-
1
-
-
84866170772
-
Advances in quantitative trait analysis in yeast
-
Liti G., Louis E.J. Advances in quantitative trait analysis in yeast. PLoS Genet 2012, 8:e1002912.
-
(2012)
PLoS Genet
, vol.8
-
-
Liti, G.1
Louis, E.J.2
-
2
-
-
84855258100
-
The QTN program and the alleles that matter for evolution: all that's gold does not glitter
-
Rockman M.V. The QTN program and the alleles that matter for evolution: all that's gold does not glitter. Evolution 2012, 66:1-17.
-
(2012)
Evolution
, vol.66
, pp. 1-17
-
-
Rockman, M.V.1
-
3
-
-
0035045050
-
Genetic and nongenetic bases for the L-shaped distribution of quantitative trait loci effects
-
Bost B., de Vienne D., Hospital F., Moreau L., Dillmann C. Genetic and nongenetic bases for the L-shaped distribution of quantitative trait loci effects. Genetics 2001, 157:1773-1787.
-
(2001)
Genetics
, vol.157
, pp. 1773-1787
-
-
Bost, B.1
de Vienne, D.2
Hospital, F.3
Moreau, L.4
Dillmann, C.5
-
4
-
-
0037149488
-
Dissecting the architecture of a quantitative trait locus in yeast
-
Steinmetz L.M., Sinha H., Richards D.R., Spiegelman J.I., Oefner P.J., McCusker J.H., Davis R.W. Dissecting the architecture of a quantitative trait locus in yeast. Nature 2002, 416:326-330.
-
(2002)
Nature
, vol.416
, pp. 326-330
-
-
Steinmetz, L.M.1
Sinha, H.2
Richards, D.R.3
Spiegelman, J.I.4
Oefner, P.J.5
McCusker, J.H.6
Davis, R.W.7
-
5
-
-
33751356549
-
Four linked genes participate in controlling sporulation efficiency in budding yeast
-
Ben-Ari G., Zenvirth D., Sherman A., David L., Klutstein M., Lavi U., Hillel J., Simchen G. Four linked genes participate in controlling sporulation efficiency in budding yeast. PLoS Genet 2006, 2:e195.
-
(2006)
PLoS Genet
, vol.2
-
-
Ben-Ari, G.1
Zenvirth, D.2
Sherman, A.3
David, L.4
Klutstein, M.5
Lavi, U.6
Hillel, J.7
Simchen, G.8
-
6
-
-
70350136778
-
Polymorphisms in multiple genes contribute to the spontaneous mitochondrial genome instability of Saccharomyces cerevisiae S288C strains
-
Dimitrov L.N., Brem R.B., Kruglyak L., Gottschling D.E. Polymorphisms in multiple genes contribute to the spontaneous mitochondrial genome instability of Saccharomyces cerevisiae S288C strains. Genetics 2009, 183:365-383.
-
(2009)
Genetics
, vol.183
, pp. 365-383
-
-
Dimitrov, L.N.1
Brem, R.B.2
Kruglyak, L.3
Gottschling, D.E.4
-
7
-
-
84860571592
-
Identification of novel causative genes determining the complex trait of high ethanol tolerance in yeast using pooled-segregant whole-genome sequence analysis
-
Swinnen S., Schaerlaekens K., Pais T., Claesen J., Hubmann G., Yang Y., Demeke M., Foulquié-Moreno M.R., Goovaerts A., Souvereyns K., et al. Identification of novel causative genes determining the complex trait of high ethanol tolerance in yeast using pooled-segregant whole-genome sequence analysis. Genome Res 2012, 22:975-984.
