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Volumn 10, Issue , 2010, Pages

Escherichia coli phylogenetic group determination and its application in the identification of the major animal source of fecal contamination

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIUM CONTAMINATION; CHICKEN; CONTAMINATION; COW; ESCHERICHIA COLI; FECES; GENETIC MARKER; GOAT; HUMAN; LOGISTIC REGRESSION ANALYSIS; MICROBIAL DIVERSITY; NONHUMAN; PARTIAL LEAST SQUARES REGRESSION; PHYLOGENY; SHEEP; SPECIES DISTRIBUTION; STRAIN DIFFERENCE; SWINE; WATER CONTAMINATION; WRITING; ANIMAL; BACTERIAL GENE; CATTLE; CLASSIFICATION; CLUSTER ANALYSIS; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; MICROBIOLOGY;

EID: 77952795486     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-10-161     Document Type: Article
Times cited : (222)

References (41)
  • 1
    • 34547531503 scopus 로고    scopus 로고
    • Fecal source tracking, the indicator paradigm, and managing water quality
    • DOI 10.1016/j.watres.2007.06.056, PII S0043135407004253
    • Fecal source tracking, the indicator paradigm, and managing water quality. Field KG, Samadpour M, Water Research 2007 41 3517 3538 10.1016/j.watres.2007.06.056 17643471 (Pubitemid 47179855)
    • (2007) Water Research , vol.41 , Issue.16 , pp. 3517-3538
    • Field, K.G.1    Samadpour, M.2
  • 2
    • 33646592369 scopus 로고    scopus 로고
    • United States Environmental Protection Agency U.S. Environmental Protection Agency
    • Microbial source tracking guide document. EPA/600/R-05/064. United States Environmental Protection Agency, U.S. Environmental Protection Agency 2005
    • (2005) Microbial Source Tracking Guide Document. EPA/600/R-05/064
  • 3
    • 4444356159 scopus 로고    scopus 로고
    • Source tracking fecal bacteria in water: A critical review of current methods
    • DOI 10.1016/j.jenvman.2004.06.001, PII S030147970400129X
    • Source tracking fecal bacteria in water: a critical review of current methods. Meays CL, Broersma K, Nordin R, Mazumder A, J Environ Manage 2004 73 71 79 10.1016/j.jenvman.2004.06.001 15327848 (Pubitemid 39185986)
    • (2004) Journal of Environmental Management , vol.73 , Issue.1 , pp. 71-79
    • Meays, C.L.1    Broersma, K.2    Nordin, R.3    Mazumder, A.4
  • 5
    • 33749383917 scopus 로고    scopus 로고
    • Identification of forces shaping the commensal Escherichia coli genetic structure by comparing animal and human isolates
    • DOI 10.1111/j.1462-2920.2006.01077.x
    • Identification of forces shaping the commensal Escherichia coli genetic structure by comparing animal and human isolates. Escobar-Páramo P, Le Menac'h A, Le Gall T, Amorin C, Gouriou S, Picard B, Skurnik D, Denamur E, Environ Microbiol 2006 8 1975 1984 10.1111/j.1462-2920.2006.01077.x 17014496 (Pubitemid 44506893)
    • (2006) Environmental Microbiology , vol.8 , Issue.11 , pp. 1975-1984
    • Escobar-Paramo, P.1    Le Menac'h, A.2    Le Gall, T.3    Amorin, C.4    Gouriou, S.5    Picard, B.6    Skurnik, D.7    Denamur, E.8
  • 6
    • 0025096192 scopus 로고
    • Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli
    • Phylogenetic distribution of branched RNS-linked multicopy single-stranded DNA among natural isolates of Escherichia coli. Herzer PJ, Inouye S, Inouye M, Whittan TS, J Bacteriol 1990 172 6175 6181 1699928 (Pubitemid 20372753)
    • (1990) Journal of Bacteriology , vol.172 , Issue.11 , pp. 6175-6181
