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Volumn 23, Issue 6, 2013, Pages 966-976

Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise

Author keywords

[No Author keywords available]

Indexed keywords

DNA; TRANSCRIPTION FACTOR;

EID: 84875214621     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.149096.112     Document Type: Article
Times cited : (48)

References (32)
  • 1
    • 77951902484 scopus 로고    scopus 로고
    • Nucleosome-depleted regions in cell-cycle-regulated promoters ensure reliable gene expression in every cell cycle
    • Bai L, Charvin G, Siggia ED, Cross FR. 2010. Nucleosome-depleted regions in cell-cycle-regulated promoters ensure reliable gene expression in every cell cycle. Dev Cell 18: 544-555.
    • (2010) Dev Cell , vol.18 , pp. 544-555
    • Bai, L.1    Charvin, G.2    Siggia, E.D.3    Cross, F.R.4
  • 3
    • 0242416539 scopus 로고    scopus 로고
    • Noise in eukaryotic gene expression
    • DOI 10.1038/nature01546
    • Blake WJ, Kaern M, Cantor CR, Collins JJ. 2003. Noise in eukaryotic gene expression. Nature 422: 633-637. (Pubitemid 36460419)
    • (2003) Nature , vol.422 , Issue.6932 , pp. 633-637
    • Blake, W.J.1    Kaern, M.2    Cantor, C.R.3    Collins, J.J.4
  • 5
    • 33645027986 scopus 로고    scopus 로고
    • Stochastic protein expression in individual cells at the single molecule level
    • Cai L, Friedman N, Xie XS. 2006. Stochastic protein expression in individual cells at the single molecule level. Nature 440: 358-362.
    • (2006) Nature , vol.440 , pp. 358-362
    • Cai, L.1    Friedman, N.2    Xie, X.S.3
  • 7
    • 63449105244 scopus 로고    scopus 로고
    • Intrinsic variability of gene expression encoded in nucleosome positioning sequences
    • Choi JK, Kim Y-J. 2009. Intrinsic variability of gene expression encoded in nucleosome positioning sequences. Nat Genet 41: 498-503.
    • (2009) Nat Genet , vol.41 , pp. 498-503
    • Choi, J.K.1    Kim, Y.-J.2
  • 8
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic gene expression in a single cell
    • DOI 10.1126/science.1070919
    • Elowitz MB, Levine AJ, Siggia ED, Swain PS. 2002. Stochastic gene expression in a single cell. Science 297: 1183-1186. (Pubitemid 36193353)
    • (2002) Science , vol.297 , Issue.5584 , pp. 1183-1186
    • Elowitz, M.B.1    Levine, A.J.2    Siggia, E.D.3    Swain, P.S.4
  • 10
    • 33750247101 scopus 로고    scopus 로고
    • Linking stochastic dynamics to population distribution: An analytical framework of gene expression
    • Friedman N, Cai L, Xie X. 2006. Linking stochastic dynamics to population distribution: An analytical framework of gene expression. Phys Rev Lett 97: 1-4.
    • (2006) Phys Rev Lett , vol.97 , pp. 1-4
    • Friedman, N.1    Cai, L.2    Xie, X.3
  • 11
    • 28944434119 scopus 로고    scopus 로고
    • Real-time kinetics of gene activity in individual bacteria
    • DOI 10.1016/j.cell.2005.09.031, PII S0092867405010378
    • Golding I, Paulsson J, Zawilski SM, Cox EC. 2005. Real-time kinetics of gene activity in individual bacteria. Cell 123: 1025-1036. (Pubitemid 41785418)
    • (2005) Cell , vol.123 , Issue.6 , pp. 1025-1036
    • Golding, I.1    Paulsson, J.2    Zawilski, S.M.3    Cox, E.C.4
  • 13
    • 0029026719 scopus 로고
    • Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure
    • Iyer V, Struhl K. 1995. Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure. EMBO J 14: 2570-2579.
    • (1995) EMBO J , vol.14 , pp. 2570-2579
    • Iyer, V.1    Struhl, K.2
  • 14
    • 19544379881 scopus 로고    scopus 로고
    • Stochasticity in gene expression: From theories to phenotypes
    • DOI 10.1038/nrg1615
    • Kaern M, Elston TC, Blake WJ, Collins JJ. 2005. Stochasticity in gene expression: From theories to phenotypes. Nat Rev Genet 6: 451-464. (Pubitemid 40733890)
    • (2005) Nature Reviews Genetics , vol.6 , Issue.6 , pp. 451-464
    • Kaern, M.1    Elston, T.C.2    Blake, W.J.3    Collins, J.J.4
  • 15
    • 0035193294 scopus 로고    scopus 로고
    • Stochasticity in transcriptional regulation: Origins, consequences, and mathematical representations
    • Kepler TB, Elston TC. 2001. Stochasticity in transcriptional regulation: Origins, consequences, and mathematical representations. Biophys J 81: 3116-3136. (Pubitemid 33111463)
    • (2001) Biophysical Journal , vol.81 , Issue.6 , pp. 3116-3136
    • Kepler, T.B.1    Elston, T.C.2
  • 16
    • 79955407832 scopus 로고    scopus 로고
    • Real-time observation of transcription initiation and elongation on an endogenous yeast gene
