메뉴 건너뛰기




Volumn 112, Issue 41, 2015, Pages 12776-12781

New roles for DNA cytosine modification, eRNA, anchors, and superanchors in developing B cell progenitors

Author keywords

DNA modification; Immunoglobulin heavy chain locus; Nuclear architecture; Superanchor; Superinsulator

Indexed keywords

CYTOSINE; DNA; FORMALDEHYDE; IMMUNOGLOBULIN HEAVY CHAIN; NASCENT RNA; RNA; TRANSCRIPTION FACTOR CTCF; UNCLASSIFIED DRUG;

EID: 84944219958     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1512995112     Document Type: Article
Times cited : (53)

References (36)
  • 1
    • 20244387299 scopus 로고    scopus 로고
    • Identification of flt3+ lympho-myeloid stem cells lacking erythro-megakaryocytic potential a revised road map for adult blood lineage commitment
    • Adolfsson J, et al (2005) Identification of Flt3+ lympho-myeloid stem cells lacking erythro-megakaryocytic potential a revised road map for adult blood lineage commitment Cell 121(2):295-306.
    • (2005) Cell , vol.121 , Issue.2 , pp. 295-306
    • Adolfsson, J.1
  • 2
    • 70350093398 scopus 로고    scopus 로고
    • Ly6d marks the earliest stage of b-cell specification and identifies the branchpoint between b-cell and t-cell development
    • Inlay MA, et al (2009) Ly6d marks the earliest stage of B-cell specification and identifies the branchpoint between B-cell and T-cell development Genes Dev 23(20):2376-2381.
    • (2009) Genes Dev , vol.23 , Issue.20 , pp. 2376-2381
    • Inlay, M.A.1
  • 3
    • 34250212629 scopus 로고    scopus 로고
    • The transcriptional regulation of b cell lineage commitment
    • Nutt SL, Kee BL (2007) The transcriptional regulation of B cell lineage commitment Immunity 26(6):715-725.
    • (2007) Immunity , vol.26 , Issue.6 , pp. 715-725
    • Nutt, S.L.1    Kee, B.L.2
  • 4
    • 82555190932 scopus 로고    scopus 로고
    • Factors and networks that underpin early hematopoiesis
    • Mercer EM, Lin YC, Murre C (2011) Factors and networks that underpin early hematopoiesis Semin Immunol 23(5):317-325.
    • (2011) Semin Immunol , vol.23 , Issue.5 , pp. 317-325
    • Mercer, E.M.1    Lin, Y.C.2    Murre, C.3
  • 5
    • 80053131310 scopus 로고    scopus 로고
    • Multilineage priming of enhancer repertoires precedes commitment to the b and myeloid cell lineages in hematopoietic progenitors
    • Mercer EM, et al (2011) Multilineage priming of enhancer repertoires precedes commitment to the B and myeloid cell lineages in hematopoietic progenitors Immunity 35(3):413-425.
    • (2011) Immunity , vol.35 , Issue.3 , pp. 413-425
    • Mercer, E.M.1
  • 6
    • 80054805278 scopus 로고    scopus 로고
    • The transcription factors e2a and heb act in concert to induce the expression of foxo1 in the common lymphoid progenitor
    • Welinder E, et al (2011) The transcription factors E2A and HEB act in concert to induce the expression of FOXO1 in the common lymphoid progenitor Proc Natl Acad Sci USA 108(42):17402-17407.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.42 , pp. 17402-17407
    • Welinder, E.1
  • 7
    • 70350462285 scopus 로고    scopus 로고
    • Distinct roles for e12 and e47 in b cell specification and the sequential rearrangement of immunoglobulin light chain loci
    • Beck K, Peak MM, Ota T, Nemazee D, Murre C (2009) Distinct roles for E12 and E47 in B cell specification and the sequential rearrangement of immunoglobulin light chain loci J Exp Med 206(10):2271-2284.
