-
1
-
-
71549120700
-
Comparison of molecular markers to detect fresh sewage in environmental waters
-
Ahmed, W., A. Goonetilleke, D. Powell, K. Chauhan, and T. Gardner. 2009. Comparison of molecular markers to detect fresh sewage in environmental waters. Water Res. 43:4908-4917. doi:10.1016/j.watres.2009.09.047
-
(2009)
Water Res.
, vol.43
, pp. 4908-4917
-
-
Ahmed, W.1
Goonetilleke, A.2
Powell, D.3
Chauhan, K.4
Gardner, T.5
-
2
-
-
50949123270
-
Real-time PCR detection of pathogenic microorganisms in roof-harvested rainwater in Southeast Queensland, Australia
-
Ahmed, W., F. Huygens, A. Goonetilleke, and T. Gardner. 2008b. Real-time PCR detection of pathogenic microorganisms in roof-harvested rainwater in Southeast Queensland, Australia. Appl. Environ. Microbiol. 74:5490- 5496. doi:10.1128/AEM.00331-08
-
(2008)
Appl. Environ. Microbiol
, vol.74
, pp. 5490-5496
-
-
Ahmed, W.1
Huygens, F.2
Goonetilleke, A.3
Gardner, T.4
-
3
-
-
38349138542
-
Evaluation of Bacteroides markers for the detection of human faecal pollution
-
Ahmed, W., J. Stewart, D. Powell, and T. Gardner. 2008a. Evaluation of Bacteroides markers for the detection of human faecal pollution. Water Res. 46:237-242. doi:10.1111/j.1472-765X.2007.02287.x
-
(2008)
Water Res
, vol.46
, pp. 237-242
-
-
Ahmed, W.1
Stewart, J.2
Powell, D.3
Gardner, T.4
-
4
-
-
79953287066
-
Quantifying environmental reservoirs of fecal indicator bacteria associated with sediment and submerged aquatic vegetation
-
Badgley, B.D., F.I. Thomas, and V.J. Harwood. 2011. Quantifying environmental reservoirs of fecal indicator bacteria associated with sediment and submerged aquatic vegetation. Environ. Microbiol. 13:932-942. doi:10.1111/j.1462-2920.2010.02397.x
-
(2011)
Environ. Microbiol.
, vol.13
, pp. 932-942
-
-
Badgley, B.D.1
Thomas, F.I.2
Harwood, V.J.3
-
5
-
-
70349114573
-
Rapid identification and differentiation of agricultural faecal contamination sources using multiplex PCR
-
Baker-Austin, C., J. Morris, J.A. Lowther, R. Rangdale, and D.N. Lees. 2009. Rapid identification and differentiation of agricultural faecal contamination sources using multiplex PCR. Lett. Appl. Microbiol. 49:529-532. doi:10.1111/j.1472-765X.2009.02679.x
-
(2009)
Lett. Appl. Microbiol.
, vol.49
, pp. 529-532
-
-
Baker-Austin, C.1
Morris, J.2
Lowther, J.A.3
Rangdale, R.4
Lees, D.N.5
-
6
-
-
77950354178
-
Application of mitochondrial DNA analysis for microbial source tracking purposes in shellfish harvesting waters
-
Baker-Austin, C., R. Rangdale, J. Lowther, and D.N. Lees. 2010. Application of mitochondrial DNA analysis for microbial source tracking purposes in shellfish harvesting waters. Water Sci. Technol. 61:1-7. doi:10.2166/ wst.2010.767
-
(2010)
Water Sci. Technol.
, vol.61
, pp. 1-7
-
-
Baker-Austin, C.1
Rangdale, R.2
Lowther, J.3
Lees, D.N.4
-
7
-
-
71849093891
-
-
World Health Organization, Geneva.
-
Bartram, J., L. Corrales, A. Davison, D. Deere, D. Drury, B. Gordon, G. Howard, A. Rinehold, and M. Stevens. 2009. Water safety plan manual: Step-bystep risk management for drinking water suppliers. World Health Organization, Geneva.
-
(2009)
Water safety plan manual: Step-bystep risk management for drinking water suppliers
-
-
Bartram, J.1
Corrales, L.2
Davison, A.3
Deere, D.4
Drury, D.5
Gordon, B.6
Howard, G.7
Rinehold, A.8
Stevens, M.9
-
8
-
-
0034126848
-
Identification of nonpoint sources of fecal pollution in coastal waters by using host-associated 16S ribosomal DNA genetic markers from fecal anaerobes
-
Bernhard, A.E., and K.G. Field. 2000a. Identification of nonpoint sources of fecal pollution in coastal waters by using host-associated 16S ribosomal DNA genetic markers from fecal anaerobes. Appl. Environ. Microbiol. 66:1587-1594. doi:10.1128/AEM.66.4.1587-1594.2000
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 1587-1594
-
-
Bernhard, A.E.1
Field, K.G.2
-
9
-
-
0033774937
-
A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
-
Bernhard, A.E., and K.G. Field. 2000b. A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Appl. Environ. Microbiol. 66:4571-4574. doi:10.1128/AEM.66.10.4571-4574.2000
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 4571-4574
-
-
Bernhard, A.E.1
Field, K.G.2
-
10
-
-
0031936736
-
Phylogenetic analysis of Escherichia coli strains causing neonatal meningitis suggests horizontal gene transfer from a predominant pool of highly virulent B2 group strains
-
Bingen, E., B. Picard, N. Brahimi, S. Mathy, P. Desjardins, J. Elion, and E. Denamur. 1998. Phylogenetic analysis of Escherichia coli strains causing neonatal meningitis suggests horizontal gene transfer from a predominant pool of highly virulent B2 group strains. J. Infect. Dis. 177:642-650. doi:10.1086/514217
-
(1998)
