-
1
-
-
41349119880
-
Stochastic switching as a survival strategy in fluctuating environments
-
Acar M, Mettetal JT, Van Oudenaarden A. 2008. Stochastic switching as a survival strategy in fluctuating environments. Nat Genet. 40:471-475.
-
(2008)
Nat Genet.
, vol.40
, pp. 471-475
-
-
Acar, M.1
Mettetal, J.T.2
Van Oudenaarden, A.3
-
2
-
-
84876492379
-
Microbial individuality in the natural environment
-
Ackermann M. 2013. Microbial individuality in the natural environment. ISME J. 7:465-467.
-
(2013)
ISME J.
, vol.7
, pp. 465-467
-
-
Ackermann, M.1
-
3
-
-
84865682950
-
Amplification of the CUP1 gene is associated with evolution of copper tolerance in Saccharomyces cerevisiae
-
Adamo GM, Lotti M, Tamas MJ, Brocca S. 2012. Amplification of the CUP1 gene is associated with evolution of copper tolerance in Saccharomyces cerevisiae. Microbiology 158:2325-2335.
-
(2012)
Microbiology
, vol.158
, pp. 2325-2335
-
-
Adamo, G.M.1
Lotti, M.2
Tamas, M.J.3
Brocca, S.4
-
4
-
-
84865592644
-
Deciphering the molecular basis of wine yeast fermentation traits using a combined genetic and genomic approach
-
Ambroset C, et al. 2011. Deciphering the molecular basis of wine yeast fermentation traits using a combined genetic and genomic approach. G3 (Bethesda) 1:263-281.
-
(2011)
G3 (Bethesda)
, vol.1
, pp. 263-281
-
-
Ambroset, C.1
-
5
-
-
43249103636
-
Cell-to-cell stochastic variation in gene expression is a complex genetic trait
-
Ansel J, et al. 2008. Cell-to-cell stochastic variation in gene expression is a complex genetic trait. PLoS Genet. 4:e1000049.
-
(2008)
PLoS Genet.
, vol.4
, pp. e1000049
-
-
Ansel, J.1
-
6
-
-
79952638264
-
Cellular decision making and biological noise: From microbes to mammals
-
Balazsi G, Van Oudenaarden A, Collins JJ. 2011. Cellular decision making and biological noise: from microbes to mammals. Cell 144:910-925.
-
(2011)
Cell
, vol.144
, pp. 910-925
-
-
Balazsi, G.1
Van Oudenaarden, A.2
Collins, J.J.3
-
7
-
-
33745287724
-
Noise in protein expression scales with natural protein abundance
-
Bar-Even A, et al. 2006. Noise in protein expression scales with natural protein abundance. Nat Genet. 38:636-643.
-
(2006)
Nat Genet.
, vol.38
, pp. 636-643
-
-
Bar-Even, A.1
-
8
-
-
33845616177
-
Phenotypic consequences of promoter-mediated transcriptional noise
-
Blake WJ, et al. 2006. Phenotypic consequences of promoter-mediated transcriptional noise. Mol Cell. 24:853-865.
-
(2006)
Mol Cell.
, vol.24
, pp. 853-865
-
-
Blake, W.J.1
-
10
-
-
84874990532
-
Comparative genomics: A revolutionary tool for wine yeast strain development
-
Borneman AR, Pretorius IS, Chambers PJ. 2013. Comparative genomics: a revolutionary tool for wine yeast strain development. Curr Opin Biotechnol. 24:192-199.
-
(2013)
Curr Opin Biotechnol.
, vol.24
, pp. 192-199
-
-
Borneman, A.R.1
Pretorius, I.S.2
Chambers, P.J.3
-
11
-
-
84884933928
-
Differential adaptation to multi-stressed conditions of wine fermentation revealed by variations in yeast regulatory networks
-
Brion C, Ambroset C, Sanchez I, Legras JL, Blondin B. 2013. Differential adaptation to multi-stressed conditions of wine fermentation revealed by variations in yeast regulatory networks. BMC Genomics 14:681.
-
(2013)
BMC Genomics
, vol.14
, pp. 681
-
-
Brion, C.1
Ambroset, C.2
Sanchez, I.3
Legras, J.L.4
Blondin, B.5
-
12
-
-
84876991257
-
Promoter sequence determines the relationship between expression level and noise
-
Carey LB, Van Dijk D, Sloot PM, Kaandorp JA, Segal E. 2013. Promoter sequence determines the relationship between expression level and noise. PLoS Biol. 11:e1001528.