    • (2009) J Exp Med , vol.206 , Issue.10 , pp. 2271-2284
    • Beck, K.1    Peak, M.M.2    Ota, T.3    Nemazee, D.4    Murre, C.5
  • 8
    • 64449088814 scopus 로고    scopus 로고
    • Stepwise activation of enhancer and promoter regions of the b cell commitment gene pax5 in early lymphopoiesis
    • Decker T, et al (2009) Stepwise activation of enhancer and promoter regions of the B cell commitment gene Pax5 in early lymphopoiesis Immunity 30(4):508-520.
    • (2009) Immunity , vol.30 , Issue.4 , pp. 508-520
    • Decker, T.1
  • 9
    • 84988228120 scopus 로고    scopus 로고
    • The chromatin remodeler brg1 activates enhancer repertoires to establish b cell identity and modulate cell growth
    • Bossen C, et al (2015) The chromatin remodeler Brg1 activates enhancer repertoires to establish B cell identity and modulate cell growth Nat Immunol 16(7):775-784.
    • (2015) Nat Immunol , vol.16 , Issue.7 , pp. 775-784
    • Bossen, C.1
  • 10
    • 84871390259 scopus 로고    scopus 로고
    • Positive intergenic feedback circuitry, involving ebf1 and foxo1, orchestrates b-cell fate
    • Mansson R, et al (2012) Positive intergenic feedback circuitry, involving EBF1 and FOXO1, orchestrates B-cell fate Proc Natl Acad Sci USA 109(51):21028-21033.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.51 , pp. 21028-21033
    • Mansson, R.1
  • 11
    • 84861912630 scopus 로고    scopus 로고
    • Programming of DNA methylation patterns
    • Cedar H, Bergman Y (2012) Programming of DNA methylation patterns Annu Rev Biochem 81:97-117.
    • (2012) Annu Rev Biochem , vol.81 , pp. 97-117
    • Cedar, H.1    Bergman, Y.2
  • 12
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • Bird A (2002) DNA methylation patterns and epigenetic memory Genes Dev 16(1):6-21.
    • (2002) Genes Dev , vol.16 , Issue.1 , pp. 6-21
    • Bird, A.1
  • 13
    • 84878292277 scopus 로고    scopus 로고
    • Transcriptional and epigenetic dynamics during specification of human embryonic stem cells
    • Gifford CA, et al (2013) Transcriptional and epigenetic dynamics during specification of human embryonic stem cells Cell 153(5):1149-1163.
    • (2013) Cell , vol.153 , Issue.5 , pp. 1149-1163
    • Gifford, C.A.1
  • 14
    • 84884688892 scopus 로고    scopus 로고
    • Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population
    • Schmitz RJ, et al (2013) Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population Genome Res 23(10):1663-1674.
    • (2013) Genome Res , vol.23 , Issue.10 , pp. 1663-1674
    • Schmitz, R.J.1
  • 15
    • 79956330964 scopus 로고    scopus 로고
    • Cpg islands and the regulation of transcription
    • Deaton AM, Bird A (2011) CpG islands and the regulation of transcription Genes Dev 25(10):1010-1022.
    • (2011) Genes Dev , vol.25 , Issue.10 , pp. 1010-1022
    • Deaton, A.M.1    Bird, A.2
  • 16
    • 70350028850 scopus 로고    scopus 로고
    • Mammalian cytosine methylation at a glance
    • Ooi SK, O'Donnell AH, Bestor TH (2009) Mammalian cytosine methylation at a glance J Cell Sci 122(Pt 16):2787-2791.
    • (2009) J Cell Sci , vol.122 , pp. 2787-2791
    • Ooi, S.K.1    O'Donnell, A.H.2    Bestor, T.H.3
  • 17
    • 66149146320 scopus 로고    scopus 로고
    • Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by mll partner tet1
    • Tahiliani M, et al (2009) Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1 Science 324(5929):930-935.
    • (2009) Science , vol.324 , Issue.5929 , pp. 930-935