J. Infect. Dis.
, vol.177
, pp. 642-650
-
-
Bingen, E.1
Picard, B.2
Brahimi, N.3
Mathy, S.4
Desjardins, P.5
Elion, J.6
Denamur, E.7
-
11
-
-
84887203418
-
Performance of forty-one microbial source tracking methods: A twenty-seven lab evaluation study
-
Boehm, A.B., L.C. Van De Werfhorst, J.F. Griffith, P.A. Holden, J.A. Jay, O.C. Shanks, D. Wang, and S.B. Weisberg. 2013. Performance of forty-one microbial source tracking methods: A twenty-seven lab evaluation study. Water Res. 47:6812-6828. doi:10.1016/j.watres.2012.12.046
-
(2013)
Water Res.
, vol.47
, pp. 6812-6828
-
-
Boehm, A.B.1
Van De Werfhorst, L.C.2
Griffith, J.F.3
Holden, P.A.4
Jay, J.A.5
Shanks, O.C.6
Wang, D.7
Weisberg, S.B.8
-
12
-
-
29144499961
-
Detection of genetic markers of fecal indicator bacteria in Lake Michigan and determination of their relationship to Escherichia coli densities using standard microbiological methods
-
Bower, P.A., C.O. Scopel, E.T. Jensen, M.M. Depas, and S.L. McLellan. 2005. Detection of genetic markers of fecal indicator bacteria in Lake Michigan and determination of their relationship to Escherichia coli densities using standard microbiological methods. Appl. Environ. Microbiol. 71:8305- 8313. doi:10.1128/AEM.71.12.8305-8313.2005
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8305- 8313
-
-
Bower, P.A.1
Scopel, C.O.2
Jensen, E.T.3
Depas, M.M.4
McLellan, S.L.5
-
13
-
-
84861571695
-
Mitochondrial DNA are source tracking markers of fecal contamination
-
C. Hagedorn, et al., editors, Springer Science Business Media, New York.
-
Caldwell, J.M., P. Payment, and R. Villemur. 2011. Mitochondrial DNA are source tracking markers of fecal contamination. In: C. Hagedorn, et al., editors, Microbial source tracking: Methods, applications, 229 and case studies. Springer Science Business Media, New York. doi:10.1007/978-1-4419-9386-1_10.
-
(2011)
Microbial source tracking: Methods, applications, 229 and case studies
-
-
Caldwell, J.M.1
Payment, P.2
Villemur, R.3
-
14
-
-
34248228283
-
Mitochondrial multiplex realtime PCR as a source tracking method in fecal-contaminated effluents
-
Caldwell, J.M., M.E. Raley, and J.F. Levine. 2007. Mitochondrial multiplex realtime PCR as a source tracking method in fecal-contaminated effluents. Environ. Sci. Technol. 41:3277-3283. doi:10.1021/es062912s
-
(2007)
Environ. Sci. Technol.
, vol.41
, pp. 3277-3283
-
-
Caldwell, J.M.1
Raley, M.E.2
Levine, J.F.3
-
15
-
-
77952795486
-
Escherichia coli phylogenetic group determination and its application in the identification of the major animal source of fecal contamination
-
Carlos, C., M.M. Pires, N.C. Stoppe, E.M. Hachich, M.Z. Sato, T.T. Gomes, and L.M. Ottoboni. 2010. Escherichia coli phylogenetic group determination and its application in the identification of the major animal source of fecal contamination. BMC Microbiol. 10:161. doi:10.1186/1471-2180-10-161
-
(2010)
BMC Microbiol.
, vol.10
, pp. 161
-
-
Carlos, C.1
Pires, M.M.2
Stoppe, N.C.3
Hachich, E.M.4
Sato, M.Z.5
Gomes, T.T.6
Ottoboni, L.M.7
-
16
-
-
57449120460
-
Rapid detection of Salmonella in foods using real-time PCR
-
Cheng, C.M., W. Lin, K.T. Van, L. Phan, N.N. Tran, and D. Farmer. 2008. Rapid detection of Salmonella in foods using real-time PCR. J. Food Prot. 71:2436-2441.
