-
1
-
-
84899423446
-
The niche of Escherichia coli
-
and () . In . Walk, S.T., and Feng, P.C.H. (eds). Washington, DC, USA: ASM Press -.
-
Alm, E.W., Walk, S.T., and Gordon, D.M. (2011) The niche of Escherichia coli. In Population Genetics of Bacteria. Walk, S.T., and Feng, P.C.H. (eds). Washington, DC, USA: ASM Press, pp. 107-123.
-
(2011)
Population Genetics of Bacteria
, pp. 107-123
-
-
Alm, E.W.1
Walk, S.T.2
Gordon, D.M.3
-
2
-
-
84857649533
-
The evolution of the Escherichia coli phylogeny
-
and () . : -.
-
Chaudhuri, R.R., and Henderson, I.R. (2012) The evolution of the Escherichia coli phylogeny. Infect Genet Evol 12: 214-226.
-
(2012)
Infect Genet Evol
, vol.12
, pp. 214-226
-
-
Chaudhuri, R.R.1
Henderson, I.R.2
-
3
-
-
0033775633
-
Rapid and simple determination of Escherichia coli phylogenetic group
-
and () . : -.
-
Clermont, O., Bonacorsi, S., and Bingen, E. (2000) Rapid and simple determination of Escherichia coli phylogenetic group. Appl Environ Microbiol 66: 4555-4558.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4555-4558
-
-
Clermont, O.1
Bonacorsi, S.2
Bingen, E.3
-
4
-
-
16544365246
-
Characterization of an anonymous molecular marker strongly linked to Escherichia coli strains causing neonatal meningitis
-
and () . : -.
-
Clermont, O., Bonacorsi, S., and Bingen, E. (2004) Characterization of an anonymous molecular marker strongly linked to Escherichia coli strains causing neonatal meningitis. J Clin Microbiol 42: 1770-1772.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 1770-1772
-
-
Clermont, O.1
Bonacorsi, S.2
Bingen, E.3
-
5
-
-
40949144151
-
Evidence for a human-specific Escherichia coli clone
-
and () . : -.
-
Clermont, O., Lescat, M., O'Brien, C.L., Gordon, D.M., Tenaillon, O., and Denamur, E. (2008) Evidence for a human-specific Escherichia coli clone. Environ Microbiol 10: 1000-10006.
-
(2008)
Environ Microbiol
, vol.10
, pp. 1000-10006
-
-
Clermont, O.1
Lescat, M.2
O'Brien, C.L.3
Gordon, D.M.4
Tenaillon, O.5
Denamur, E.6
-
6
-
-
79953106430
-
Animal and human pathogenic Escherichia coli strains share common genetic backgrounds
-
Clermont, O., Olier, M., Hoede, C., Diancourt, L., Brisse, S., Keroudean, M., etal. (2011a) Animal and human pathogenic Escherichia coli strains share common genetic backgrounds. Infect Genet Evol 11: 654-662.
-
(2011)
Infect Genet Evol
, vol.11
, pp. 654-662
-
-
Clermont, O.1
Olier, M.2
Hoede, C.3
Diancourt, L.4
Brisse, S.5
Keroudean, M.6
-
7
-
-
80052613392
-
Characterization of the cryptic Escherichia lineages: rapid identification and prevalence
-
and () . : -.
-
Clermont, O., Gordon, D.M., Brisse, S., Walk, S.T., and Denamur, E. (2011b) Characterization of the cryptic Escherichia lineages: rapid identification and prevalence. Environ Microbiol 13: 2468-2477.
-
(2011)
Environ Microbiol
, vol.13
, pp. 2468-2477
-
-
Clermont, O.1
Gordon, D.M.2
Brisse, S.3
Walk, S.T.4
Denamur, E.5
-
8
-
-
84865176545
-
Improved multiplex PCR strategy for rapid assignment of the four major Escherichia coli phylogenetic groups
-
and () . : -.
-
Doumith, M., Day, M.J., Hope, R., Wain, J., and Woodford, N. (2012) Improved multiplex PCR strategy for rapid assignment of the four major Escherichia coli phylogenetic groups. J Clin Microbiol 50: 3108-3110.
-
(2012)
J Clin Microbiol
, vol.50
, pp. 3108-3110
-
-
Doumith, M.1
Day, M.J.2
Hope, R.3
Wain, J.4
Woodford, N.5
-
9
-
-
0022005141
-
Escherichia fergusonii and Enterobacter taylorae, two new species of Enterobacteriaceae isolated from clinical specimens
-
Farmer, J.J., 3rd, Fanning, G.R., Davis, B.R., O'Hara, C.M., Riddle, C., Hickman-Brenner, F.W., etal. (1985) Escherichia fergusonii and Enterobacter taylorae, two new species of Enterobacteriaceae isolated from clinical specimens. J Clin Microbiol 21: 77-81.
