Halomonas heilongjiangensis sp. Nov., a novel moderately halophilic bacterium isolated from saline and alkaline soil

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 108, Issue 2, 2015, Pages 403-413

  Dou, Guiming ^a   He, Wei ^a   Liu, Hongcan ^b   Ma, Yuchao ^a  

^a BEIJING FORESTRY UNIVERSITY   (China)

^b INSTITUTE OF MICROBIOLOGY   (China)

Author keywords

Halomonas heilongjiangensis sp. nov; Lindian county; Polyphasic taxonomy; Saline and alkaline soil

Indexed keywords

AMOXICILLIN; AMPICILLIN; CHLORAMPHENICOL; ERYTHROMYCIN; FATTY ACID; KANAMYCIN; NALIDIXIC ACID; RIFAMPICIN; SODIUM CHLORIDE; STREPTOMYCIN; UBIQUINONE; BACTERIAL DNA; QUINONE DERIVATIVE; RIBOSOME DNA; RNA 16S;

ALKALINE SOIL; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM COLONY; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHINA; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DNA DNA HYBRIDIZATION; DRUG SENSITIVITY; GENE SEQUENCE; HALOMONAS; HALOMONAS CAMPANIENSIS; HALOMONAS DESIDERATA; HALOMONAS HEILONGJIANGENSIS; HALOMONAS KENYENSIS; HALOMONAS VENTOSAE; NONHUMAN; PH; PHYLOGENY; PRIORITY JOURNAL; SOIL; SPECIES COMPARISON; TAXONOMIC RANK; TEMPERATURE; AEROBIC METABOLISM; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; CYTOSOL; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; LOCOMOTION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHYSIOLOGY;

AEROBIOSIS; BASE COMPOSITION; CHINA; CLUSTER ANALYSIS; CYTOSOL; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; HALOMONAS; HYDROGEN-ION CONCENTRATION; LOCOMOTION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SOIL MICROBIOLOGY; TEMPERATURE;

EID: 84943450512     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-015-0493-4     Document Type: Article

References (60)