-
(2008)
J. Food Prot.
, vol.71
, pp. 2436-2441
-
-
Cheng, C.M.1
Lin, W.2
Van, K.T.3
Phan, L.4
Tran, N.N.5
Farmer, D.6
-
17
-
-
0033775633
-
Rapid and simple determination of the Escherichia coli phylogenetic group
-
Clermont, O., S. Bonacorsi, E. Bingen, and P. Bonacorsi. 2000. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl. Environ. Microbiol. 66:4555-4558. doi:10.1128/AEM.66.10.4555-4558.2000
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4555-4558
-
-
Clermont, O.1
Bonacorsi, S.2
Bingen, E.3
Bonacorsi, P.4
-
18
-
-
84873324306
-
The Clermont Escherichia coli phylo-typing method revisited: Improvement of specificity and detection of new phylo-groups
-
Clermont, O., J.K. Christenson, E. Denamur, and D.M. Gordon. 2013. The Clermont Escherichia coli phylo-typing method revisited: Improvement of specificity and detection of new phylo-groups. Environ. Microbiol. Rep. 5:58-65. doi:10.1111/1758-2229.12019
-
(2013)
Environ. Microbiol. Rep.
, vol.5
, pp. 58-65
-
-
Clermont, O.1
Christenson, J.K.2
Denamur, E.3
Gordon, D.M.4
-
19
-
-
84898027958
-
Prevalence of Shiga toxin producing Escherichia coli, Salmonella enterica and Listeria monocytogenes at public access watershed sites in a California central coast agricultural region
-
Cooley, M.B., B. Quinones, D. Oryang, R.E. Mandrell, and L. Gorski. 2014. Prevalence of Shiga toxin producing Escherichia coli, Salmonella enterica and Listeria monocytogenes at public access watershed sites in a California central coast agricultural region. Front. Cell. Infect. Microbiol. 4:30. doi:10.3389/fcimb.2014.00030
-
(2014)
Front. Cell. Infect. Microbiol.
, vol.4
, pp. 30
-
-
Cooley, M.B.1
Quinones, B.2
Oryang, D.3
Mandrell, R.E.4
Gorski, L.5
-
20
-
-
84879017459
-
Evaluating the occurrence of host-associated, general fecal indicators, and bacterial pathogens in a mixed-use watershed
-
Drozd, M., N.N. Merrick, Y.M. Sanad, L.K. Dick, W.A. Dick, and G. Rajashekara. 2013. Evaluating the occurrence of host-associated, general fecal indicators, and bacterial pathogens in a mixed-use watershed. J. Environ. Qual. 42:713-725. doi:10.2134/jeq2012.0359
-
(2013)
J. Environ. Qual.
, vol.42
, pp. 713-725
-
-
Drozd, M.1
Merrick, N.N.2
Sanad, Y.M.3
Dick, L.K.4
Dick, W.A.5
Rajashekara, G.6
-
21
-
-
34547531503
-
Fecal source tracking, the indicator paradigm, and managing water quality
-
Field, K.G., and M. Samadpour. 2007. Fecal source tracking, the indicator paradigm, and managing water quality. Water Res. 41:3517-3538. doi:10.1016/j.watres.2007.06.056
-
(2007)
Water Res.
, vol.41
, pp. 3517-3538
-
-
Field, K.G.1
Samadpour, M.2
-
22
-
-
0021934090
-
Survival and detection of Bacteroides spp., prospective indicator bacteria
-
Fiksdal, L., J.S. Maki, S.J. LaCroix, and J.T. Staley. 1985. Survival and detection of Bacteroides spp., prospective indicator bacteria. Appl. Environ. Microbiol. 49:148-150.
-
(1985)
Appl. Environ. Microbiol.
, vol.49
, pp. 148-150
-
-
Fiksdal, L.1
Maki, J.S.2
LaCroix, S.J.3
Staley, J.T.4
-
23
-
-
71549165471
-
Evaluation of host-associated Bacteroidales 16S rRNA gene markers as a complementary tool for detecting fecal pollution in a prairie watershed
-
Fremaux, B., J. Gritzfeld, T. Boa, and C.K. Yost. 2009. Evaluation of host-associated Bacteroidales 16S rRNA gene markers as a complementary tool for detecting fecal pollution in a prairie watershed. Water Res. 43:4838-4849. doi:10.1016/j.watres.2009.06.045
-
(2009)
Water Res.
, vol.43
, pp. 4838-4849
-
-
Fremaux, B.1
Gritzfeld, J.2
Boa, T.3
Yost, C.K.4
-
24
-
-
34547599998
-
Validation of host-specific Bacteriodales 16S rRNA genes as markers to determine the origin of faecal pollution in Atlantic Rim countries of the European Union
-
Gawler, A.H., J.E. Beecher, J. Brandao, N.M. Carroll, L. Falcao, M. Gourmelon, B. Masterson, B. Nunes, J. Porter, A. Rince, R. Rodrigues, M. Thorp, J.M. Walters, and W.G. Meijer. 2007. Validation of host-specific Bacteriodales 16S rRNA genes as markers to determine the origin of faecal pollution in Atlantic Rim countries of the European Union. Water Res. 41:3780-3784. doi:10.1016/j.watres.2007.01.028
-
(2007)
Water Res.
, vol.41
, pp. 3780-3784
-
-
Gawler, A.H.1
Beecher, J.E.2
Brandao, J.3
Carroll, N.M.4
Falcao, L.5
Gourmelon, M.6
Masterson, B.7
Nunes, B.8
Porter, J.9
Rince, A.10
Rodrigues, R.11
Thorp, M.12
Walters, J.M.13
Meijer, W.G.14
-
25
-
-
84944336869
-
Halifax Stanfield International Airport, Nova Scotia
-
Canadian Climate Normals, 1971-2000 Station Data. (accessed 5 May 2015).