-
(2012)
Genome Res
, vol.22
, pp. 975-984
-
-
Swinnen, S.1
Schaerlaekens, K.2
Pais, T.3
Claesen, J.4
Hubmann, G.5
Yang, Y.6
Demeke, M.7
Foulquié-Moreno, M.R.8
Goovaerts, A.9
Souvereyns, K.10
-
8
-
-
33746594063
-
Adaptive evolution by mutations in the FLO11 gene
-
Fidalgo M., Barrales R.R., Ibeas J.I., Jimenez J. Adaptive evolution by mutations in the FLO11 gene. Proc Natl Acad Sci U S A 2006, 103:11228-11233.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 11228-11233
-
-
Fidalgo, M.1
Barrales, R.R.2
Ibeas, J.I.3
Jimenez, J.4
-
9
-
-
0032937504
-
Functional analysis of HO gene in delayed homothallism in Saccharomyces cerevisiae wy2
-
Ekino K., Kwon I., Goto M., Yoshino S., Furukawa K. Functional analysis of HO gene in delayed homothallism in Saccharomyces cerevisiae wy2. Yeast 1999, 15:451-458.
-
(1999)
Yeast
, vol.15
, pp. 451-458
-
-
Ekino, K.1
Kwon, I.2
Goto, M.3
Yoshino, S.4
Furukawa, K.5
-
10
-
-
58849139595
-
Genetic interactions between transcription factors cause natural variation in yeast
-
Gerke J., Lorenz K., Cohen B. Genetic interactions between transcription factors cause natural variation in yeast. Science 2009, 323:498-501.
-
(2009)
Science
, vol.323
, pp. 498-501
-
-
Gerke, J.1
Lorenz, K.2
Cohen, B.3
-
11
-
-
46249109337
-
Incompatibilities involving yeast mismatch repair genes: a role for genetic modifiers and implications for disease penetrance and variation in genomic mutation rates
-
Demogines A., Wong A., Aquadro C., Alani E. Incompatibilities involving yeast mismatch repair genes: a role for genetic modifiers and implications for disease penetrance and variation in genomic mutation rates. PLoS Genet 2008, 4:e1000103.
-
(2008)
PLoS Genet
, vol.4
-
-
Demogines, A.1
Wong, A.2
Aquadro, C.3
Alani, E.4
-
12
-
-
79953763912
-
A tradeoff drives the evolution of reduced metal resistance in natural populations of yeast
-
Chang S., Leu J. A tradeoff drives the evolution of reduced metal resistance in natural populations of yeast. PLoS Genet 2011, 7:e1002034.
-
(2011)
PLoS Genet
, vol.7
-
-
Chang, S.1
Leu, J.2
-
13
-
-
48249090887
-
Identification and dissection of a complex DNA repair sensitivity phenotype in Baker's yeast
-
Demogines A., Smith E., Kruglyak L., Alani E. Identification and dissection of a complex DNA repair sensitivity phenotype in Baker's yeast. PLoS Genet 2008, 4:e1000123.
-
(2008)
PLoS Genet
, vol.4
-
-
Demogines, A.1
Smith, E.2
Kruglyak, L.3
Alani, E.4
-
14
-
-
77952332278
-
Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations
-
Will J.L., Kim H.S., Clarke J., Painter J.C., Fay J.C., Gasch A.P. Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations. PLoS Genet 2010, 6:e1000893.
-
(2010)
PLoS Genet
, vol.6
-
-
Will, J.L.1
Kim, H.S.2
Clarke, J.3
Painter, J.C.4
Fay, J.C.5
Gasch, A.P.6
-
15
-
-
50849102293
-
A catalog of neutral and deleterious polymorphism in yeast
-
Doniger S.W., Kim H.S., Swain D., Corcuera D., Williams M., Yang S., Fay J.C. A catalog of neutral and deleterious polymorphism in yeast. PLoS Genet 2008, 4:e1000183.
-
(2008)
PLoS Genet
, vol.4
-
-
Doniger, S.W.1
Kim, H.S.2
Swain, D.3
Corcuera, D.4
Williams, M.5
Yang, S.6
Fay, J.C.7
-
16
-
-
79959847334
-
Trait variation in yeast is defined by population history
-
Warringer J., Zörgö E., Cubillos F.A., Zia A., Gjuvsland A., Simpson J.T., Forsmark A., Durbin R., Omholt S.W., Louis E.J., et al. Trait variation in yeast is defined by population history. PLoS Genet 2011, 7:e1002111.