-
(2013)
PLoS Biol.
, vol.11
, pp. e1001528
-
-
Carey, L.B.1
Van Dijk, D.2
Sloot, P.M.3
Kaandorp, J.A.4
Segal, E.5
-
13
-
-
79954600765
-
Expression variability of co-regulated genes differentiates Saccharomyces cerevisiae strains
-
Carreto L, et al. 2011. Expression variability of co-regulated genes differentiates Saccharomyces cerevisiae strains. BMC Genomics 12:201.
-
(2011)
BMC Genomics
, vol.12
, pp. 201
-
-
Carreto, L.1
-
14
-
-
84860257802
-
Interplay between gene expression noise and regulatory network architecture
-
Chalancon G, et al. 2012. Interplay between gene expression noise and regulatory network architecture. Trends Genet. 28:221-232.
-
(2012)
Trends Genet.
, vol.28
, pp. 221-232
-
-
Chalancon, G.1
-
15
-
-
84873521620
-
Dynamic large-scale chromosomal rearrangements fuel rapid adaptation in yeast populations
-
Chang SL, Lai HY, Tung SY, Leu JY. 2013. Dynamic large-scale chromosomal rearrangements fuel rapid adaptation in yeast populations. PLoS Genet. 9:e1003232.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003232
-
-
Chang, S.L.1
Lai, H.Y.2
Tung, S.Y.3
Leu, J.Y.4
-
16
-
-
0036137277
-
DNA sequence quality trimming and vector removal
-
Chou HH, Holmes MH. 2001. DNA sequence quality trimming and vector removal. Bioinformatics 17:1093-1104.
-
(2001)
Bioinformatics
, vol.17
, pp. 1093-1104
-
-
Chou, H.H.1
Holmes, M.H.2
-
17
-
-
84875214621
-
Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise
-
Dadiani M, et al. 2013. Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise. Genome Res. 23:966-976.
-
(2013)
Genome Res.
, vol.23
, pp. 966-976
-
-
Dadiani, M.1
-
19
-
-
79961170850
-
The genomes of fermentative Saccharomyces
-
Dequin S, Casaregola S. 2011. The genomes of fermentative Saccharomyces. C R Biol. 334:687-693.
-
(2011)
C R Biol.
, vol.334
, pp. 687-693
-
-
Dequin, S.1
Casaregola, S.2
-
20
-
-
25444432042
-
Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures
-
Dunn B, Levine RP, Sherlock G. 2005. Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures. BMC Genomics 6:53.
-
(2005)
BMC Genomics
, vol.6
, pp. 53
-
-
Dunn, B.1
Levine, R.P.2
Sherlock, G.3
-
21
-
-
84860591356
-
Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments
-
Dunn B, Richter C, Kvitek DJ, Pugh T, Sherlock G. 2012. Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments. Genome Res. 22:908-924.
-
(2012)
Genome Res.
, vol.22
, pp. 908-924
-
-
Dunn, B.1
Richter, C.2
Kvitek, D.J.3
Pugh, T.4
Sherlock, G.5
-
23
-
-
84889565165
-
The molecular basis of phenotypic variation in yeast
-
Fay JC. 2013. The molecular basis of phenotypic variation in yeast. Curr Opin Genet Dev. 23:672-677.
-
(2013)
Curr Opin Genet Dev.
, vol.23
, pp. 672-677
-
-
Fay, J.C.1
-
24
-
-
84893011273
-
Natural sequence variants of yeast environmental sensors confer cell-to-cell expression variability
-
Fehrmann S, et al. 2013. Natural sequence variants of yeast environmental sensors confer cell-to-cell expression variability. Mol Syst Biol. 9:695.
-
(2013)
Mol Syst Biol.
, vol.9
, pp. 695
-
-
Fehrmann, S.1
-
25
-
-
0343299702
-
Tandem gene amplification mediates copper resistance in yeast
-
Fogel S, Welch JW. 1982. Tandem gene amplification mediates copper resistance in yeast. Proc Natl Acad Sci U S A. 79:5342-5346.
-
(1982)
Proc Natl Acad Sci U S A.
, vol.79
, pp. 5342-5346
-
-
Fogel, S.1
Welch, J.W.2
-
26
-
-
62449123034
-
A chance at survival: Gene expression noise and phenotypic diversification strategies
-
Fraser D, Kaern M. 2009. A chance at survival: gene expression noise and phenotypic diversification strategies. Mol Microbiol. 71:1333-1340.