    • Herzer, P.J.1    Inouye, S.2    Inouye, M.3    Whittam, T.S.4
  • 7
    • 0021367325 scopus 로고
    • Standard reference strains of Escherichia coli from natural populations
    • Standard reference strains of Escherichia coli from natural populations. Ochman H, Selander RK, J Bacteriol 1984 157 690 693 6363394 (Pubitemid 14190968)
    • (1984) Journal of Bacteriology , vol.157 , Issue.2 , pp. 690-693
    • Ochman, H.1    Selander, R.K.2
  • 8
    • 0022544449 scopus 로고
    • Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics
    • Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics. Selander RK, Caugant DA, Ochman H, Musser M, Gilmour MN, Whittam TS, Appl Environ Microbiol 1986 51 873 884 2425735 (Pubitemid 16078577)
    • (1986) Applied and Environmental Microbiology , vol.51 , Issue.5 , pp. 873-884
    • Selander, R.K.1    Caugant, D.A.2    Ochman, H.3
  • 9
    • 0031741481 scopus 로고    scopus 로고
    • Escherichia coli molecular phylogeny using the incongruence length difference test
    • Escherichia coli molecular phylogeny using the incongruence length difference test. Lecointre G, Rachdi L, Darlu P, Denamur E, Mol Biol Evol 1998 15 1685 1695 9866203 (Pubitemid 28550992)
    • (1998) Molecular Biology and Evolution , vol.15 , Issue.12 , pp. 1685-1695
    • LeCointre, G.1    Rachdi, L.2    Darlu, P.3    Denamur, E.4
  • 10
    • 0346882653 scopus 로고    scopus 로고
    • The distribution and genetic structure of Escherichia coli in Australian vertebrates: Host and geographic effects
    • The distribution and genetic structure of Escherichia coli in Australian vertebrates: host and geographic effects. Gordon DM, Cowling A, Microbiology 2003 149 3575 3586 10.1099/mic.0.26486-0 14663089 (Pubitemid 38016684)
    • (2003) Microbiology , vol.149 , Issue.12 , pp. 3575-3586
    • Gordon, D.M.1    Cowling, A.2
  • 11
    • 51649113326 scopus 로고    scopus 로고
    • The influence of ecological factors on the distribution and genetic structure of Escherichia coli. in Escherichia coli and Salmonella typhimurium
    • http://www.ecosal.org/ecosal/index.jsp
    • The influence of ecological factors on the distribution and genetic structure of Escherichia coli. In Escherichia coli and Salmonella typhimurium. Gordon DM, American Society for Microbiology 2004 http://www.ecosal.org/ecosal/ index.jsp
    • (2004) American Society for Microbiology
    • Gordon, D.M.1
  • 12
    • 34547702305 scopus 로고    scopus 로고
    • Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches
    • DOI 10.1111/j.1462-2920.2007.01341.x
    • Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches. Walk ST, Alm EW, Calhoun LM, Mladonicky JM, Whittam TS, Environ Microbiol 2007 9 2274 2288 10.1111/j.1462-2920.2007.01341.x 17686024 (Pubitemid 47222119)
    • (2007) Environmental Microbiology , vol.9 , Issue.9 , pp. 2274-2288
    • Walk, S.T.1    Alm, E.W.2    Calhoun, L.M.3    Mladonicky, J.M.4    Whittam, T.S.5
  • 13
    • 0031963154 scopus 로고    scopus 로고
    • Distribution of chromosome length variation in natural isolates of Escherichia coli
    • Distribution of chromosome length variation in natural isolates of Escherichia coli. Bergthorsson U, Ochman H, Mol Biol Evol 1998 15 6 16 9491600 (Pubitemid 28046976)
    • (1998) Molecular Biology and Evolution , vol.15 , Issue.1 , pp. 6-16
    • Bergthorsson, U.1    Ochman, H.2
  • 14
    • 0035170978 scopus 로고    scopus 로고