-
Government of Canada. 2014. Halifax Stanfield International Airport, Nova Scotia. Canadian Climate Normals, 1971-2000 Station Data. http://climate.weather.gc.ca/climate_normals/ (accessed 5 May 2015).
-
(2014)
-
-
-
26
-
-
71549123211
-
Evaluation of rapid methods and novel indicators for assessing microbiological beach water quality
-
Griffith, J.F., Y.P. Cao, C.D. McGee, and S.B. Weisberg. 2009. Evaluation of rapid methods and novel indicators for assessing microbiological beach water quality. Water Res. 43:4900-4907. doi:10.1016/j.watres.2009.09.017
-
(2009)
Water Res.
, vol.43
, pp. 4900-4907
-
-
Griffith, J.F.1
Cao, Y.P.2
McGee, C.D.3
Weisberg, S.B.4
-
27
-
-
84891630221
-
Microbial source tracking markers for detection of fecal contamination in environmental waters: Relationships between pathogens and human health outcomes
-
Harwood, V.J., C. Staley, B.D. Badgley, K. Borges, and A. Korajkic. 2014. Microbial source tracking markers for detection of fecal contamination in environmental waters: Relationships between pathogens and human health outcomes. FEMS Microbiol. Rev. 38:1-40. doi:10.1111/1574-6976.12031
-
(2014)
FEMS Microbiol. Rev.
, vol.38
, pp. 1-40
-
-
Harwood, V.J.1
Staley, C.2
Badgley, B.D.3
Borges, K.4
Korajkic, A.5
-
28
-
-
84927758733
-
Guidelines for Canadian drinking water quality
-
Summary table. Ottawa, ON, Canada. (accessed 12 May 2015).
-
Health Canada. 2014. Guidelines for Canadian drinking water quality. Summary table. Ottawa, ON, Canada. http://www.hc-sc.gc.ca/ewh-semt/ pubs/water-eau/sum_guide-res_recom/index-eng.php (accessed 12 May 2015).
-
(2014)
-
-
-
29
-
-
0036794792
-
Multiplex fluorogenic real-time PCR for detection and quantification of Escherichia coli O157:H7 in dairy wastewater wetlands
-
Ibekwe, A.M., P.M. Watt, C.M. Grieve, V.K. Sharma, and S.R. Lyons. 2002. Multiplex fluorogenic real-time PCR for detection and quantification of Escherichia coli O157:H7 in dairy wastewater wetlands. Appl. Environ. Microbiol. 68:4853-4862. doi:10.1128/AEM.68.10.4853-4862.2002
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4853-4862
-
-
Ibekwe, A.M.1
Watt, P.M.2
Grieve, C.M.3
Sharma, V.K.4
Lyons, S.R.5
-
30
-
-
33644853450
-
Presence and growth of naturalized Escherichia coli in temperate soils from Lake Superior watersheds
-
Ishii, S., W.B. Ksoll, R.E. Hicks, and M.J. Sadowsky. 2006. Presence and growth of naturalized Escherichia coli in temperate soils from Lake Superior watersheds. Appl. Environ. Microbiol. 72:612-621. doi:10.1128/ AEM.72.1.612-621.2006
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 612-621
-
-
Ishii, S.1
Ksoll, W.B.2
Hicks, R.E.3
Sadowsky, M.J.4
-
31
-
-
77953111865
-
The occurrence and sources of Campylobacter spp., Salmonella enterica and Escherichia coli O157:H7 in the Salmon River, British Columbia, Canada
-
Jokinen, C.C., H. Schreier, W. Mauro, E. Taboada, J.L. Isaac-Renton, E. Topp, T. Edge, J.E. Thomas, and V.P.J. Gannon. 2010. The occurrence and sources of Campylobacter spp., Salmonella enterica and Escherichia coli O157:H7 in the Salmon River, British Columbia, Canada. J. Water Health 8:374-386. doi:10.2166/wh.2009.076
-
(2010)
J. Water Health
, vol.8
, pp. 374-386
-
-
Jokinen, C.C.1
Schreier, H.2
Mauro, W.3
Taboada, E.4
Isaac-Renton, J.L.5
Topp, E.6
Edge, T.7
Thomas, J.E.8
Gannon, V.P.J.9
-
32
-
-
84884220635
-
Correlative assessment of fecal indicators using human mitochondrial DNA as a direct marker
-
Kapoor, V., C. Smith, J.W. Santo Domingo, T. Lu, and D. Wendell. 2013. Correlative assessment of fecal indicators using human mitochondrial DNA as a direct marker. Environ. Sci. Technol. 47:10485-10493. doi:10.1021/es4020458
-
(2013)
Environ. Sci. Technol.