1. Arahal DR, Vreeland RH, Litchfield CD, Mormile MR, Tindall BJ, Oren A, Bejar V, Quesada E, Ventosa A (2007) Recommended minimal standards for describing new taxa of the family. Int J Syst Evol Microbiol 57:2436–2446
2. Berendes F, Gottschalk G, Heine-Dobbernack E, Moore ERB, Tindall BJ (1996) Halomonas desiderata sp. nov. a new alkaliphilic, halotolerant and denitrifying bacterium isolated from a municipal sewage works. Syst Appl Microbiol 19:158–167
3. Boltyanskaya YV, Kevbrin VV, Lysenko AM, Kolganova TV, Tourova TP, Osipov GA, Zhilina TN (2007) Halomonas mongoliensis sp. nov. and Halomonas kenyensis sp. nov. new haloalkaliphilic denitrifiers capable of N2O reduction, isolated from soda lakes. Microbiology 76:739–747
4. Cerny G (1978) Studies on the aminopeptidase test for precipitating bacterial exopolysaccharides. Biotechnol Tech 10:341–344
5. Chen YG, Zhang YQ, Huang HY, Klenk HP, Tang SK, Huang K, Chen QH, Cui XL, Li WJ (2009) Halomonas zhanjiangensis sp. nov. a halophilic bacterium isolated from a sea urchin. Int J Syst Evol Microbiol 59:2888–2893
6. Chen C, Shi R, Liu BB, Zhang YJ, Sun HZ, Li CT, Tang SK, Zhang LL, Li WJ (2011) Halomonas qijiaojingensis sp. nov. and Halomonas flava sp. nov. two moderately halophilic bacteria isolated from a salt lake. Antonie Van Leeuwenhoek 100:365–373
7. Collins MD (1985) Isoprenoid quinone analysis in classification and identification. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics. Academic Press, London, pp 267–287
8. DeLey J, Caltoir H, Reeynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rate. Eur J Biochem 12:133–142
9. Dong XZ, Cai MY (2001) Determinative manual for routine bacteriology. Scientific Press, Beijing
10. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
11. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416
12. Franzmann PD, Burton HR, McMeekin TA (1987) Halomonas subglaciescola, a new species of halotolerant bacteria isolated from Antarctica. Int J Syst Bacteriol 37:27–34
13. Franzmann PD, Wehmeyer U, Stackebrandt E (1988) Halomonadaceae fam. nov. a new family of the class Proteobacteria to accommodate the genera Halomonas and Deleya. Syst Appl Microbiol 11:16–19
14. Garcia MT, Mellado E, Ostos JC, Ventosa A (2004) Halomonas organivorans sp. nov. a moderate halophile able to degrade aromatic compounds. Int J Syst Evol Microbiol 54:1723–1728
15. Gonzalez-Domenech CM, Bejar V, Martinez-Checa F, Quesada E (2008a) Halomonas nitroreducens sp. nov. a novel nitrate- and nitrite-reducing species. Int J Syst Evol Microbiol 58:872–876
16. Gonzalez-Domenech CM, Martinez-Checa F, Quesada E, Bejar V (2008b) Halomonas cerina sp. nov. a moderately halophilic, denitrifying, exopolysaccharide-producing bacterium. Int J Syst Evol Microbiol 58:803–809
17. Guan TW, Xiao J, Zhao K, Luo XX, Zhang XP, Zhang LL (2010) Halomonas xinjiangensis sp. nov. a halotolerant bacterium isolated from a salt lake. Int J Syst Evol Microbiol 60:349–352
18. Guzman D, Quillaguaman J, Munoz M, Hatti-Kaul R (2010) Halomonas andesensis sp. nov. a moderate halophile isolated from the saline lake Laguna Colorada in Bolivia. Int J Syst Evol Microbiol 60:749–753
19. Hugh R, Leifson E (1953) The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram negative bacteria. J Bacteriol 66:24–26
20. Kaye JZ, Marquez MC, Ventosa A, Baross JA (2004) Halomonas neptunia sp. nov. Halomonas sulfidaeris sp. nov. Halomonas axialensis sp. nov. and Halomonas hydrothermalis sp. nov.: halophilic bacteria isolated from deep-sea hydrothermal-vent environments. Int J Syst Evol Microbiol 54:499–511
21. Kim KK, Jin L, Yang HC, Lee ST (2007) Halomonas gomseomensis sp. nov. Halomonas janggokensis sp. nov. Halomonas salaria sp. nov. and Halomonas denitrificans sp. nov. moderately halophilic bacteria isolated from saline water. Int J Syst Evol Microbiol 57:675–681
22. Kim KK, Lee KC, Oh HM, Lee JS (2010a) Halomonas stevensii sp. nov. Halomonas hamiltonii sp. nov. and Halomonas johnsoniae sp. nov. isolated from a renal care centre. Int J Syst Evol Microbiol 60:369–377
23. Kim MS, Roh SW, Bae JW (2010b) Halomonas jeotgali sp. nov. a new moderate halophilic bacterium isolated from a traditional fermented seafood. J Microbiol 48:404–410
24. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721
25. Komagata K, Suzuki K (1987) Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161–207
26. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244–1245
27. Lanyi B (1988) Classical and rapid identification methods for medically important bacteria. In: Colwell RR, Grigorova R (eds) Methods in microbiology. Academic press, New York, pp 1–67
28. Leifson E (1960) Atlas of bacterial flagellation. Academic Press, London
29. Li HB, Zhang LP, Chen SF (2008) Halomonas korlensis sp. nov. a moderately halophilic, denitrifying bacterium isolated from saline and alkaline soil. Int J Syst Evol Microbiol 58:2582–2588
30. Llamas I, Bejar V, Martinez-Checa F, Martinez-Canovas MJ, Molina I, Quesada E (2011) Halomonas stenophila sp. nov. a halophilic bacterium that produces sulphate exopolysaccharides with biological activity. Int J Syst Evol Microbiol 61:2508–2514