    • Phylogenetic distribution of extraintestinal virulence-associated traits in Escherichia coli
    • DOI 10.1086/317656
    • Phylogenetic distribution of extraintestinal virulence-associated traits in Escherichia coli. Johnson JR, Delavari P, Kuskowski M, Stell AL, J Infect Dis 2001 183 78 88 10.1086/317656 11106538 (Pubitemid 32043044)
    • (2001) Journal of Infectious Diseases , vol.183 , Issue.1 , pp. 78-88
    • Johnson, J.R.1    Delavari, P.2    Kuskowski, M.3    Stell, A.L.4
  • 15
    • 0033963533 scopus 로고    scopus 로고
    • Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise
    • DOI 10.1086/315217
    • Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise. Johnson JR, Stell AL, J Infect Dis 2000 181 261 272 10.1086/315217 10608775 (Pubitemid 30049057)
    • (2000) Journal of Infectious Diseases , vol.181 , Issue.1 , pp. 261-272
    • Johnson, J.R.1    Stell, A.L.2
  • 17
    • 0031936736 scopus 로고    scopus 로고
    • Phylogenetic analysis of Escherichia coli strains causing neonatal meningitis suggests horizontal gene transfer from a predominant pool of highly virulent B2 group strains
    • Phylogenetic analysis of Escherichia coli strains causing neonatal meningitis suggests horizontal gene transfer from a predominant pool of highly virulent B2 group strain. Bingen E, Picard B, Brahimi N, Mathy S, Desjardins P, Elion J, Denamur E, J Infect Dis 1998 177 642 650 10.1086/514217 9498443 (Pubitemid 28099878)
    • (1998) Journal of Infectious Diseases , vol.177 , Issue.3 , pp. 642-650
    • Bingen, E.1    Picard, B.2    Brahimi, N.3    Mathy, S.4    Desjardins, P.5    Elion, J.6    Denamur, E.7
  • 18
    • 0031004145 scopus 로고    scopus 로고
    • Evolutionary relationships among pathogenic and nonpathogenic Escherichia coli strains inferred from multilocus enzyme electrophoresis and mdh sequence studies
    • Evolutionary relationships among pathogenic and nonpathogenic Escherichia coli strains inferred from multilocus enzyme electrophoresis and mdh sequence studies. Pupo GM, Karaolis DKR, Lan R, Reeves PR, Infect Immun 1997 65 2685 2692 9199437 (Pubitemid 27264095)
    • (1997) Infection and Immunity , vol.65 , Issue.7 , pp. 2685-2692
    • Pupo, G.M.1    Karaolis, D.K.R.2    Lan, R.3    Reeves, P.R.4
  • 19
    • 0033775633 scopus 로고    scopus 로고
    • Rapid and simple determination of the Escherichia coli phylogenetic group
    • 10.1128/AEM.66.10.4555-4558.2000 11010916
    • Rapid and simple determination of the Escherichia coli phylogenetic group. Clermont O, Bonacorsi S, Bingen E, Appl Environ Microbiol 2000 66 4555 4558 10.1128/AEM.66.10.4555-4558.2000 11010916
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4555-4558
    • Clermont, O.1    Bonacorsi, S.2    Bingen, E.3
  • 20
    • 48849111003 scopus 로고    scopus 로고
    • Phylogenetic background, virulence gene profiles, and genomic diversity in commensal Escherichia coli isolated from ten mammal species living in one zoo
    • 10.1016/j.vetmic.2008.02.019 18423907
    • Phylogenetic background, virulence gene profiles, and genomic diversity in commensal Escherichia coli isolated from ten mammal species living in one zoo. Baldy-Chudzik K, Mackiewics P, Stosik M, Vet Microbiol 2008 131 173 184 10.1016/j.vetmic.2008.02.019 18423907
    • (2008) Vet Microbiol , vol.131 , pp. 173-184
    • Baldy-Chudzik, K.1    MacKiewics, P.2    Stosik, M.3
  • 22
    • 33344464667 scopus 로고
    • Measurement of diversity
    • 10.1038/163688a0