-
(1985)
J Clin Microbiol
, vol.21
, pp. 77-81
-
-
Farmer 3rd, J.J.1
Fanning, G.R.2
Davis, B.R.3
O'Hara, C.M.4
Riddle, C.5
Hickman-Brenner, F.W.6
-
10
-
-
77954710528
-
Strain typing and the ecological structure of Escherichia coli
-
Gordon, D.M. (2010) Strain typing and the ecological structure of Escherichia coli. J AOAC Int 93: 974-984.
-
(2010)
J AOAC Int
, vol.93
, pp. 974-984
-
-
Gordon, D.M.1
-
11
-
-
51649120558
-
Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method
-
and () . : -.
-
Gordon, D.M., Clermont, O., Tolley, H., and Denamur, E. (2008) Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method. Environ Microbiol 10: 2484-2496.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2484-2496
-
-
Gordon, D.M.1
Clermont, O.2
Tolley, H.3
Denamur, E.4
-
12
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
and () . : -.
-
Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W., and Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
13
-
-
60549112381
-
Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains
-
Jaureguy, F., Landraud, L., Passet, V., Diancourt, L., Frapy, E., Guigon, G., etal. (2008) Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains. BMC Genomics 9: 560.
-
(2008)
BMC Genomics
, vol.9
, pp. 560
-
-
Jaureguy, F.1
Landraud, L.2
Passet, V.3
Diancourt, L.4
Frapy, E.5
Guigon, G.6
-
14
-
-
0033963533
-
Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise
-
and () . : -.
-
Johnson, J.R., and Stell, A.L. (2000) Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise. J Infect Dis 181: 261-272.
-
(2000)
J Infect Dis
, vol.181
, pp. 261-272
-
-
Johnson, J.R.1
Stell, A.L.2
-
15
-
-
35848958139
-
Extraintestinal virulence is a coincidental by-product of commensalism in B2 phylogenetic group Escherichia coli strains
-
and () . : -.
-
Le Gall, T., Clermont, O., Gouriou, S., Picard, B., Nassif, X., Denamur, E., and Tenaillon, O. (2007) Extraintestinal virulence is a coincidental by-product of commensalism in B2 phylogenetic group Escherichia coli strains. Mol Biol Evol 24: 2373-2384.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2373-2384
-
-
Le Gall, T.1
Clermont, O.2
Gouriou, S.3
Picard, B.4
Nassif, X.5
Denamur, E.6
Tenaillon, O.7
-
16
-
-
74949113330
-
aes, the gene encoding the esterase B in Escherichia coli, is a powerful phylogenetic marker of the species
-
Lescat, M., Hoede, C., Clermont, O., Garry, L., Darlu, P., Tuffery, P., etal. (2009) aes, the gene encoding the esterase B in Escherichia coli, is a powerful phylogenetic marker of the species. BMC Microbiol 9: 273.
-
(2009)
BMC Microbiol
, vol.9
, pp. 273
-
-
Lescat, M.1
Hoede, C.2
Clermont, O.3
Garry, L.4
Darlu, P.5
Tuffery, P.6
-
17
-
-
84873303939
-
Commensal Escherichia coli strains in Guiana reveal a high genetic diversity with host-dependant population structure
-
DOI: 10.1111/j.1758-2229.2012.00374.x.
-
Lescat, M., Clermont, O., Woerther, P.L., Glodt, J., Dion, S., Skurnik, D., etal. (2012) Commensal Escherichia coli strains in Guiana reveal a high genetic diversity with host-dependant population structure. Environ Microbiol Rep. DOI: 10.1111/j.1758-2229.2012.00374.x.
-
(2012)
Environ Microbiol Rep
-
-
Lescat, M.1
Clermont, O.2
Woerther, P.L.3
Glodt, J.4
Dion, S.5
Skurnik, D.6
-
18
-
-
79955559191
-
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species
-
and () . : -.
-
Luo, C., Walk, S.T., Gordon, D.M., Feldgarden, M., Tiedje, J.M., and Konstantinidis, K.T. (2011) Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proc Natl Acad Sci USA 108: 7200-7205.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 7200-7205
-
-
Luo, C.1
Walk, S.T.2
Gordon, D.M.3
Feldgarden, M.4
Tiedje, J.M.5
Konstantinidis, K.T.6
-
19
-
-
0029831058
-
Confirmational identification of Escherichia coli, a comparison of genotypic and phenotypic assays for glutamate decarboxylase and beta-D-glucuronidase
-
and () . : -.
-
McDaniels, A.E., Rice, E.W., Reyes, A.L., Johnson, C.H., Haugland, R.A., and Stelma, G.N., Jr (1996) Confirmational identification of Escherichia coli, a comparison of genotypic and phenotypic assays for glutamate decarboxylase and beta-D-glucuronidase. Appl Environ Microbiol 62: 3350-3354.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 3350-3354
-
-
McDaniels, A.E.1
Rice, E.W.2
Reyes, A.L.3
Johnson, C.H.4
Haugland, R.A.5
Stelma Jr, G.N.6
-
20
-
-
79960931122
-
Unusual genotype of a uropathogenic Escherichia coli strain assigned to the B2 phylogenetic group
-
and () . : -.
