메뉴 건너뛰기




Volumn 30, Issue 11, 2014, Pages 1609-1617

A benchmark for comparison of cell tracking algorithms

(30)  Maška, Martin a,b   Ulman, Vladimír a   Svoboda, David a   Matula, Pavel a   Matula, Petr a   Ederra, Cristina b   Urbiola, Ainhoa b   España, Tomás b   Venkatesan, Subramanian c   Balak, Deepak M W c   Karas, Pavel a   Bolcková, Tereza a   Štreitová, Markéta a   Carthel, Craig d   Coraluppi, Stefano d   Harder, Nathalie e   Rohr, Karl e   Magnusson, Klas E G f   Jaldén, Joakim f   Blau, Helen M g   more..


Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CELL TRACKING; FLUORESCENCE MICROSCOPY; METHODOLOGY; QUALITY CONTROL;

EID: 84901355271     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu080     Document Type: Article
Times cited : (370)

References (31)
  • 1
    • 32244445804 scopus 로고    scopus 로고
    • Automated cell lineage construction: A rapid method to analyze clonal development established with murine neural progenitor cells
    • Al-Kofahi, O. et al. (2006) Automated cell lineage construction: A rapid method to analyze clonal development established with murine neural progenitor cells. Cell Cycle, 5, 327-335. (Pubitemid 43213505
    • (2006) Cell Cycle , vol.5 , Issue.3 , pp. 327-335
    • Al-Kofahi, O.1    Radke, R.J.2    Goderie, S.K.3    Shen, Q.4    Temple, S.5    Roysam, B.6
  • 3
    • 84863225031 scopus 로고    scopus 로고
    • A call for bioimaging software usability
    • Carpenter, A.E. et al. (2012) A call for bioimaging software usability. Nat. Methods, 7, 666-670
    • (2012) Nat. Methods , vol.7 , pp. 666-670
    • Carpenter, A.E.1
  • 4
    • 84884580799 scopus 로고    scopus 로고
    • Multiple-hypothesis tracking for cluttered biological image sequences
    • Chenouard, N. et al. (2013) Multiple-hypothesis tracking for cluttered biological image sequences. IEEE Trans. Pattern Anal. Mach. Intell., 35, 2736-3750
    • (2013) IEEE Trans Pattern Anal. Mach. Intell , vol.35 , pp. 2736-3750
    • Chenouard, N.1
  • 5
    • 79959538800 scopus 로고    scopus 로고
    • Comparison of segmentation algorithms for fluorescence microscopy images of cells
    • Dima, A.A. et al. (2011) Comparison of segmentation algorithms for fluorescence microscopy images of cells. Cytometry A, 79, 545-559
    • (2011) Cytometry A , Issue.79 , pp. 545-559
    • Dima, A.A.1
  • 6
    • 26444456033 scopus 로고    scopus 로고
    • Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces
    • Dufour, A. et al. (2005) Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces. IEEE Trans. Image Process., 14, 1396-1410
    • (2005) IEEE Trans Image Process , vol.14 , pp. 1396-1410
    • Dufour, A.1
  • 7
    • 79959616747 scopus 로고    scopus 로고
    • 3-D active meshes: Fast discrete deformable models for cell tracking in 3-D time-lapse microscopy
    • Dufour, A. et al. (2011) 3-D active meshes: Fast discrete deformable models for cell tracking in 3-D time-lapse microscopy. IEEE Trans. Image Process., 20, 1925-1937
    • (2011) IEEE Trans. Image Process , vol.20 , pp. 1925-1937
    • Dufour, A.1
  • 8
    • 77749279421 scopus 로고    scopus 로고
    • Advanced level-set-based cell tracking in time-lapse fluorescence microscopy
    • Dzyubachyk, O. et al. (2010) Advanced level-set-based cell tracking in time-lapse fluorescence microscopy. IEEE Trans. Med. Imaging, 29, 852-867
    • (2010) IEEE Trans Med. Imaging , vol.29 , pp. 852-867
    • Dzyubachyk, O.1
  • 9
    • 33748978371 scopus 로고    scopus 로고
    • Quantitative in vivo microscopy: The return from the omics
