Halomonas daqingensis sp. nov., a moderately halophilic bacterium isolated from an oilfield soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 12, 2008, Pages 2859-2865

  Wu, Gang ^a   Wu, Xiao Qing ^a   Wang, Ya Nan ^b   Chi, Chang Qiao ^b   Tang, Yue Qin ^b   Kida, Kenji ^c   Wu, Xiao Lei ^b   Luan, Zhao Kun ^a  

^a RESEARCH CENTER FOR ECO ENVIRONMENTAL SCIENCES   (China)

^b PEKING UNIVERSITY   (China)

^c KUMAMOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; DNA C; DNA PRIMASE; FATTY ACID; ISOPRENE; PETROLEUM; RNA 16S; SODIUM CHLORIDE; UBIQUINONE;

ARTICLE; BACILLUS (ROD SHAPED BACTERIUM); BACTERIAL FLAGELLUM; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHINA; CONTROLLED STUDY; DNA CONTENT; DNA DNA HYBRIDIZATION; GAMMAPROTEOBACTERIA; GENETIC SIMILARITY; GRAM NEGATIVE BACTERIUM; HALOMONAS; HALOMONAS CAMPISALIS; HALOMONAS DAQINGENSIS; HALOMONAS DESIDERATA; HALOMONAS GUDAONENSIS; HALOPHILIC BACTERIUM; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; SOIL MICROFLORA; SPECIES COMPARISON; TYPE STRAIN; CLASSIFICATION; GENETICS; MICROBIOLOGY; MOLECULAR GENETICS; PHYSIOLOGY; SPECIES DIFFERENCE; TRANSMISSION ELECTRON MICROSCOPY; ULTRASTRUCTURE;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; HALOMONAS; HALOMONAS CAMPISALIS; HALOMONAS DESIDERATA; NEGIBACTERIA;

FATTY ACIDS; HALOMONAS; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; PETROLEUM; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

EID: 58949085993     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65746-0     Document Type: Article

References (31)

