Halomonas xianhensis sp. nov., a moderately halophilic bacterium isolated from a saline soil contaminated with crude oil

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 1, 2011, Pages 173-178

  Zhao, Baisuo ^a   Wang, Hui ^a   Mao, Xinwei ^a   Li, Ruirui ^a   Zhang, Yun Jiao ^b   Tang, Shukun ^b   Li, Wen Jun ^b  

^a TSINGHUA UNIVERSITY   (China)

^b YUNNAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FATTY ACID; GENOMIC DNA; PETROLEUM; RNA 16S; SODIUM CHLORIDE; UBIQUINONE;

ARTICLE; BACTERIAL COLONIZATION; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHINA; CONTROLLED STUDY; GAMMAPROTEOBACTERIA; GENE SEQUENCE; HALOMONAS; HALOMONAS XIANHENSIS; HALOPHILIC BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SOIL POLLUTION;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; HALOMONAS; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; PETROLEUM; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SALTS; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SOIL POLLUTANTS; TEMPERATURE;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; HALOMONAS; HALOMONAS MURALIS; HALOMONAS PANTELLERIENSIS; NEGIBACTERIA;

EID: 84862925939     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.025627-0     Document Type: Article

References (43)

1. Acinas, S. G., Antón, J. & Rodríguez-Valera, F. (1999). Diversity of free-living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA. Appl Environ Microbiol 65, 514-522.
2. Arahal, D. R., Ludwig, W., Schleifer, K. H. & Ventosa, A. (2002). Phylogeny of the family Halomonadaceae based on 23S and 165 rDNA sequence analyses. Int J Syst Evol Microbiol 52, 241-249.
3. Arahal, D. R., Vreeland, R. H., Litchfield, C. D., Mormile, M. R., Tindall, B. J., Oren, A., Bejar, V., Quesada, E. & Ventosa, A. (2007). Recommended minimal standards for describing new taxa of the family Halomonadaceae. Int J Syst Evol Microbiol 57, 2436-2446.
4. Arenas, M., Bañón, P. I., Copa-Patiño, J. L., Sánchez-Porro, C., Ventosa, A. & Soliveri, J. (2009). Halomonas ilicicola sp. nov., a moderately halophilic bacterium isolated from a saltern. Int J Syst Evol Microbiol 59, 578-582.
5. Baron, E. J. & Finegold, S. M. (1990). Bailey and Scott's Diagnostic Microbiology, 8th edn. St Louis: Mosby.
6. Cabrera, A., Aguilera, M., Fuentes, S., Incerti, C., Russell, N. J., Ramos-Cormenzana, A. & Monteoliva-Sánchez, M. (2007). Halomonas indalinina sp. nov., a moderately halophilic bacterium isolated from a solar saltern in Cabo de Gata, Almeria, southern Spain. Int J Syst Evol Microbiol 57, 376-380.
7. Callies, E. & Mannheim, W. (1978). Classification of the Flavobacterium-Cytophaga complex on the basis of respiratory quinones and fumarate respiration. Int J Syst Bacteriol 28, 14-19.
8. de la Haba, R. R., Arahal, D. R., Márquez, M. C. & Ventosa, A. (2010). Phylogenetic relationships within the family Halomonadaceae based on comparative 23S and 16S rRNA gene sequence analysis. Int J Syst Evol Microbiol 60, 737-748.
9. Dobson, S. J. & Franzmann, P. D. (1996). Unification of the genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the species Paracoccus halodenitrificans (Robinson and Gibbons 1952) in to a single genus, Halomonas, and placement of the genus Zymobacter in the family Halomonadaceae. Int J Syst Bacteriol 46, 550-558.
10. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
11. Franzmann, P. D., Wehmeyer, U. & Stackebrandt, E. (1988). Halomonadaceae fam. nov., a new family of the class Proteobacteria to accommodate the genera Halomonas and Deleya. Syst Appl Microbiol 11, 16-19.
12. García, M. T., Mellado, E., Ostos, J. C. & Ventosa, A. (2004). Halomonas organivorans sp. nov., a moderate halophile able to degrade aromatic compounds. Int J Syst Evol Microbiol 54, 1723-1728.
13. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
14. Heyrman, J., Balcaen, A., de Vos, P. & Swings, J. (2002). Halomonas muralis sp. nov., isolated from microbial biofilms colonizing the walls and murals of the Saint-Catherine chapel (Castle Herberstein, Austria). Int J Syst Evol Microbiol 52, 2049-2054.
15. Ivanova, E. P., Kiprianova, E. A., Mikhailov, V. V., Levanova, G. F., Garagulya, A. D., Gorshkova, N. M., Vysotskii, M. V., Nicolau, D. V., Yumoto, N. & other authors (1998). Phenotypic diversity of Pseudoalteromonas citrea from different marine habitats and emendation of the description. Int J Syst Bacteriol 48, 247-256.