31. Marmur J (1961) A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3:208–218
32. Marmur J, Doty P (1962) Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5:109–118
33. Martinez-Canovas MJ, Bejar V, Martinez-Checa F, Quesada E (2004) Halomonas anticariensis sp. nov. from Fuente de Piedra, a saline-wetland wildfowl reserve in Ma´laga, southern Spain. Int J Syst Evol Microbiol 54:1329–1332
34. Martinez-Checa F, Bejar V, Martinez-Canovas MJ, Llamas I, Quesada E (2005) Halomonas almeriensis sp. nov. a moderately halophilic, exopolysaccharide-producing bacterium from Cabo de Gata, Almerı´a, south-east Spain. Int J Syst Evol Microbiol 55:2007–2011
35. Mata JA, Martinez-Canovas J, Quesada E, Bejar V (2002) A detailed phenotypic characterization of the type strains of Halomonas species. Syst Appl Microbiol 25:360–375
36. Minnikin D, O’Donnell A, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett J (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241
37. Poli A, Esposito E, Orlando P, Lama L, Giordano A, De Appolonia F, Nicolaus B, Gambacorta A (2007) Halomonas alkaliantarctica sp. nov. isolated from saline lake Cape Russell in Antarctica, an alkalophilic moderately halophilic, exopolysaccharide-producing bacterium. Syst Appl Microbiol 30:31–38
38. Poli A, Nicolaus B, Denizci AA, Yavuzturk B, Kazan D (2013) Halomonas smyrnensis sp. nov. a moderately halophilic, exopolysaccharide-producing bacterium. Int J Syst Evol Microbiol 63:10–18
39. Quesada E, Ventosa A, Rodriguez-Valera F, Megias L, Ramos-Cormenzana A (1983) Numerical taxonomy of moderately halophilic Gram-negative bacteria form hypersaline soils. J Gen Mcrobiol 129:2649–2657
40. Romanenko LA, Schumann P, Rohde M, Mikhailov VV, Stackebrandt E (2002) Halomonas halocynthiae sp. nov. isolated from the marine ascidian Halocynthia aurantium. Int J Syst Evol Microbiol 52:1767–1772
41. Romano I, Lama L, Orlando P, Nicolaus B, Giordano A, Gambacorta A (2007) Halomonas sinaiensis sp. nov. a novel halophilic bacterium isolated from a salt lake inside Ras Muhammad Park, Egypt. Extremophiles 11:789–796
42. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic tree. Mol Biol Evol 4:406–425
43. Sanchez-Porro C, Martin S, Mellado E, Ventosa A (2003) Diversity of moderately halophilic bacteria producing extracellular hydrolytic enzymes. J Appl Microbiol 94:295–300
44. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids, MIDI technical note 101. MIDI Inc, Newark
45. Soto-Ramirez N, Sanchez-Porro C, Rosas S, Gonzalez W, Quinones M, Ventosa A, Montalvo-Rodroiguez R (2007) Halomonas avicenniae sp. nov. isolated from the salty leaves of the black mangrove Avicennia germinans in Puerto Rico. Int J Syst Evol Microbiol 57:900–905
46. Stackebrandt E, Ebers J (2006) Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33:152–155
47. Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA–DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849
48. Tamura K, Nei M(1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–526
49. Tamura K, Peterson D, Peterson N, Stecher G, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
50. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882
51. Tindall BJ, Rossello-Mora R, Busse HJ, Ludwig W, Kampfer P (2010) Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60:249–266
52. Vreeland RH, Litchfield CD, Martin EL, Elliot E (1980) Halomonas elongata, a new genus and species of extremely salttolerant bacteria. Int J Syst Bacteriol 30:485–495
53. Wang YN, Cai H, Chi CQ, Lu AH, Lin XG, Jiang ZF, Wu XL (2007a) Halomonas shengliensis sp. nov. a moderately halophilic, denitrifying, crude-oil-utilizing bacterium. Int J Syst Evol Microbiol 57:1222–1226
54. Wang YN, Cai H, Yu SL, Wang ZY, Liu J, Wu XL (2007b) Halomonas gudaonensis sp. nov. isolated from a saline soil contaminated by crude oil. Int J Syst Evol Microbiol 57:911–915
55. Wu G, Wu XQ, Wang YN, Chi CQ, Tang YQ, Kida K, Wu XL, Luan ZK (2008) Halomonas daqingensis sp. nov. a moderately halophilic bacterium isolated from an oilfield soil. Int J Syst Evol Microbiol 58:2859–2865
56. Xu P, Li WJ, Tang SK, Zhang YQ, Chen GZ, Chen HH, Jiang CL (2005) Naxibacter alkalitolerans gen. nov. sp. nov. a novel member of the family ‘Oxalobacteraceae’ isolated from China. Int J Syst Evol Microbiol 55:1149–1153
57. Yanagi M, Yamasato K (1993) Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer. FEMS Microbiol Lett 107:115–120
58. Yoon JH, Lee KC, Kho YH, Kang KH, Kim CJ, Park YH (2002) Halomonas alimentaria sp. nov. isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 52:123–130
59. Zhao B, Wang H, Mao X, Li R, Zhang YJ, Tang S, Li WJ (2012) Halomonas xianhensis sp. nov. a moderately halophilic bacterium isolated from a saline soil contaminated by crude oil. Int J Syst Evol Microbiol 62:173–178
60. Zhou XH, Wang Y, Wu M (2007) Isolation and exopolysaccharide screening of halophiles from Zhoushan Islands. J Zhejiang Uni 34:335–339