-
(2011)
PLoS Genet
, vol.7
-
-
Warringer, J.1
Zörgö, E.2
Cubillos, F.A.3
Zia, A.4
Gjuvsland, A.5
Simpson, J.T.6
Forsmark, A.7
Durbin, R.8
Omholt, S.W.9
Louis, E.J.10
-
17
-
-
51249106485
-
The loci of evolution: how predictable is genetic evolution?
-
Stern D.L., Orgogozo V. The loci of evolution: how predictable is genetic evolution?. Evolution 2008, 62:2155-2177.
-
(2008)
Evolution
, vol.62
, pp. 2155-2177
-
-
Stern, D.L.1
Orgogozo, V.2
-
18
-
-
0029894792
-
The yeast genome project: what did we learn?
-
Dujon B. The yeast genome project: what did we learn?. Trends Genet 1996, 12:263-270.
-
(1996)
Trends Genet
, vol.12
, pp. 263-270
-
-
Dujon, B.1
-
19
-
-
28444467392
-
Quantitative trait loci mapped to single-nucleotide resolution in yeast
-
Deutschbauer A.M., Davis R.W. Quantitative trait loci mapped to single-nucleotide resolution in yeast. Nat Genet 2005, 37:1333-1340.
-
(2005)
Nat Genet
, vol.37
, pp. 1333-1340
-
-
Deutschbauer, A.M.1
Davis, R.W.2
-
20
-
-
84873722165
-
Finding the sources of missing heritability in a yeast cross
-
Bloom J.S., Ehrenreich I.M., Loo W.T., Lite T.V., Kruglyak L. Finding the sources of missing heritability in a yeast cross. Nature 2013, 494:234-237.
-
(2013)
Nature
, vol.494
, pp. 234-237
-
-
Bloom, J.S.1
Ehrenreich, I.M.2
Loo, W.T.3
Lite, T.V.4
Kruglyak, L.5
-
21
-
-
57049095797
-
Sequential elimination of major-effect contributors identifies additional quantitative trait loci conditioning high-temperature growth in yeast
-
Sinha H., David L., Pascon R.C., Clauder-Münster S., Krishnakumar S., Nguyen M., Shi G., Dean J., Davis R.W., Oefner P.J., et al. Sequential elimination of major-effect contributors identifies additional quantitative trait loci conditioning high-temperature growth in yeast. Genetics 2008, 180:1661-1670.
-
(2008)
Genetics
, vol.180
, pp. 1661-1670
-
-
Sinha, H.1
David, L.2
Pascon, R.C.3
Clauder-Münster, S.4
Krishnakumar, S.5
Nguyen, M.6
Shi, G.7
Dean, J.8
Davis, R.W.9
Oefner, P.J.10
-
22
-
-
79953042531
-
Assessing the complex architecture of polygenic traits in diverged yeast populations
-
Cubillos F.A., Billi E., Zörgö E., Parts L., Fargier P., Omholt S., Blomberg A., Warringer J., Louis E.J., Liti G. Assessing the complex architecture of polygenic traits in diverged yeast populations. Mol Ecol 2011, 20:1401-1413.
-
(2011)
Mol Ecol
, vol.20
, pp. 1401-1413
-
-
Cubillos, F.A.1
Billi, E.2
Zörgö, E.3
Parts, L.4
Fargier, P.5
Omholt, S.6
Blomberg, A.7
Warringer, J.8
Louis, E.J.9
Liti, G.10
-
23
-
-
84869077785
-
Small- and large-effect quantitative trait locus interactions underlie variation in yeast sporulation efficiency
-
Lorenz K., Cohen B.A. Small- and large-effect quantitative trait locus interactions underlie variation in yeast sporulation efficiency. Genetics 2012, 192:1123-1132.
-
(2012)
Genetics
, vol.192
, pp. 1123-1132
-
-
Lorenz, K.1
Cohen, B.A.2
-
24
-
-
84884660819
-
QTL analysis of high thermotolerance with superior and downgraded parental yeast strains reveals new minor QTLs and converges on novel causative alleles involved in RNA processing
-
PLoS Genet
-
Yang Y, Foulquié-Moreno MR, Clement L, Erdei E, Tanghe A, Schaerlaekens K, Dumortier F, Thevelein JM: QTL analysis of high thermotolerance with superior and downgraded parental yeast strains reveals new minor QTLs and converges on novel causative alleles involved in RNA processing. PLoS Genet, 2013, 9:e1003693.