    • Fernandez-Gonzalez, R. et al. (2006) Quantitative in vivo microscopy: The return from the 'omics'. Curr. Opin. Biotechnol., 17, 501-510
    • (2006) Curr Opin. Biotechnol , vol.17 , pp. 501-510
    • Fernandez-Gonzalez, R.1
  • 10
    • 84885138103 scopus 로고    scopus 로고
    • Benchmarking HEp02 cells classification methods
    • Foggia, P. et al. (2013) Benchmarking HEp02 cells classification methods. IEEE Trans. Med. Imaging, 32, 1878-1889
    • (2013) IEEE Trans Med. Imaging , vol.32 , pp. 1878-1889
    • Foggia, P.1
  • 11
    • 81855169565 scopus 로고    scopus 로고
    • Cancer invasion and the microenvironment: Plasticity and reciprocity
    • Friedl, P. and Alexander, D. (2011) Cancer invasion and the microenvironment: Plasticity and reciprocity. Cell, 147, 992-1009
    • (2011) Cell , vol.147 , pp. 992-1009
    • Friedl, P.1    Alexander, D.2
  • 12
    • 67649528138 scopus 로고    scopus 로고
    • Collective cell migration in morphogenesis regeneration and cancer
    • Friedl, P. and Gilmour, D. (2009) Collective cell migration in morphogenesis, regeneration and cancer. Nat. Rev. Mol. Cell Biol., 10, 445-457
    • (2009) Nat. Rev. Mol. Cell Biol , vol.10 , pp. 445-457
    • Friedl, P.1    Gilmour, D.2
  • 13
    • 80054943799 scopus 로고    scopus 로고
    • Comparison of parameter-Adapted segmentation methods for fluorescence micrographs
    • Held, C. et al. (2011) Comparison of parameter-Adapted segmentation methods for fluorescence micrographs. Cytometry A, 79, 933-945
    • (2011) Cytometry A , Issue.79 , pp. 933-945
    • Held, C.1
  • 14
    • 79958844030 scopus 로고    scopus 로고
    • An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images
    • Indhumathi, C. et al. (2011) An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images. J. Microsc., 243, 60-76
    • (2011) J. Microsc , vol.243 , pp. 60-76
    • Indhumathi, C.1
  • 15
    • 80054700047 scopus 로고    scopus 로고
    • Automated and semi-Automated tracking: Addressing portability challenges
    • Kan, A. et al. (2011) Automated and semi-Automated tracking: Addressing portability challenges. J. Microsc., 244, 194-213
    • (2011) J. Microsc , vol.244 , pp. 194-213
    • Kan, A.1
  • 16
    • 78649717029 scopus 로고    scopus 로고
    • Measurement of mechanical tractions exerted by cells in three-dimensional matrices
    • Legant, W.R. et al. (2010) Measurement of mechanical tractions exerted by cells in three-dimensional matrices. Nat. Methods, 7, 969-971
    • (2010) Nat. Methods , vol.7 , pp. 969-971
    • Legant, W.R.1
  • 17
    • 48749119799 scopus 로고    scopus 로고
    • Cell population tracking and lineage construction with spatiotemporal context
    • Li, K. et al. (2008) Cell population tracking and lineage construction with spatiotemporal context. Med. Image Anal., 12, 546-566
    • (2008) Med. Image Anal , vol.12 , pp. 546-566
    • Li, K.1
  • 18
    • 73849143622 scopus 로고    scopus 로고
    • Multiple nuclei tracking using integer programming for quantitative cancer cell cycle analysis
    • Li, F. et al. (2010) Multiple nuclei tracking using integer programming for quantitative cancer cell cycle analysis. IEEE Trans. Med. Imaging, 29, 96-105
    • (2010) IEEE Trans Med. Imaging , vol.29 , pp. 96-105
    • Li, F.1
  • 19
    • 13244256957 scopus 로고    scopus 로고
    • Hierarchical, model-based merging of multiple fragments for improved three-dimensional segmentation of nuclei
    • DOI 10.1002/cyto.a.20099