    • Tahiliani, M.1
  • 18
    • 80052461558 scopus 로고    scopus 로고
    • Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
    • Ito S, et al (2011) Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine Science 333(6047):1300-1303.
    • (2011) Science , vol.333 , Issue.6047 , pp. 1300-1303
    • Ito, S.1
  • 19
    • 84892763878 scopus 로고    scopus 로고
    • Reversing DNA methylation: Mechanisms, genomics, and biological functions
    • Wu H, Zhang Y (2014) Reversing DNA methylation: Mechanisms, genomics, and biological functions Cell 156(1-2):45-68.
    • (2014) Cell , vol.156 , Issue.1-2 , pp. 45-68
    • Wu, H.1    Zhang, Y.2
  • 20
    • 0018796242 scopus 로고
    • Reaction of bisulfite with the 5-hydroxymethyl group in pyrimidines and in phage dnas
    • Hayatsu H, Shiragami M (1979) Reaction of bisulfite with the 5-hydroxymethyl group in pyrimidines and in phage DNAs Biochemistry 18(4):632-637.
    • (1979) Biochemistry , vol.18 , Issue.4 , pp. 632-637
    • Hayatsu, H.1    Shiragami, M.2
  • 21
    • 77749277177 scopus 로고    scopus 로고
    • The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing
    • Huang Y, et al (2010) The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing PLoS One 5(1):e8888.
    • (2010) PLoS One , vol.5 , Issue.1 , pp. e8888
    • Huang, Y.1
  • 22
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and b cell identities
    • Heinz S, et al (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities Mol Cell 38(4):576-589.
    • (2010) Mol Cell , vol.38 , Issue.4 , pp. 576-589
    • Heinz, S.1
  • 23
    • 77953763449 scopus 로고    scopus 로고
    • A global network of transcription factors, involving e2a, ebf1 and foxo1, that orchestrates b cell fate
    • Lin YC, et al (2010) A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate Nat Immunol 11(7):635-643.
    • (2010) Nat Immunol , vol.11 , Issue.7 , pp. 635-643
    • Lin, Y.C.1
  • 24
    • 84869502375 scopus 로고    scopus 로고
    • Global changes in the nuclear positioning of genes and intra-And interdomain genomic interactions that orchestrate b cell fate
    • Lin YC, et al (2012) Global changes in the nuclear positioning of genes and intra-And interdomain genomic interactions that orchestrate B cell fate Nat Immunol 13(12): 1196-1204.
    • (2012) Nat Immunol , vol.13 , Issue.12 , pp. 1196-1204
    • Lin, Y.C.1
  • 25
    • 84919949716 scopus 로고    scopus 로고
    • A 3d map of the human genome at kilobase resolution reveals principles of chromatin looping
    • Rao SS, et al (2014) A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping Cell 159(7):1665-1680.
    • (2014) Cell , vol.159 , Issue.7 , pp. 1665-1680
    • Rao, S.S.1
  • 26
    • 84876216563 scopus 로고    scopus 로고
    • Master transcription factors and mediator establish superenhancers at key cell identity genes
    • Whyte WA, et al (2013) Master transcription factors and mediator establish superenhancers at key cell identity genes Cell 153(2):307-319.
    • (2013) Cell , vol.153 , Issue.2 , pp. 307-319
    • Whyte, W.A.1
  • 27
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon JR, et al (2012) Topological domains in mammalian genomes identified by analysis of chromatin interactions Nature 485(7398):376-380.
    • (2012) Nature , vol.485 , Issue.7398 , pp. 376-380
    • Dixon, J.R.1
  • 28
    • 84922620709 scopus 로고    scopus 로고