, vol.47
, pp. 10485-10493
-
-
Kapoor, V.1
Smith, C.2
Santo Domingo, J.W.3
Lu, T.4
Wendell, D.5
-
33
-
-
36549024988
-
Development of a novel triplex PCR assay for the detection and differentiation of thermophilic species of Campylobacter using 16S-23S rDNA internal transcribed spacer (ITS) region
-
Khan, I.U.H., and T.A. Edge. 2007. Development of a novel triplex PCR assay for the detection and differentiation of thermophilic species of Campylobacter using 16S-23S rDNA internal transcribed spacer (ITS) region. J. Appl. Microbiol. 103:2561-2569. doi:10.1111/j.1365-2672.2007.03511.x
-
(2007)
J. Appl. Microbiol.
, vol.103
, pp. 2561-2569
-
-
Khan, I.U.H.1
Edge, T.A.2
-
34
-
-
84902255313
-
A national investigation of the prevalence and diversity of thermophilic Campylobacter species in agricultural watersheds in Canada
-
Khan, I.U.H., V. Gannon, C.C. Jokinen, R. Kent, W. Koning, D.R. Lapen, D. Medeiros, J. Miller, N.F. Neumann, R. Phillips, H. Schreier, E. Topp, E. van Bochove, G. Wilkes, and T.A. Edge. 2014. A national investigation of the prevalence and diversity of thermophilic Campylobacter species in agricultural watersheds in Canada. Water Res. 61:243-252. doi:10.1016/j.watres.2014.05.027
-
(2014)
Water Res.
, vol.61
, pp. 243-252
-
-
Khan, I.U.H.1
Gannon, V.2
Jokinen, C.C.3
Kent, R.4
Koning, W.5
Lapen, D.R.6
Medeiros, D.7
Miller, J.8
Neumann, N.F.9
Phillips, R.10
Schreier, H.11
Topp, E.12
van Bochove, E.13
Wilkes, G.14
Edge, T.A.15
-
35
-
-
34547597968
-
16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: A Bayesian approach
-
Kildare, B.J., C.M. Leutenegger, B.S. McSwain, D.G. Bambic, V.B. Rajal, and S. Wuertz. 2007. 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: A Bayesian approach. Water Res. 41:3701-3715. doi:10.1016/j.watres.2007.06.037
-
(2007)
Water Res.
, vol.41
, pp. 3701-3715
-
-
Kildare, B.J.1
Leutenegger, C.M.2
McSwain, B.S.3
Bambic, D.G.4
Rajal, V.B.5
Wuertz, S.6
-
36
-
-
63449089622
-
Universal mitochondrial PCR combined with species-specific dot-blot assay as a source-tracking method of human, bovine, chicken, ovine, and porcine in fecal-contaminated surface water
-
Kortbaoui, R., A. Locas, M. Imbeau, P. Payment, and R. Villemur. 2010. Universal mitochondrial PCR combined with species-specific dot-blot assay as a source-tracking method of human, bovine, chicken, ovine, and porcine in fecal-contaminated surface water. Water Res. 43:2002-2010. doi:10.1016/j.watres.2009.01.030
-
(2010)
Water Res.
, vol.43
, pp. 2002-2010
-
-
Kortbaoui, R.1
Locas, A.2
Imbeau, M.3
Payment, P.4
Villemur, R.5
-
37
-
-
33745153077
-
Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water
-
Layton, A., L. McKay, D. Williams, V. Garrett, R. Gentry, and G. Sayler. 2006. Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water. Appl. Environ. Microbiol. 72:4214-4224. doi:10.1128/AEM.01036-05
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 4214-4224
-
-
Layton, A.1
McKay, L.2
Williams, D.3
Garrett, V.4
Gentry, R.5
Sayler, G.6
-
38
-
-
8644265908
-
Detection of Campylobacter spp. in chicken fecal samples by real-time qPCR
-
Lund, M., S. Nordentoft, K. Pedersen, and M. Madsen. 2004. Detection of Campylobacter spp. in chicken fecal samples by real-time qPCR. J. Clin. Microbiol. 42:5125-5132. doi:10.1128/JCM.42.11.5125-5132.2004
-
(2004)
J. Clin. Microbiol.
, vol.42
, pp. 5125-5132
-
-
Lund, M.1
Nordentoft, S.2
Pedersen, K.3
Madsen, M.4
-
39
-
-
84866181152
-
Association of fecal indicator bacteria with human viruses and microbial source tracking markers at coastal beaches impacted by nonpoint source pollution
-
McQuaig, S., J. Griffith, and V.J. Harwood. 2012. Association of fecal indicator bacteria with human viruses and microbial source tracking markers at coastal beaches impacted by nonpoint source pollution. Appl. Environ. Microbiol. 78:6423-6432. doi:10.1128/AEM.00024-12
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 6423-6432
-
-
McQuaig, S.1
Griffith, J.2
Harwood, V.J.3
-
40
-
-
66249125965
-
Estimation of pig fecal contamination in a river catchment by real-time PCR using two pigspecific Bacteroidales 16S rRNA genetic markers
-
Mieszkin, S., J.P. Furet, C. Gérard, and M. Gourmelon. 2009. Estimation of pig fecal contamination in a river catchment by real-time PCR using two pigspecific Bacteroidales 16S rRNA genetic markers. Appl. Environ. Microbiol. 75:3045-3054. doi:10.1128/AEM.02343-08
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 3045-3054
-
-
Mieszkin, S.1
Furet, J.P.2
Gérard, C.3
Gourmelon, M.4
-
41
-
-
79959867131
-
Combining land use information and small stream sampling with PCR-based methods for better characterization of diffuse sources of human fecal pollution
-
Peed, L.A., C.T. Nietch, C.A. Kelty, M. Meckes, T. Mooney, M. Sivaganesan, and O.C. Shanks. 2011. Combining land use information and small stream sampling with PCR-based methods for better characterization of diffuse sources of human fecal pollution. Environ. Sci. Technol. 45:5652-5659. doi:10.1021/es2003167
-
(2011)
Environ. Sci. Technol.