1. Barritt, M. M. (1936). The intensification of the Voges-Proskauer reaction by the addition of α-naphthol. J Pathol Bacteriol 42, 441-454.
2. Berendes, F., Gottschalk, G., Heine-Dobbernack, E., Moore, E. R. B. & Tindall, B. J. (1996). Halomonas desiderata sp. nov., a new alkaliphilic, halotolerant and denitrifying bacterium isolated from a municipal sewage works. Syst Appl Microbiol 19, 158-167.
3. Bouchotroch, S., Quesada, E., Del Moral, A., Llamas, I. & Béjar, V. (2001). Halomonas maura sp. nov., a novel moderately halophilic, exopolysaccharide-producing bacterium. Int J Syst Evol Microbiol 51, 1625-1632.
4. Clarke, P. H. (1953). Hydrogen sulphide production by bacteria. J Gen Microbiol 8, 397-407.
5. Collins, M. D., Goodfellow, M. & Minnikin, D. E. (1980). Fatty acid isoprenoid quinine and polar lipid composition in the classification of Curtobacterium and related taxa. J Gen Microbiol 118, 29-37.
6. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
7. Dobson, S. J. & Franzmann, P. D. (1996). Unification of the genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the species Paracoccus halodenitrificans (Robinson and Gibbons 1952) into a single genus, Halomonas, and placement of the genus Zymobacter in the family Halomonadaceae. Int J Syst Bacteriol 46, 550-558.
8. Dong, X.-Z. & Cai, M.-Y. (2001). Manual of Determinative Bacteriology, pp. 370. Peking: Science Publishing Press.
9. Eguchi, M., Nishikawa, T. & Macdonald, K. (1996). Responses to stress and nutrient availability by the marine ultramicrobacterium Sphingomonas sp. strain RB2256. Appl Environ Microbiol 62, 1287-1294.
10. Embley, T. M. (1991). The linear PCR reaction: a simple and robust method for sequencing amplified rRNA genes. Lett Appl Microbiol 13, 171-174.
11. Franzmann, P. D. & Tindall, B. J. (1990). A chemotaxonomic study of members of the family Halomonadaceae. Syst Appl Microbiol 13, 142-147.
12. García, M. T., Mellado, E., Ostos, J. C. & Ventosa, A. (2004). Halomonas organivorans sp. nov., a moderate halophile able to degrade aromatic compounds. Int J Syst Evol Microbiol 54, 1723-1728.
13. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
14. Johnson, J. L. (1994). Similarity analysis of DNAs. In Methods for General and Molecular Bacteriology, pp. 655-681. Edited by P. E. Gerhardt, R. G. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology Press.
15. Kates, M. (1986). Techniques of Lipidology, 2nd edn. Amsterdam: Elsevier.
16. Kaye, J. Z., Márquez, M. C., Ventosa, A. & Baross, J. A. (2004). Halomonas neptunia sp. nov., Halomonas sulfidaeris sp. nov., Halomonas axialensis sp. nov. and Halomonas hydrothermalis sp. nov.: halophilic bacteria isolated from deep-sea hydrothermal-vent environments. Int J Syst Evol Microbiol 54, 499-511.
17. Komagata, K. & Suzuki, K. (1987). Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
18. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment briefings. Bioinformatics 5, 150-163.
19. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
20. Martínez-Cánovas, M. J., Quesada, E., Llamas, I. & Béjar, V. (2004a). Halomonas ventosa sp. nov., a moderately halophilic, denitrifying, exopolysaccharide-producing bacterium. Int J Syst Evol Microbiol 54, 733-737.
21. Martínez-Cánovas, M. J., Béjar, V., Martínez-Checa, F. & Quesada, E. (2004b). Halomonas anticariensis sp. nov., from Fuente de Piedra, a saline-wetland wildfowl reserve in Málaga, southern Spain. Int J Syst Evol Microbiol 54, 1329-1332.
22. Martínez-Cánovas, M. J., Quesada, E., Martínez-Checa, F. & Béjar, V. (2004c). A taxonomic study to establish the relationship between exopolysaccharide-producing bacterial strains living in diverse hypersaline habitats. Curr Microbiol 48, 348-353.
23. Martínez-Checa, F., Béjar, V., Martínez-Cánovas, M. J., Llamas, I. & Quesada, E. (2005). Halomonas almeriensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium from Cabo de Gata, Almería, south-east Spain. Int J Syst Evol Microbiol 55, 2007-2011.
24. Mata, J. A., Martínez-Cánovas, J., Quesada, E. & Béjar, V. (2002). A detailed phenotypic characterisation of the type strains of Halomonas species. Syst Appl Microbiol 25, 360-375.
25. Mormile, M. R., Romine, M. F., Garcia, M. T., Ventosa, A., Bailey, T. J. & Peyton, B. M. (1999). Halomonas campisalis sp. nov., a denitrifying, moderately haloalkaliphilic bacterium. Syst Appl Microbiol 22, 551-558.
26. Romano, I., Nicolaus, B., Lama, L., Manca, M. C. & Gambacorta, A. (1996). Characterization of a haloalkalophilic strictly aerobic bacterium, isolated from Pantelleria Island. Syst Appl Microbiol 19, 326-333.
27. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
28. Vreeland, R. H., Litchfield, C. D., Martin, E. L. & Elliot, E. (1980). Halomonas elongata, a new genus and species of extremely salt-tolerant bacteria. Int J Syst Bacteriol 30, 485-495.
29. Wang, Y.-N., Cai, H., Yu, S.-L., Wang, Z.-Y. & Wu, X.-L. (2007). Halomonas gudaonensis sp. nov., isolated from a saline soil contaminated by crude oil. Int J Syst Evol Microbiol 57, 911-915.
30. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J. (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.
31. Zumft, W. G. (1992). The denitrifying bacteria. In The Prokaryotes. A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Application, pp. 554-582. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer Verlag.