-
43749106246
-
Neuronal nuclei localization in 3D using level set and watershed segmentation from laser scanning microscopy images.
-
In: Reinhardt JM, Pluim JPW, editors. 691441-691441-8
-
Zhu Y, Olson E, Subramanian A, Feiglin D, Varshney PK, Krol A. Neuronal nuclei localization in 3D using level set and watershed segmentation from laser scanning microscopy images. In: Reinhardt JM, Pluim JPW, editors. Proc. SPIE. Volume 6914. 2008. p. 691441-691441-8.
-
(2008)
Proc. SPIE.
, vol.6914
-
-
Zhu, Y.1
Olson, E.2
Subramanian, A.3
Feiglin, D.4
Varshney, P.K.5
Krol, A.6
-
168
-
-
3042699587
-
A model-based approach for automated in vitro cell tracking and chemotaxis analyses
-
Debeir O, Camby I, Kiss R, Van Ham P, Decaestecker C. A model-based approach for automated in vitro cell tracking and chemotaxis analyses. Cytometry Part A: the journal of the International Society for Analytical Cytology. 2004;60:29-40.
-
(2004)
Cytometry Part A: the journal of the International Society for Analytical Cytology
, vol.60
, pp. 29-40
-
-
Debeir, O.1
Camby, I.2
Kiss, R.3
Ham, P.4
Decaestecker, C.5
-
169
-
-
0025388712
-
A survey of parallel computer architecture.
-
Duncan R. A survey of parallel computer architecture. Computer. 1990;5-16.
-
(1990)
Computer.
, pp. 5-16
-
-
Duncan, R.1
|