    • Lin, G. et al. (2005) Hierarchical, model-based merging of multiple fragments for improved three-dimensional segmentation of nuclei. Cytometry A, 63, 20-33. (Pubitemid 40194276
    • (2005) Cytometry Part A , vol.63 , Issue.1 , pp. 20-33
    • Lin, G.1    Chawla, M.K.2    Olson, K.3    Guzowski, J.F.4    Barnes, C.A.5    Roysam, B.6
  • 22
    • 84878576003 scopus 로고    scopus 로고
    • Segmentation and shape tracking of whole fluorescent cells based on the Chan-Vese model
    • Maška, M. et al. (2013) Segmentation and shape tracking of whole fluorescent cells based on the Chan-Vese model. IEEE Trans. Med. Imaging, 32, 995-1006
    • (2013) IEEE Trans. Med. Imaging , vol.32 , pp. 995-1006
    • Maška, M.1
  • 23
    • 70449084866 scopus 로고    scopus 로고
    • Tracking in cell and developmental biology
    • Meijering, E. et al. (2009) Tracking in cell and developmental biology. Semin. Cell Dev. Biol., 20, 894-902
    • (2009) Semin. Cell Dev. Biol , vol.20 , pp. 894-902
    • Meijering, E.1
  • 24
    • 0032966937 scopus 로고    scopus 로고
    • Segmentation of confocal microscope images of cell nuclei in thick tissue sections
    • Ortiz-de-Solorzano, C. et al. (1999) Segmentation of confocal microscope images of cell nuclei in thick tissue sections. J. Microsc., 193, 212-226
    • (1999) J. Microsc , vol.193 , pp. 212-226
    • Ortiz-De-Solorzano, C.1
  • 25
    • 79958772269 scopus 로고    scopus 로고
    • Coupled minimum-cost flow cell tracking for high-throughput quantitative analysis
    • Padfield, D. et al. (2011) Coupled minimum-cost flow cell tracking for high-throughput quantitative analysis. Med. Image Anal., 15, 650-668
    • (2011) Med. Image Anal , vol.15 , pp. 650-668
    • Padfield, D.1
  • 26
    • 80555154346 scopus 로고    scopus 로고
    • A novel validation algorithm allows for automated cell tracking and the extraction of biologically meaningful parameters
    • Rapoport, D.H. et al. (2011) A novel validation algorithm allows for automated cell tracking and the extraction of biologically meaningful parameters. PLoS One, 11, e27315
    • (2011) PLoS One , vol.11
    • Rapoport, D.H.1
  • 27
    • 77956278407 scopus 로고    scopus 로고
    • Tracking and quantitative analysis of dynamic movements of cells and particles
    • Rohr, K. et al. (2010) Tracking and quantitative analysis of dynamic movements of cells and particles. Cold Spring Harb. Protoc., 6, pdb.top80
    • (2010) Cold Spring Harb. Protoc 6, pdb.top80
    • Rohr, K.1
  • 28
    • 66449130653 scopus 로고    scopus 로고
    • Generation of digital phantoms of cell nuclei and simulation of image formation in 3D image cytometry
    • Svoboda, D. et al. (2009) Generation of digital phantoms of cell nuclei and simulation of image formation in 3D image cytometry. Cytometry A, 75, 494-509
    • (2009) Cytometry A , vol.75 , pp. 494-509
    • Svoboda, D.1
  • 30
    • 0036826342 scopus 로고    scopus 로고
    • Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: A tool for cell-based drug testing
    • Zimmer, C. et al. (2002) Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: A tool for cell-based drug testing. IEEE Trans. Med. Imaging., 21, 1212-1221
    • (2002) IEEE Trans Med. Imaging , vol.21 , pp. 1212-1221
    • Zimmer, C.1
  • 31
    • 85032751072 scopus 로고    scopus 로고
    • On the digital trail of mobile cells
    • Zimmer, C. et al. (2006) On the digital trail of mobile cells. IEEE Signal Process. Mag., 23, 54-62
    • (2006) IEEE Signal Process Mag , vol.23 , pp. 54-62
    • Zimmer, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.