    • Larson DR, Zenklusen D, Wu B, Chao JA, Singer RH. 2011. Real-time observation of transcription initiation and elongation on an endogenous yeast gene. Science 332: 475-478.
    • (2011) Science , vol.332 , pp. 475-478
    • Larson, D.R.1    Zenklusen, D.2    Wu, B.3    Chao, J.A.4    Singer, R.H.5
  • 17
    • 34347260600 scopus 로고    scopus 로고
    • Living with noisy genes: How cells function reliably with inherent variability in gene expression
    • DOI 10.1146/annurev.biophys.36.040306.132705
    • Maheshri N, O'Shea EK. 2007. Living with noisy genes: How cells function reliably with inherent variability in gene expression. Annu Rev Biophys Biomol Struct 36: 413-434. (Pubitemid 46998126)
    • (2007) Annual Review of Biophysics and Biomolecular Structure , vol.36 , pp. 413-434
    • Maheshri, N.1    O'Shea, E.K.2
  • 20
    • 62549083590 scopus 로고    scopus 로고
    • Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression
    • Nevozhay D, Adams RM, Murphy KF, Josic K, Balázsi G. 2009. Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression. Proc Natl Acad Sci 106: 5123-5128.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 5123-5128
    • Nevozhay, D.1    Adams, R.M.2    Murphy, K.F.3    Josic, K.4    Balázsi, G.5
  • 21
    • 0034608143 scopus 로고    scopus 로고
    • Random signal fluctuations can reduce random fluctuations in regulated components of chemical regulatory networks
    • Paulsson J, Ehrenberg M. 2000. Random signal fluctuations can reduce random fluctuations in regulated components of chemical regulatory networks. Phys Rev Lett 84: 5447-5450.
    • (2000) Phys Rev Lett , vol.84 , pp. 5447-5450
    • Paulsson, J.1    Ehrenberg, M.2
  • 22
    • 67650319009 scopus 로고    scopus 로고
    • Single-molecule approaches to stochastic gene expression
    • Raj A, van Oudenaarden A. 2009. Single-molecule approaches to stochastic gene expression. Annu Rev Biophys 38: 255-270.
    • (2009) Annu Rev Biophys , vol.38 , pp. 255-270
    • Raj, A.1    Van Oudenaarden, A.2
  • 23
    • 2942718723 scopus 로고    scopus 로고
    • Control of stochasticity in eukaryotic gene expression
    • DOI 10.1126/science.1098641
    • Raser JM, O'Shea EK. 2004. Control of stochasticity in eukaryotic gene expression. Science 304: 1811-1814. (Pubitemid 38787899)
    • (2004) Science , vol.304 , Issue.5678 , pp. 1811-1814
    • Raser, J.M.1    O'Shea, E.K.2
  • 25
    • 0028328719 scopus 로고
    • Transcription of individual genes in eukaryotic cells occurs randomly and infrequently
    • Ross IL, Browne CM, Hume DA. 1994. Transcription of individual genes in eukaryotic cells occurs randomly and infrequently. Immunol Cell Biol 72: 177-185. (Pubitemid 24135458)
    • (1994) Immunology and Cell Biology , vol.72 , Issue.2 , pp. 177-185
    • Ross, I.L.1    Browne, C.M.2    Hume, D.A.3
  • 26
    • 60349115060 scopus 로고    scopus 로고
    • Poly(dA:dT) tracts: Major determinants of nucleosome organization
    • Segal E, Widom J. 2009. Poly(dA:dT) tracts: Major determinants of nucleosome organization. Curr Opin Struct Biol 19: 65-71.
    • (2009) Curr Opin Struct Biol , vol.19 , pp. 65-71
    • Segal, E.1    Widom, J.2
  • 29
    • 77955102352 scopus 로고    scopus 로고
    • Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
    • Taniguchi Y, Choi PJ, Li GW, Chen H, Babu M, Hearn J, Emili A, Xie XS. 2010. Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329: 533-538.
    • (2010) Science , vol.329 , pp. 533-538
    • Taniguchi, Y.1    Choi, P.J.2    Li, G.W.3    Chen, H.4    Babu, M.5    Hearn, J.6    Emili, A.7    Xie, X.S.8
  • 30
    • 43749088127 scopus 로고    scopus 로고
    • Two strategies for gene regulation by promoter nucleosomes
    • DOI 10.1101/gr.076059.108
    • Tirosh I, Barkai N, Valouev A, Ichikawa J, Tonthat T, Song JS, Liu X, Liu XS, Mavrich TN, Ioshikhes IP, et al. 2008. Two strategies for gene regulation by promoter nucleosomes. Genome Res 18: 1084-1091. (Pubitemid 351931159)
    • (2008) Genome Research , vol.18 , Issue.7 , pp. 1084-1091
    • Tirosh, I.1    Barkai, N.2
  • 31
    • 77649220197 scopus 로고    scopus 로고
    • Noise can induce bimodality in positive transcriptional feedback loops without bistability
    • To T-L, Maheshri N. 2010. Noise can induce bimodality in positive transcriptional feedback loops without bistability. Science 327: 1142-1145.
    • (2010) Science , vol.327 , pp. 1142-1145
    • To, T.-L.1    Maheshri, N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.