-
(2009)
Mol Microbiol.
, vol.71
, pp. 1333-1340
-
-
Fraser, D.1
Kaern, M.2
-
27
-
-
16644373292
-
Noise minimization in eukaryotic gene expression
-
Fraser HB, Hirsh AE, Giaever G, Kumm J, Eisen MB. 2004. Noise minimization in eukaryotic gene expression. PLoS Biol. 2:e137.
-
(2004)
PLoS Biol.
, vol.2
, pp. e137
-
-
Fraser, H.B.1
Hirsh, A.E.2
Giaever, G.3
Kumm, J.4
Eisen, M.B.5
-
28
-
-
58149147307
-
A simple screen to identify promoters conferring high levels of phenotypic noise
-
Freed NE, et al. 2008. A simple screen to identify promoters conferring high levels of phenotypic noise. PLoS Genet. 4:e1000307.
-
(2008)
PLoS Genet.
, vol.4
, pp. e1000307
-
-
Freed, N.E.1
-
29
-
-
85028142271
-
Phenotypic heterogeneity is a selected trait in natural yeast populations subject to environmental stress
-
Holland SL, Reader T, Dyer PS, Avery SV. 2014. Phenotypic heterogeneity is a selected trait in natural yeast populations subject to environmental stress. Environ Microbiol. 16:1729-1740.
-
(2014)
Environ Microbiol.
, vol.16
, pp. 1729-1740
-
-
Holland, S.L.1
Reader, T.2
Dyer, P.S.3
Avery, S.V.4
-
30
-
-
84870562146
-
Noise-mean relationship in mutated promoters
-
Hornung G, et al. 2012. Noise-mean relationship in mutated promoters. Genome Res. 22:2409-2417.
-
(2012)
Genome Res.
, vol.22
, pp. 2409-2417
-
-
Hornung, G.1
-
32
-
-
38549126635
-
Concurrent fast and slow cycling of a transcriptional activator at an endogenous promoter
-
Karpova TS, et al. 2008. Concurrent fast and slow cycling of a transcriptional activator at an endogenous promoter. Science 319:466-469.
-
(2008)
Science
, vol.319
, pp. 466-469
-
-
Karpova, T.S.1
-
33
-
-
42949131308
-
Selection to minimise noise in living systems and its implications for the evolution of gene expression
-
Lehner B. 2008. Selection to minimise noise in living systems and its implications for the evolution of gene expression. Mol Syst Biol. 4:170.
-
(2008)
Mol Syst Biol.
, vol.4
, pp. 170
-
-
Lehner, B.1
-
34
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, et al. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
35
-
-
84874478803
-
Polygenic molecular architecture underlying non-sexual cell aggregation in budding yeast
-
Li J, et al. 2013. Polygenic molecular architecture underlying non-sexual cell aggregation in budding yeast. DNA Res. 20:55-66.
-
(2013)
DNA Res.
, vol.20
, pp. 55-66
-
-
Li, J.1
-
36
-
-
77956892318
-
The role of physiological heterogeneity in microbial population behavior
-
Lidstrom ME, Konopka MC. 2010. The role of physiological heterogeneity in microbial population behavior. Nat Chem Biol. 6:705-712.
-
(2010)
Nat Chem Biol.
, vol.6
, pp. 705-712
-
-
Lidstrom, M.E.1
Konopka, M.C.2
-
37
-
-
84866170772
-
Advances in quantitative trait analysis in yeast
-
Liti G, Louis EJ. 2012. Advances in quantitative trait analysis in yeast. PLoS Genet. 8:e1002912.
-
(2012)
PLoS Genet.
, vol.8
, pp. e1002912
-
-
Liti, G.1
Louis, E.J.2
-
38
-
-
77952492425
-
Tuning and controlling gene expression noise in synthetic gene networks
-
Murphy KF, Adams RM, Wang X, Balazsi G, Collins JJ. 2010. Tuning and controlling gene expression noise in synthetic gene networks. Nucleic Acids Res. 38:2712-2726.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2712-2726
-
-
Murphy, K.F.1
Adams, R.M.2
Wang, X.3
Balazsi, G.4
Collins, J.J.5
-
39
-
-
33745220278
-
Single-cell proteomic analysis of S. Cerevisiae reveals the architecture of biological noise
-
Newman JR, et al. 2006. Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature 441:840-846.
-
(2006)
Nature
, vol.441
, pp. 840-846
-
-
Newman, J.R.1
-
40
-
-
70349515584
-
Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118
-
Novo M, et al. 2009. Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc Natl Acad Sci U S A. 106:16333-16338.