, vol.45
, pp. 5652-5659
-
-
Peed, L.A.1
Nietch, C.T.2
Kelty, C.A.3
Meckes, M.4
Mooney, T.5
Sivaganesan, M.6
Shanks, O.C.7
-
42
-
-
84907587452
-
Reach specificity in sediment E. coli population turnover and interaction with waterborne populations
-
Piorkowski, G., R. Jamieson, G. Bezanson, L. Truelstrup Hansen, and C. Yost. 2014. Reach specificity in sediment E. coli population turnover and interaction with waterborne populations. Sci. Total Environ. 496:402-413. doi:10.1016/j.scitotenv.2014.06.145
-
(2014)
Sci. Total Environ.
, vol.496
, pp. 402-413
-
-
Piorkowski, G.1
Jamieson, R.2
Bezanson, G.3
Truelstrup Hansen, L.4
Yost, C.5
-
43
-
-
33947640155
-
A quantitative real-time PCR assay for the highly sensitive and specific detection of human faecal influence in spring water from a large alpine catchment area
-
Reischer, G.H., D.C. Kasper, R. Steinborn, A.H. Farnleitner, and R.L. Mach. 2007. A quantitative real-time PCR assay for the highly sensitive and specific detection of human faecal influence in spring water from a large alpine catchment area. Lett. Appl. Microbiol. 44:351-356. doi:10.1111/j.1472-765X.2006.02094.x
-
(2007)
Lett. Appl. Microbiol.
, vol.44
, pp. 351-356
-
-
Reischer, G.H.1
Kasper, D.C.2
Steinborn, R.3
Farnleitner, A.H.4
Mach, R.L.5
-
44
-
-
33747329331
-
Quantitative PCR method for sensitive detection of ruminant fecal pollution in freshwater and evaluation of this method in alpine karstic regions
-
Reischer, G.H., D.C. Kasper, R. Steinborn, R.L. Mach, and A.H. Farnleitner. 2006. Quantitative PCR method for sensitive detection of ruminant fecal pollution in freshwater and evaluation of this method in alpine karstic regions. Appl. Environ. Microbiol. 72:5610-5614. doi:10.1128/ AEM.00364-06
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5610-5614
-
-
Reischer, G.H.1
Kasper, D.C.2
Steinborn, R.3
Mach, R.L.4
Farnleitner, A.H.5
-
45
-
-
84901227897
-
Baseline and storm event monitoring of Bacteroidales marker concentrations and enteric pathogen presence in a rural Canadian watershed
-
Ridley, C., R.C. Jamieson, L. Truelstrup Hansen, C.K. Yost, and G.S. Bezanson. 2014. Baseline and storm event monitoring of Bacteroidales marker concentrations and enteric pathogen presence in a rural Canadian watershed. Water Res. 60:278-288. doi:10.1016/j.watres.2014.04.039
-
(2014)
Water Res.
, vol.60
, pp. 278-288
-
-
Ridley, C.1
Jamieson, R.C.2
Truelstrup Hansen, L.3
Yost, C.K.4
Bezanson, G.S.5
-
46
-
-
79952574163
-
State of the art molecular markers for fecal pollution source tracking in water
-
Roslev, P., and A.S. Bukh. 2011. State of the art molecular markers for fecal pollution source tracking in water. Appl. Microbiol. Biotechnol. 89:1341-1355. doi:10.1007/s00253-010-3080-7
-
(2011)
Appl. Microbiol. Biotechnol.
, vol.89
, pp. 1341-1355
-
-
Roslev, P.1
Bukh, A.S.2
-
47
-
-
79959798623
-
Detection of the human specific Bacteroides genetic marker provides evidence of widespread sewage contamination of stormwater in the urban environment
-
Sauer, E.P., J.L. Vandewalle, M.J. Bootsma, and S.L. McLellan. 2011. Detection of the human specific Bacteroides genetic marker provides evidence of widespread sewage contamination of stormwater in the urban environment. Water Res. 45:4081-4091. doi:10.1016/j.watres.2011.04.049
-
(2011)
Water Res.
, vol.45
, pp. 4081-4091
-
-
Sauer, E.P.1
Vandewalle, J.L.2
Bootsma, M.J.3
McLellan, S.L.4
-
48
-
-
48249129596
-
Real-time PCR detection and quantification of nine potential sources of fecal contamination by analysis of mitochondrial cytochrome b targets
-
Schill, W.B., and M.V. Mathes. 2008. Real-time PCR detection and quantification of nine potential sources of fecal contamination by analysis of mitochondrial cytochrome b targets. Environ. Sci. Technol. 42:5229-5234. doi:10.1021/es800051z
-
(2008)
Environ. Sci. Technol.