-
Mendonça, N., Calhau, V., Lin, T., Boaventura, L., Ribeiro, G., and Da Silva, G.J. (2011) Unusual genotype of a uropathogenic Escherichia coli strain assigned to the B2 phylogenetic group. J Clin Microbiol 49: 3105-3106.
-
(2011)
J Clin Microbiol
, vol.49
, pp. 3105-3106
-
-
Mendonça, N.1
Calhau, V.2
Lin, T.3
Boaventura, L.4
Ribeiro, G.5
Da Silva, G.J.6
-
21
-
-
77954453169
-
Meningitis caused by Escherichia coli producing TEM-52 extended-spectrum beta-lactamase within an extensive outbreak in a neonatal ward: epidemiological investigation and characterization of the strain
-
Moissenet, D., Salauze, B., Clermont, O., Bingen, E., Arlet, G., Denamur, E., etal. (2010) Meningitis caused by Escherichia coli producing TEM-52 extended-spectrum beta-lactamase within an extensive outbreak in a neonatal ward: epidemiological investigation and characterization of the strain. J Clin Microbiol 48: 2459-2463.
-
(2010)
J Clin Microbiol
, vol.48
, pp. 2459-2463
-
-
Moissenet, D.1
Salauze, B.2
Clermont, O.3
Bingen, E.4
Arlet, G.5
Denamur, E.6
-
22
-
-
77950654681
-
Escherichia albertii in wild and domestic birds
-
Oaks, J.L., Besser, T.E., Walk, S.T., Gordon, D.M., Beckmen, K.B., Burek, K.A., etal. (2010) Escherichia albertii in wild and domestic birds. Emerg Infect Dis 16: 638-646.
-
(2010)
Emerg Infect Dis
, vol.16
, pp. 638-646
-
-
Oaks, J.L.1
Besser, T.E.2
Walk, S.T.3
Gordon, D.M.4
Beckmen, K.B.5
Burek, K.A.6
-
23
-
-
0032965099
-
The link between phylogeny and virulence in Escherichia coli extra-intestinal infection
-
Picard, B., Sevali Garcia, J., Gouriou, S., Duriez, P., Brahimi, N., Bingen, E., etal. (1999) The link between phylogeny and virulence in Escherichia coli extra-intestinal infection. Infect Immun 67: 546-553.
-
(1999)
Infect Immun
, vol.67
, pp. 546-553
-
-
Picard, B.1
Sevali Garcia, J.2
Gouriou, S.3
Duriez, P.4
Brahimi, N.5
Bingen, E.6
-
24
-
-
76949094947
-
The population genetics of commensal Escherichia coli
-
and () . : -.
-
Tenaillon, O., Skurnik, D., Picard, B., and Denamur, E. (2010) The population genetics of commensal Escherichia coli. Nat Rev Microbiol 8: 207-217.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 207-217
-
-
Tenaillon, O.1
Skurnik, D.2
Picard, B.3
Denamur, E.4
-
25
-
-
59249089471
-
Organised genome dynamics in Escherichia coli results in highly diverse adaptive paths
-
Touchon, M., Hoede, C., Tenaillon, O., Barbe, V., Baeriswyl, S., Bidet, P., etal. (2009) Organised genome dynamics in Escherichia coli results in highly diverse adaptive paths. PLoS Genet 5: e1000344.
-
(2009)
PLoS Genet
, vol.5
-
-
Touchon, M.1
Hoede, C.2
Tenaillon, O.3
Barbe, V.4
Baeriswyl, S.5
Bidet, P.6
-
26
-
-
70349944351
-
Cryptic lineages of the genus Escherichia
-
and () . : -.
-
Walk, S.T., Alm, E.W., Gordon, D.M., Ram, J.L., Toranzos, G.A., Tiedje, J.M., and Whittam, T.S. (2009) Cryptic lineages of the genus Escherichia. Appl Environ Microbiol 75: 6534-6544.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 6534-6544
-
-
Walk, S.T.1
Alm, E.W.2
Gordon, D.M.3
Ram, J.L.4
Toranzos, G.A.5
Tiedje, J.M.6
Whittam, T.S.7
-
27
-
-
0020992635
-
Geographic components of linkage disequilibrium in natural populations of Escherichia coli
-
and () . : -.
-
Whittam, T.S., Ochman, H., and Selander, R.K. (1983) Geographic components of linkage disequilibrium in natural populations of Escherichia coli. Mol Biol Evol 1: 67-83.
-
(1983)
Mol Biol Evol
, vol.1
, pp. 67-83
-
-
Whittam, T.S.1
Ochman, H.2
Selander, R.K.3
|