-
(2013)
, vol.9
-
-
Yang, Y.1
Foulquié-Moreno, M.R.2
Clement, L.3
Erdei, E.4
Tanghe, A.5
Schaerlaekens, K.6
Dumortier, F.7
Thevelein, J.M.8
-
25
-
-
84883360005
-
A noncomplementation screen for quantitative trait alleles in Saccharomyces cerevisiae
-
Kim H.S., Huh J., Riles L., Reyes A., Fay J.C. A noncomplementation screen for quantitative trait alleles in Saccharomyces cerevisiae. G3 (Bethesda) 2012, 2:753-760.
-
(2012)
G3 (Bethesda)
, vol.2
, pp. 753-760
-
-
Kim, H.S.1
Huh, J.2
Riles, L.3
Reyes, A.4
Fay, J.C.5
-
27
-
-
67651160667
-
Dissecting the pleiotropic consequences of a quantitative trait nucleotide
-
Kim H.S., Huh J., Fay J.C. Dissecting the pleiotropic consequences of a quantitative trait nucleotide. FEMS Yeast Res 2009, 9:713-722.
-
(2009)
FEMS Yeast Res
, vol.9
, pp. 713-722
-
-
Kim, H.S.1
Huh, J.2
Fay, J.C.3
-
28
-
-
72449193105
-
A combined-cross analysis reveals genes with drug-specific and background-dependent effects on drug sensitivity in Saccharomyces cerevisiae
-
Kim H.S., Fay J.C. A combined-cross analysis reveals genes with drug-specific and background-dependent effects on drug sensitivity in Saccharomyces cerevisiae. Genetics 2009, 183:1141-1151.
-
(2009)
Genetics
, vol.183
, pp. 1141-1151
-
-
Kim, H.S.1
Fay, J.C.2
-
29
-
-
84859240600
-
Genetic architecture of highly complex chemical resistance traits across four yeast strains
-
Ehrenreich I.M., Bloom J., Torabi N., Wang X., Jia Y., Kruglyak L. Genetic architecture of highly complex chemical resistance traits across four yeast strains. PLoS Genet 2012, 8:e1002570.
-
(2012)
PLoS Genet
, vol.8
-
-
Ehrenreich, I.M.1
Bloom, J.2
Torabi, N.3
Wang, X.4
Jia, Y.5
Kruglyak, L.6
-
30
-
-
0023444631
-
MKT1, a nonessential Saccharomyces cerevisiae gene with a temperature-dependent effect on replication of M2 double-stranded RNA
-
Wickner R.B. MKT1, a nonessential Saccharomyces cerevisiae gene with a temperature-dependent effect on replication of M2 double-stranded RNA. J Bacteriol 1987, 169:4941-4945.
-
(1987)
J Bacteriol
, vol.169
, pp. 4941-4945
-
-
Wickner, R.B.1
-
31
-
-
43249129715
-
Gene-environment interaction in yeast gene expression
-
Smith E.N., Kruglyak L. Gene-environment interaction in yeast gene expression. PLoS Biol 2008, 6:e83.
-
(2008)
PLoS Biol
, vol.6
-
-
Smith, E.N.1
Kruglyak, L.2
-
32
-
-
0042856391
-
Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors
-
Yvert G., Brem R., Whittle J., Akey J., Foss E., Smith E., Mackelprang R., Kruglyak L. Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors. Nat Genet 2003, 35:57-64.
-
(2003)
Nat Genet
, vol.35
, pp. 57-64
-
-
Yvert, G.1
Brem, R.2
Whittle, J.3
Akey, J.4
Foss, E.5
Smith, E.6
Mackelprang, R.7
Kruglyak, L.8
-
33
-
-
44849142385
-
Cascading transcriptional effects of a naturally occurring frameshift mutation in Saccharomyces cerevisiae
-
Brown K.M., Landry C.R., Hartl D.L., Cavalieri D. Cascading transcriptional effects of a naturally occurring frameshift mutation in Saccharomyces cerevisiae. Mol Ecol 2008, 17:2985-2997.