, vol.42
, pp. 5229-5234
-
-
Schill, W.B.1
Mathes, M.V.2
-
49
-
-
77956603783
-
Presence of Bacteroidales as a predictor of pathogens in surface waters of the central California coast
-
Schriewer, A., W.A. Miller, B.A. Byrne, M.A. Miller, S. Oates, P.A. Conrad, and S. Wuertz. 2010. Presence of Bacteroidales as a predictor of pathogens in surface waters of the central California coast. Appl. Environ. Microbiol. 76:5802-5814. doi:10.1128/AEM.00635-10
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 5802-5814
-
-
Schriewer, A.1
Miller, W.A.2
Byrne, B.A.3
Miller, M.A.4
Oates, S.5
Conrad, P.A.6
Wuertz, S.7
-
50
-
-
12744260019
-
Detection and quantification of the human-specific HF183 Bacteroides 16S rRNA genetic marker with real-time PCR for assessment of human faecal pollution in freshwater
-
Seurinck, S., T. Defoirdt, W. Verstraete, and S.D. Siciliano. 2005. Detection and quantification of the human-specific HF183 Bacteroides 16S rRNA genetic marker with real-time PCR for assessment of human faecal pollution in freshwater. Environ. Microbiol. 7:249-259. doi:10.1111/j.1462-2920.2004.00702.x
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 249-259
-
-
Seurinck, S.1
Defoirdt, T.2
Verstraete, W.3
Siciliano, S.D.4
-
51
-
-
38949210327
-
Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution
-
Shanks, O.C., E. Atikovic, A.D. Blackwood, J. Lu, R.T. Noble, J.S. Domingo, and S. Seifring. 2008. Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution. Appl. Environ. Microbiol. 74:745-752. doi:10.1128/AEM.01843-07
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 745-752
-
-
Shanks, O.C.1
Atikovic, E.2
Blackwood, A.D.3
Lu, J.4
Noble, R.T.5
Domingo, J.S.6
Seifring, S.7
-
52
-
-
84880281278
-
Sewage pollution in urban stormwater runoff as evident from the widespread presence of multiple microbial and chemical source tracking markers
-
Sidhu, J.S., W. Ahmed, W. Gernjak, R. Aryal, D. McCarthy, A. Palmer, and S. Toze. 2013. Sewage pollution in urban stormwater runoff as evident from the widespread presence of multiple microbial and chemical source tracking markers. Sci. Total Environ. 463-464:488-496. doi:10.1016/j. scitotenv.2013.06.020
-
(2013)
Sci. Total Environ
, vol.463-464
, pp. 488-496
-
-
Sidhu, J.S.1
Ahmed, W.2
Gernjak, W.3
Aryal, R.4
McCarthy, D.5
Palmer, A.6
Toze, S.7
-
53
-
-
0037115080
-
Critical review microbial source tracking: State of the science
-
Simpson, J.M., J.W.S. Domingo, and D.J. Reasoner. 2002. Critical review microbial source tracking: State of the science. Environ. Sci. Technol. 36:5279- 5288. doi:10.1021/es026000b
-
(2002)
Environ. Sci. Technol.
, vol.36
, pp. 5279-5288
-
-
Simpson, J.M.1
Domingo, J.W.S.2
Reasoner, D.J.3
-
54
-
-
61549141729
-
Growing season surface water loading of fecal indicator organisms within a rural watershed
-
Sinclair, A., D. Hebb, R.C. Jamieson, R.J. Gordon, K. Benedict, K. Fuller, G.W. Stratton, and A. Madani. 2009. Growing season surface water loading of fecal indicator organisms within a rural watershed. Water Res. 43:1199- 1206. doi:10.1016/j.watres.2008.12.006
-
(2009)
Water Res.
, vol.43
, pp. 1199-1206
-
-
Sinclair, A.1
Hebb, D.2
Jamieson, R.C.3
Gordon, R.J.4
Benedict, K.5
Fuller, K.6
Stratton, G.W.7
Madani, A.8
-
55
-
-
84930038972
-
Comparison of the prevalence and diversity of Listeria species and Listeria monocytogenes in an urban and agricultural source water system in Nova Scotia
-
Stea, E.C., L.M. Purdue, R.C. Jamieson, C.K. Yost, and L. Truelstrup Hansen. 2015. Comparison of the prevalence and diversity of Listeria species and Listeria monocytogenes in an urban and agricultural source water system in Nova Scotia. Appl. Environ. Microbiol. 81:3812-3822. doi:10.1128/ AEM.00416-15
-
(2015)
Appl. Environ. Microbiol.
, vol.81
, pp. 3812-3822
-
-
Stea, E.C.1
Purdue, L.M.2
Jamieson, R.C.3
Yost, C.K.4
Truelstrup Hansen, L.5
-
56
-
-
34247622189
-
Performance, design, and analysis in microbial source tracking studies
-
Stoeckel, D.M., and V.J. Harwood. 2007. Performance, design, and analysis in microbial source tracking studies. Appl. Environ. Microbiol. 73:2405- 2415. doi:10.1128/AEM.02473-06
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 2405-2415
-
-
Stoeckel, D.M.1
Harwood, V.J.2
-
57
-
-
70350374890
-
SYSTAT Software version 11
-
Systat Software Inc., San Jose, CA, USA
-
SYSTAT Software version 11. 2004, Systat Software Inc., San Jose, CA, USA
-
(2004)
-
-
-
58
-
-
84860427695
-
Persistence of hostassociated Bacteroidales gene markers and their quantitative detection in an urban and agricultural mixed prairie watershed
-
Tambalo, D.D., B. Fremaux, T. Boa, and C.K. Yost. 2012. Persistence of hostassociated Bacteroidales gene markers and their quantitative detection in an urban and agricultural mixed prairie watershed. Water Res. 46:2891- 2904. doi:10.1016/j.watres.2012.02.048
-
(2012)
Water Res.
