Halomonas gomseomensis sp. nov., Halomonas janggokensis sp. nov., Halomonas salaria sp. nov. and Halomonas denitrificans sp. nov., moderately halophilic bacteria isolated from saline water

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 4, 2007, Pages 675-681

  Kim, Kwang Kyu ^a   Jin, Long ^a   Yang, Hee Chan ^a   Lee, Sung Taik ^a  

^a Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; RNA 16S; SODIUM CHLORIDE; UBIQUINONE; WATER;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENUS; HALOMONAS; HALOMONAS DENITRIFICANS; HALOMONAS GOMSEOMENSIS; HALOMONAS JANGGOKENSIS; HALOMONAS SALARIA; HALOPHILIC BACTERIUM; KOREA; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; TAXONOMY;

DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; HALOMONAS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SODIUM CHLORIDE; WATER MICROBIOLOGY;

HALOMONAS; NEGIBACTERIA; SALARIA;

EID: 34248147967     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64767-0     Document Type: Article

References (30)

1. Arahal, D. R., Garcia, M. T., Ludwig, W., Schleifer, K. H. & Ventosa, A. (2001). Transfer of Halomonas canadensis and Halomonas israelensis to the genus Chromohalobacter as Chromohalobacter canadensis comb. nov. and Chromohalobacter israelensis comb. nov. Int J Syst Evol Microbiol 51, 1443-1448.
2. Arahal, D. R., Castillo, A. M., Ludwig, W., Schleifer, K. H. & Ventosa, A. (2002a). Proposal of Cobetia marina gen. nov., comb. nov., within the family Halomonadaceae, to include the species Halomonas marina. Syst Appl Microbiol 25, 207-211.
3. Arahal, D. R., Ludwig, W., Schleifer, K. H. & Ventosa, A. (2002b . Phylogeny of the family Halomonadaceae based on 23S and 16S rDNA sequence analyses. Int J Syst Evol Microbiol 52, 241-249.
4. Bouchotroch, S., Quesada, E., del Moral, A., Llamas, I. & Béjar, V. (2001). Halomonas maura sp. nov., a novel moderately halophilic, exopolysaccharide-producing bacterium. Int J Syst Evol Microbiol 51, 1625-1632.
5. Dobson, S. J. & Franzmann, P. D. (1996). Unification of the genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the species Paracoccus halodenitrificans (Robinson and Gibbons 1952) into a single genus, Halomonas, and placement of the genus Zymobacter in the family Halomonadaceae. Int J Syst Bacteriol 46, 550-558.
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
8. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
9. Franzmann, P. D., Wehmeyer, U. & Stackebrandt, E. (1988). Halomonadaceae fam. nov., a new family of the class Proteobacteria to accommodate the genera Halomonas and Deleya. Syst Appl Microbiol 11, 16-19.
10. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
11. Hall, T. A. (1999). BIOEDIT: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
12. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
13. Kaye, J. Z., Márquez, M. C., Ventosa, A. & Baross, J. A. (2004) Halomonas neptunia sp. nov., Halomonas sulfidaeris sp. nov., Halomonas axialensis sp. nov. and Halomonas hydrothermalis sp. nov.: Halophilic bacteria isolated from deep-sea hydrothermal-vent environments. Int J Syst Evol Microbiol 54 499-511.
14. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
15. Klatte, S., Rainey, F. A. & Kroppenstedt, R. M. (1994). Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amarae comb. nov. Int J Syst Bacteriol 44, 769-773.
16. Kumar, S., Tamura, K., Jakobsen, I.-B. & Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
17. Lee, J.-C., Jeon, C. O., Lim, J.-M., Lee, S.-M., Lee, J.-M., Song, S.-M., Park, D.-J., Li, W.-J. & Kim, C.-J. (2005). Halomonas taeanensis sp. nov., a novel moderately halophilic bacterium isolated from a solar saltern in Korea. Int J Syst Evol Microbiol 55, 2027-2032.
18. Martínez-Cánovas, M. J., Quesada, E., Llamas, I. & Béjar, V. (2004a). Halomonas ventosae sp. nov., a moderately halophilic, denitrifying, exopolysaccharide-producing bacterium. Int J Syst Evol Microbiol 54, 733-737.
19. Martínez-Cánovas, M. J., Béjar, V., Martínez-Checa, F. & Quesada, E. (2004b). Halomonas anticariensis sp. nov., from Fuente de Piedra, a saline-wetland wildfowl reserve in Málaga, southern Spain. Int J Syst Evol Microbiol 54, 1329-1332.
20. Martínez-Checa, F., Béjar, V., Martínez-Cánovas, M. J., Llamas, I. & Quesada, E. (2005). Halomonas almeriensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium from Cabo de Gata, Almería, south-east Spain. Int J Syst Evol Microbiol 55, 2007-2011.
21. Mellado, E., Moore, E. R. B., Nieto, J. J. & Ventosa, A. (1995 . Phylogenetic inferences and taxonomic consequences of 16S ribosomal DNA sequence comparison of Chromohalobacter marismortui, Volcaniella eurihalina, and Deleya salina and reclassification of V. eurihalina as Halomonas eurihalina comb. nov. Int J Syst Bacteriol 45, 712-716.
22. Peçonek, J., Gruber, C., Gallego, V., Ventosa, A., Busse, H.-J., Kämpfer, P., Radax, C. & Stan-Lotter, H. (2006). Reclassification of Pseudomonas beijerinckii Hof 1935 as Chromohalobacter beijerinckii comb. nov., and emended description of the species. Int J Syst Evol Microbiol 56, 1953-1957.
23. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a district actinomycete lineage; proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
24. Romano, I., Giordano, A., Lama, L., Nicolaus, B. & Gambacorta, A. (2005). Halomonas campaniensis sp. nov., a haloalkaliphilic bacterium isolated from a mineral pool of Campania Region, Italy. Syst Appl Microbiol 28, 610-618.
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method; a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 406-425.
26. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. Technical Note 101. Newark, DE: MIDI Inc.
27. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phased high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
28. Tarrand, J. J. & Groschel, D. H. M. (1982). Rapid, modified oxidase test for oxidase-variable bacterial isolates. J Clin Microbiol 16, 772-774.
29. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL x windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
30. Tindall, B. J. (1990). A comparative study of the lipid composition of Halobacterium saccarovorum from various sources. Syst Appl Microbiol 13, 128-130.