16. Jeon, C. O., Lim, J.-M., Lee, J. R., Lee, G. S., Park, D.-J., Lee, J.-C., Oh, H.-W. & Kim, C.-J. (2007). Halomonas kribbensis sp. nov., a novel moderately halophilic bacterium isolated from a solar saltern in Korea. Int J Syst Evol Microbiol 57, 2194-2198.
17. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
18. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
19. Kumar, S., Nei, M., Dudley, J. & Tamura, K. (2008). MEGA: a biologistcentric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9, 299-306.
20. Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
21. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A. & other authors (2007). CLUSTAL W and CLUSTAL_X version 2.0. Bioinformatics 23, 2947-2948.
22. Li, J., Chen, C., Zhao, G.-Z., Klenk, H.-P., Pukall, R., Zhang, Y.-Q., Tang, S.-K. & Li, W.-J. (2009). Description of Dietzia lutea sp. nov., isolated from a desert soil in Egypt. Syst Appl Microbiol 32, 118-123.
23. Margesin, R. & Schinner, F. (2001). Potential of halotolerant and halophilic microorganisms for biotechnology. Extremophiles 5, 73-83.
24. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
25. Martínez-Cánovas, M. J., Quesada, E., Llamas, I. & Béjar, V. (2004). Halomonas ventosae sp. nov., a moderately halophilic, denitrifying, exopolysaccharide-producing bacterium. Int J Syst Evol Microbiol 54, 733-737.
26. Mata, J. A., Martínez-Cánovas, J., Quesada, E. & Béjar, V. (2002). A detailed phenotypic characterisation of the type strains of Halomonas species. Syst Appl Microbiol 25, 360-375.
27. Nieto, J. J., Vargas, C. & Ventosa, A. (2000). Osmoprotection mechanisms in the moderately halophilic bacterium Halomonas elongata. In Recent Research Developments in Microbiology, vol. 4, pp. 43-54. Edited by S. G. Pandalai. Trivandrum, India: Research Signpost.
28. Okamoto, T., Taguchi, H., Nakamura, K., Ikenaga, H., Kuraishi, H. & Yamasato, K. (1993). Zymobacter palmae gen. nov., sp. nov., a new ethanol-fermenting peritrichous bacterium isolated from palm sap. Arch Microbiol 160, 333-337.
29. Pettersson, B., de Silva, S. K., Uhlén, M. & Priest, F. G. (2000). Bacillus siralis sp. nov., a novel species from silage with a higher order structural attribute in the 16S rRNA genes. Int J Syst Evol Microbiol 50, 2181-2187.
30. Quesada, E., Bejar, V., Valderrama, M. J. & Ramos-Cormenzana, A. (1987). Growth characteristics and salt requirement of Deleya halophila in a defined medium. Curr Microbiol 16, 21-25.
31. Romano, I., Nicolaus, B., Lama, L., Manca, M. C. & Gambacorta, A. (1996). Characterization of a haloalkalophilic strictly aerobic bacterium, isolated from Pantelleria island. Syst Appl Microbiol 19, 326-333.
32. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
33. Sánchez-Porro, C., Martín, S., Mellado, E. & Ventosa, A. (2003). Diversity of moderately halophilic bacteria producing extracellular hydrolytic enzymes. J Appl Microbiol 94, 295-300.
34. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
35. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
36. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
37. Ventosa, A., Nieto, J. J. & Oren, A. (1998). Biology of moderately halophilic aerobic bacteria. Microbiol Mol Biol Rev 62, 504-544.
38. Vreeland, R. H., Litchfield, C. D., Martin, E. L. & Elliot, E. (1980). Halomonas elongata, a new genus and species of extremely salttolerant bacteria. Int J Syst Bacteriol 30, 485-495.
39. Wang, Y., Tang, S.-K., Lou, K., Mao, P.-H., Jin, X., Jiang, C.-L., Xu, L.-H. & Li, W.-J. (2008). Halomonas lutea sp. nov., a moderately halophilic bacterium isolated from a salt lake. Int J Syst Evol Microbiol 58, 2065-2069.
40. Wang, Y., Tang, S.-K., Lou, K., Lee, J.-C., Jeon, C. O., Xu, L.-H., Kim, C.-J. & Li, W.-J. (2009). Aidingimonas halophila gen. nov., sp. nov., a moderately halophilic bacterium isolated from a salt lake. Int J Syst Evol Microbiol 59, 3088-3094.
41. Zakrzewska-Czerwińska, J., Mordarski, M. & Goodfellow, M. (1988). DNA base composition and homology values in the classification of some Rhodococcus species. J Gen Microbiol 134, 2807-2813.
42. Zhao, B., Wang, H., Mao, X. & Li, R. (2009). Biodegradation of phenanthrene by a halophilic bacterial consortium under aerobic conditions. Curr Microbiol 58, 205-210.
43. Zhao, B., Wang, H., Li, R. & Mao, X. (2010). Thalassospira xianhensis sp. nov., a polycyclic aromatic hydrocarbon-degrading marine bacterium. Int J Syst Evol Microbiol 60, 1125-1129.