    • Ctcf-binding elements 1 and 2 in the igh intergenic control region cooperatively regulate v(d j recombination
    • Lin SG, Guo C, Su A, Zhang Y, Alt FW (2015) CTCF-binding elements 1 and 2 in the Igh intergenic control region cooperatively regulate V(D)J recombination Proc Natl Acad Sci USA 112(6):1815-1820.
    • (2015) Proc Natl Acad Sci USA , vol.112 , Issue.6 , pp. 1815-1820
    • Lin, S.G.1    Guo, C.2    Su, A.3    Zhang, Y.4    Alt, F.W.5
  • 29
    • 84862778059 scopus 로고    scopus 로고
    • Spatial organization of the mouse genome and its role in recurrent chromosomal translocations
    • Zhang Y, et al (2012) Spatial organization of the mouse genome and its role in recurrent chromosomal translocations Cell 148(5):908-921.
    • (2012) Cell , vol.148 , Issue.5 , pp. 908-921
    • Zhang, Y.1
  • 30
    • 84893373754 scopus 로고    scopus 로고
    • Distinct roles of the methylcytosine oxidases tet1 and tet2 in mouse embryonic stem cells
    • Huang Y, et al (2014) Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells Proc Natl Acad Sci USA 111(4):1361-1366.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.4 , pp. 1361-1366
    • Huang, Y.1
  • 31
    • 84899978161 scopus 로고    scopus 로고
    • The establishment of b versus t cell identity
    • Miyazaki K, Miyazaki M, Murre C (2014) The establishment of B versus T cell identity Trends Immunol 35(5):205-210.
    • (2014) Trends Immunol , vol.35 , Issue.5 , pp. 205-210
    • Miyazaki, K.1    Miyazaki, M.2    Murre, C.3
  • 32
    • 45449089640 scopus 로고    scopus 로고
    • Choreography of ig allelic exclusion
    • Cedar H, Bergman Y (2008) Choreography of Ig allelic exclusion Curr Opin Immunol 20(3):308-317.
    • (2008) Curr Opin Immunol , vol.20 , Issue.3 , pp. 308-317
    • Cedar, H.1    Bergman, Y.2
  • 33
    • 68049086918 scopus 로고    scopus 로고
    • Chromatin architecture and the generation of antigen receptor diversity
    • Jhunjhunwala S, van Zelm MC, Peak MM, Murre C (2009) Chromatin architecture and the generation of antigen receptor diversity Cell 138(3):435-448.
    • (2009) Cell , vol.138 , Issue.3 , pp. 435-448
    • Jhunjhunwala, S.1    Van Zelm, M.C.2    Peak, M.M.3    Murre, C.4
  • 34
    • 84859383686 scopus 로고    scopus 로고
    • Chromatin topology and the regulation of antigen receptor assembly
    • Bossen C, Mansson R, Murre C (2012) Chromatin topology and the regulation of antigen receptor assembly Annu Rev Immunol 30:337-356.
    • (2012) Annu Rev Immunol , vol.30 , pp. 337-356
    • Bossen, C.1    Mansson, R.2    Murre, C.3
  • 35
    • 84904567038 scopus 로고    scopus 로고
    • 3D-Trajectories adopted by coding and regulatory DNA elements: First-passage times for genomic interactions
    • Lucas JS, Zhang Y, Dudko OK, Murre C (2014) 3D-Trajectories adopted by coding and regulatory DNA elements: First-passage times for genomic interactions Cell 158:339-352.
    • (2014) Cell , vol.158 , pp. 339-352
    • Lucas, J.S.1    Zhang, Y.2    Dudko, O.K.3    Murre, C.4
  • 36
    • 84922435519 scopus 로고    scopus 로고
    • Inflammation-sensitive super enhancers form domains of coordinately regulated enhancer rnas
    • Hah N, et al (2015) Inflammation-sensitive super enhancers form domains of coordinately regulated enhancer RNAs Proc Natl Acad Sci USA 112(3):E297-E302.
    • (2015) Proc Natl Acad Sci USA , vol.112 , Issue.3 , pp. E297-E302
    • Hah, N.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.