    • Measurement of diversity. Simpson EH, Nature 1949 163 688 10.1038/163688a0
    • (1949) Nature , vol.163 , pp. 688
    • Simpson, E.H.1
  • 23
    • 45849092960 scopus 로고    scopus 로고
    • Phylogenetic group distribution among Escherichia coli isolated from rivers in São Paulo State, Brazil
    • 10.1007/s11274-007-9644-8
    • Phylogenetic group distribution among Escherichia coli isolated from rivers in São Paulo State, Brazil. Orsi RH, Stoppe NC, Sato MIZ, Prado PL, Ottoboni LMM, World J Microbiol Biotechnol 2008 24 1573 1577 10.1007/s11274-007-9644-8
    • (2008) World J Microbiol Biotechnol , vol.24 , pp. 1573-1577
    • Orsi, R.H.1    Stoppe, N.C.2    Sato, M.I.Z.3    Prado, P.L.4    Ottoboni, L.M.M.5
  • 25
    • 20444364909 scopus 로고    scopus 로고
    • Comparative gut microflora, metabolic challenges, and potential opportunities
    • Comparative gut microflora, metabolic challenges, and potential opportunities. Apajalahti j, J Appl Poult Res 2005 14 444 453 (Pubitemid 40802267)
    • (2005) Journal of Applied Poultry Research , vol.14 , Issue.2 , pp. 444-453
    • Apajalahti, J.1
  • 26
    • 56849086996 scopus 로고    scopus 로고
    • Distribution of genes encoding iron uptake systems among enteroaggregative Escherichia coli strains isolated from adults with irritable bowel syndrome
    • DOI 10.1111/j.1469-0691.2008.02093.x
    • Distribution of genes encoding iron uptake systems among enteroaggregative Escherichia coli strains isolated from adults with irritable bowel syndrome. Sobieszczaska BM, Clin Microbiol Infect 2008 14 1083 1086 10.1111/j.1469-0691.2008.02093.x 19040481 (Pubitemid 352748853)
    • (2008) Clinical Microbiology and Infection , vol.14 , Issue.11 , pp. 1083-1086
    • Sobieszczanska, B.M.1
  • 27
    • 0031885976 scopus 로고    scopus 로고
    • Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution
    • Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution. Boyd EF, Hartl DL, J Bacteriol 1998 180 1159 1165 9495754 (Pubitemid 28119473)
    • (1998) Journal of Bacteriology , vol.180 , Issue.5 , pp. 1159-1165
    • Boyd, E.F.1    Hartl, D.L.2
  • 28
    • 35848958139 scopus 로고    scopus 로고
    • Extraintestinal virulence is a coincidental by-product of commensalism in b2 phylogenetic group Escherichia coli strains
    • DOI 10.1093/molbev/msm172
    • Extraintestinal virulence is a coincidental by-product of commensalism in B2 phylogenetic group Escherichia coli strains. Le Gall T, Clermont O, Gouriou S, Picard B, Nassif X, Denamur E, Tenaillon O, Mol Biol Evol 2007 24 2373 2384 10.1093/molbev/msm172 17709333 (Pubitemid 350060443)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.11 , pp. 2373-2384
    • Le Gall, T.1    Clermont, O.2    Gouriou, S.3    Picard, B.4    Nassif, X.5    Denamur, E.6    Tenaillon, O.7
  • 29
    • 12744261235 scopus 로고    scopus 로고
    • Characterization of Escherichia coli O157: H7 isolates causing haemolytic uraemic syndrome in France
    • 10.1099/jmm.0.45841-0 15591258
    • Characterization of Escherichia coli O157: H7 isolates causing haemolytic uraemic syndrome in France. Bidet P, Mariani-Kurkdjian P, Grimont F, Brahimi N, Courroux C, Grimont P, Bingen E, J Med Microbiol 2005 54 71 75 10.1099/jmm.0.45841-0 15591258
    • (2005) J Med Microbiol , vol.54 , pp. 71-75
    • Bidet, P.1    Mariani-Kurkdjian, P.2    Grimont, F.3    Brahimi, N.4    Courroux, C.5    Grimont, P.6    Bingen, E.7