, vol.46
, pp. 2891-2904
-
-
Tambalo, D.D.1
Fremaux, B.2
Boa, T.3
Yost, C.K.4
-
59
-
-
0036209188
-
Emerging waterborne infections: Contributing factors, agents and detection tools
-
Theron, J., and T.E. Cloete. 2002. Emerging waterborne infections: Contributing factors, agents and detection tools. Crit. Rev. Microbiol. 28:1-28. doi:10.1080/1040-840291046669
-
(2002)
Crit. Rev. Microbiol.
, vol.28
, pp. 1-28
-
-
Theron, J.1
Cloete, T.E.2
-
60
-
-
84976539597
-
The revised total coliform rule (RTCR) state implementation guidance-Interim final
-
EPA 816-R-14-004, December 2014. (accessed 12 May 2015).
-
USEPA. 2014. The revised total coliform rule (RTCR) state implementation guidance-Interim final. EPA 816-R-14-004, December 2014. http:// water.epa.gov/lawsregs/rulesregs/sdwa/tcr/upload/epa816r14004.pdf (accessed 12 May 2015).
-
(2014)
-
-
-
61
-
-
80052726744
-
Comparison of the host specificities of two Bacteroidales quantitative PCR assays used for tracking human fecal contamination
-
Van De Werfhorst, L.C., B. Sercu, and P.A. Holden. 2011. Comparison of the host specificities of two Bacteroidales quantitative PCR assays used for tracking human fecal contamination. Appl. Environ. Microbiol. 77:6258- 6260. doi:10.1128/AEM.00239-11
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 6258- 6260
-
-
Van De Werfhorst, L.C.1
Sercu, B.2
Holden, P.A.3
-
62
-
-
84913528801
-
An environmental survey of surface waters using mitochondrial DNA from human, bovine and porcine origin as fecal source tracking markers
-
Villemur, R., M. Imbeau, M.N. Vuong, L. Masson, and P. Payment. 2015. An environmental survey of surface waters using mitochondrial DNA from human, bovine and porcine origin as fecal source tracking markers. Water Res. 69:143-153. doi:10.1016/j.watres.2014.10.063
-
(2015)
Water Res.
, vol.69
, pp. 143-153
-
-
Villemur, R.1
Imbeau, M.2
Vuong, M.N.3
Masson, L.4
Payment, P.5
-
63
-
-
78651455291
-
Impact of urbanization and agriculture on the occurrence of bacterial pathogens and stx genes in coastal waterbodies of central California
-
Walters, S.P., A.L. Thebo, and A.B. Boehm. 2011. Impact of urbanization and agriculture on the occurrence of bacterial pathogens and stx genes in coastal waterbodies of central California. Water Res. 45:1752-1762. doi:10.1016/j.watres.2010.11.032
-
(2011)
Water Res.
, vol.45
, pp. 1752-1762
-
-
Walters, S.P.1
Thebo, A.L.2
Boehm, A.B.3
-
64
-
-
84885072685
-
Coherence among different microbial source tracking markers in a small agricultural stream with or without livestock exclusion practices
-
Wilkes, G., J. Brassard, T.A. Edge, V. Gannon, C.C. Jokinen, T.H. Jones, and D.R. Lapen. 2013. Coherence among different microbial source tracking markers in a small agricultural stream with or without livestock exclusion practices. Appl. Environ. Microbiol. 79:6207-6219. doi:10.1128/ AEM.01626-13
-
(2013)
Appl. Environ. Microbiol.
, vol.79
, pp. 6207-6219
-
-
Wilkes, G.1
Brassard, J.2
Edge, T.A.3
Gannon, V.4
Jokinen, C.C.5
Jones, T.H.6
Lapen, D.R.7
-
65
-
-
64849108242
-
Seasonal relationships among indicator bacteria, pathogenic bacteria, Cryptosporidium oocysts, Giardia cysts, and hydrological indices for surface waters within an agricultural landscape
-
Wilkes, G., T. Edge, V. Gannon, C. Jokinen, E. Lyautey, D. Medeiros, N. Neumann, N. Ruecker, E. Topp, and D.R. Lapen. 2009. Seasonal relationships among indicator bacteria, pathogenic bacteria, Cryptosporidium oocysts, Giardia cysts, and hydrological indices for surface waters within an agricultural landscape. Water Res. 43:2209-2223. doi:10.1016/j.watres.2009.01.033
-
(2009)
Water Res.
, vol.43
, pp. 2209-2223
-
-
Wilkes, G.1
Edge, T.2
Gannon, V.3
Jokinen, C.4
Lyautey, E.5
Medeiros, D.6
Neumann, N.7
Ruecker, N.8
Topp, E.9
Lapen, D.R.10
|