-
(2009)
Proc Natl Acad Sci U S A.
, vol.106
, pp. 16333-16338
-
-
Novo, M.1
-
41
-
-
53549123008
-
Nature, nurture, or chance: Stochastic gene expression and its consequences
-
Raj A, Van Oudenaarden A. 2008. Nature, nurture, or chance: stochastic gene expression and its consequences. Cell 135:216-226.
-
(2008)
Cell
, vol.135
, pp. 216-226
-
-
Raj, A.1
Van Oudenaarden, A.2
-
42
-
-
2942718723
-
Control of stochasticity in eukaryotic gene expression
-
Raser JM, O'Shea EK. 2004. Control of stochasticity in eukaryotic gene expression. Science 304:1811-1814.
-
(2004)
Science
, vol.304
, pp. 1811-1814
-
-
Raser, J.M.1
O'Shea, E.K.2
-
43
-
-
84869745575
-
The genetic basis of natural variation in oenological traits in Saccharomyces cerevisiae
-
Salinas F, et al. 2012. The genetic basis of natural variation in oenological traits in Saccharomyces cerevisiae. PLoS One 7:e49640.
-
(2012)
PLoS One
, vol.7
, pp. e49640
-
-
Salinas, F.1
-
45
-
-
84889242115
-
Genetic determinants and cellular constraints in noisy gene expression
-
Sanchez A, Golding I. 2013. Genetic determinants and cellular constraints in noisy gene expression. Science 342:1188-1193.
-
(2013)
Science
, vol.342
, pp. 1188-1193
-
-
Sanchez, A.1
Golding, I.2
-
46
-
-
84907527856
-
Probing the effect of promoters on noise in gene expression using thousands of designed sequences
-
Sharon E, et al. 2014. Probing the effect of promoters on noise in gene expression using thousands of designed sequences. Genome Res. 24:1698-1706.
-
(2014)
Genome Res.
, vol.24
, pp. 1698-1706
-
-
Sharon, E.1
-
47
-
-
0035168506
-
Remodeling of yeast CUP1 chromatin involves activator-dependent repositioning of nucleosomes over theentire geneand flankingsequences
-
Shen CH, Leblanc BP, Alfieri JA, Clark DJ. 2001. Remodeling of yeast CUP1 chromatin involves activator-dependent repositioning of nucleosomes over theentire geneand flankingsequences. Mol Cell Biol. 21:534-547.
-
(2001)
Mol Cell Biol.
, vol.21
, pp. 534-547
-
-
Shen, C.H.1
Leblanc, B.P.2
Alfieri, J.A.3
Clark, D.J.4
-
48
-
-
35448953506
-
Glutathione and Gts1p drive beneficial variability in the cadmium resistances of individual yeast cells
-
Smith MC, Sumner ER, Avery SV. 2007. Glutathione and Gts1p drive beneficial variability in the cadmium resistances of individual yeast cells. Mol Microbiol. 66:699-712.
-
(2007)
Mol Microbiol.
, vol.66
, pp. 699-712
-
-
Smith, M.C.1
Sumner, E.R.2
Avery, S.V.3
-
49
-
-
84907510835
-
Improving industrial yeast strains: Exploiting natural and artificial diversity
-
Steensels J, et al. 2014. Improving industrial yeast strains: exploiting natural and artificial diversity. FEMS Microbiol Rev. 38:947-995.
-
(2014)
FEMS Microbiol Rev.
, vol.38
, pp. 947-995
-
-
Steensels, J.1
-
50
-
-
84899932201
-
Oxidative stress response and nitrogen utilization are strongly variable in Saccharomyces cerevisiae wine strains with different fermentation performances
-
Treu L, et al. 2014. Oxidative stress response and nitrogen utilization are strongly variable in Saccharomyces cerevisiae wine strains with different fermentation performances. Appl Microbiol Biotechnol. 98:4119-4135.
-
(2014)
Appl Microbiol Biotechnol.
, vol.98
, pp. 4119-4135
-
-
Treu, L.1
-
52
-
-
69249106061
-
Positive selection for elevated gene expression noise in yeast
-
Zhang Z, Qian W, Zhang J. 2009. Positive selection for elevated gene expression noise in yeast. Mol Syst Biol. 5:299.
-
(2009)
Mol Syst Biol.
, vol.5
, pp. 299
-
-
Zhang, Z.1
Qian, W.2
Zhang, J.3
|