  • 30
    • 33846277597 scopus 로고    scopus 로고
    • Fidelity of bacterial source tracking: Escherichia coli vs Enterococcus spp and minimizing assignment of isolates from nonlibrary sources
    • DOI 10.1111/j.1365-2672.2006.03077.x
    • Fidelity of bacterial source tracking: Escherichia coli vs Enterococcus spp and minimizing assignment of isolates from nonlibrary sources. Hassan WM, Ellender RD, Wang SY, J Appl Microbiol 2007 102 591 598 10.1111/j.1365-2672. 2006.03077.x 17241366 (Pubitemid 46115027)
    • (2007) Journal of Applied Microbiology , vol.102 , Issue.2 , pp. 591-598
    • Hassan, W.M.1    Ellender, R.D.2    Wang, S.Y.3
  • 31
    • 34548236950 scopus 로고    scopus 로고
    • Evaluation of repetitive extragenic palindromic-PCR for discrimination of fecal Escherichia coli from humans, and different domestic- and wild-animals
    • Evaluation of repetitive extragenic palindromic-PCR for discrimination of fecal Escherichia coli from humans, and different domestic- and wild-animals. Mohapatra B, Broersma K, Nordin R, Mazumder A, Microbiol Immunol 2007 51 733 740 17704635 (Pubitemid 47328073)
    • (2007) Microbiology and Immunology , vol.51 , Issue.8 , pp. 733-740
    • Mohapatra, B.R.1    Broersma, K.2    Nordin, R.3    Mazumder, A.4
  • 32
    • 0034996147 scopus 로고    scopus 로고
    • Geographical structure and host specificity in bacteria and the implications for tracing the source of coliform contamination
    • Geographical structure and host specificity in bacteria and the implications for tracing the source of coliform contamination. Gordon DM, Microbiology 2001 147 1079 1085 11320111 (Pubitemid 32454626)
    • (2001) Microbiology , vol.147 , Issue.5 , pp. 1079-1085
    • Gordon, D.M.1
  • 34
    • 0030806514 scopus 로고    scopus 로고
    • Parasitology meets ecology on its own terms: Margolis et al. revisited
    • DOI 10.2307/3284227
    • Parasitology meets ecology on its own terms: Margolis et al. revisited. Bush AO, Lafferty KD, Lotz JM, Shostak AW, J Parasitol 1997 83 575 583 10.2307/3284227 9267395 (Pubitemid 27357505)
    • (1997) Journal of Parasitology , vol.83 , Issue.4 , pp. 575-583
    • Bush, A.O.1    Lafferty, K.D.2    Lotz, J.M.3    Shostak, A.W.4
  • 35
    • 0002425073 scopus 로고
    • The structure of lizard communities
    • 10.1146/annurev.es.04.110173.000413
    • The structure of lizard communities. Pianka ER, Ann Rev Ecol Syst 1973 4 53 74 10.1146/annurev.es.04.110173.000413
    • (1973) Ann Rev Ecol Syst , vol.4 , pp. 53-74
    • Pianka, E.R.1
  • 38
    • 33749469755 scopus 로고    scopus 로고
    • TANAGRA: Un logiciel gratuit pour l'enseignement et la recherché
    • TANAGRA: un logiciel gratuit pour l'enseignement et la recherché Rakotomalala R, In: Actes de EGC 2005 2 697 702
    • (2005) Actes de EGC , vol.2 , pp. 697-702
    • Rakotomalala, R.1
  • 40
    • 33644552427 scopus 로고    scopus 로고
    • Shigatoxigenic Escherichia coli serogroup O157, O111 and O113 in feces, water and milk samples from dairy farms
    • 10.1590/S1517-83822005000300003
    • Shigatoxigenic Escherichia coli serogroup O157, O111 and O113 in feces, water and milk samples from dairy farms. Vicente HIG, Amaral LA, Cerqueira AMF, Braz J Microbiol 2005 36 217 222 10.1590/S1517-83822005000300003
    • (2005) Braz J Microbiol , vol.36 , pp. 217-222
    • Vicente, H.I.G.1    Amaral, L.A.2    Cerqueira, A.M.F.3


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