-
(2008)
Mol Ecol
, vol.17
, pp. 2985-2997
-
-
Brown, K.M.1
Landry, C.R.2
Hartl, D.L.3
Cavalieri, D.4
-
34
-
-
84873521620
-
Dynamic large-scale chromosomal rearrangements fuel rapid adaptation in yeast populations
-
Chang S., Lai H., Tung S., Leu J. Dynamic large-scale chromosomal rearrangements fuel rapid adaptation in yeast populations. PLoS Genet 2013, 9:e1003232.
-
(2013)
PLoS Genet
, vol.9
-
-
Chang, S.1
Lai, H.2
Tung, S.3
Leu, J.4
-
35
-
-
84884682741
-
Genotype-environment interactions reveal causal pathways that mediate genetic effects on phenotype
-
Gagneur J., Stegle O., Zhu C., Jakob P., Tekkedil M.M., Aiyar R.S., Schuon A.K., Pe'er D., Steinmetz L.M. Genotype-environment interactions reveal causal pathways that mediate genetic effects on phenotype. PLoS Genet 2013, 9:e1003803.
-
(2013)
PLoS Genet
, vol.9
-
-
Gagneur, J.1
Stegle, O.2
Zhu, C.3
Jakob, P.4
Tekkedil, M.M.5
Aiyar, R.S.6
Schuon, A.K.7
Pe'er, D.8
Steinmetz, L.M.9
-
36
-
-
77958514628
-
Correlating gene expression variation with cis-regulatory polymorphism in Saccharomyces cerevisiae
-
Chen K., van Nimwegen E., Rajewsky N., Siegal M.L. Correlating gene expression variation with cis-regulatory polymorphism in Saccharomyces cerevisiae. Genome Biol Evol 2010, 2:697-707.
-
(2010)
Genome Biol Evol
, vol.2
, pp. 697-707
-
-
Chen, K.1
van Nimwegen, E.2
Rajewsky, N.3
Siegal, M.L.4
-
37
-
-
84879349596
-
Population genomics and transcriptional consequences of regulatory motif variation in globally diverse Saccharomyces cerevisiae strains
-
Connelly C.F., Skelly D.A., Dunham M.J., Akey J.M. Population genomics and transcriptional consequences of regulatory motif variation in globally diverse Saccharomyces cerevisiae strains. Mol Biol Evol 2013, 30:1605-1613.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 1605-1613
-
-
Connelly, C.F.1
Skelly, D.A.2
Dunham, M.J.3
Akey, J.M.4
-
38
-
-
79957636947
-
Evidence of association between nucleosome occupancy and the evolution of transcription factor binding sites in yeast
-
Swamy K.B.S., Chu W., Wang C., Tsai H., Wang D. Evidence of association between nucleosome occupancy and the evolution of transcription factor binding sites in yeast. BMC Evol Biol 2011, 11:150.
-
(2011)
BMC Evol Biol
, vol.11
, pp. 150
-
-
Swamy, K.B.S.1
Chu, W.2
Wang, C.3
Tsai, H.4
Wang, D.5
-
39
-
-
34249723155
-
Frequent gain and loss of functional transcription factor binding sites
-
Doniger S.W., Fay J.C. Frequent gain and loss of functional transcription factor binding sites. PLoS Comput Biol 2007, 3:e99.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Doniger, S.W.1
Fay, J.C.2
-
40
-
-
69749122314
-
Identification of deleterious mutations within three human genomes
-
Chun S., Fay J.C. Identification of deleterious mutations within three human genomes. Genome Res 2009, 19:1553-1561.
-
(2009)
Genome Res
, vol.19
, pp. 1553-1561
-
-
Chun, S.1
Fay, J.C.2
-
41
-
-
84883233414
-
ZRT1 harbors an excess of nonsynonymous polymorphism and shows evidence of balancing selection in Saccharomyces cerevisiae
-
Engle E.K., Fay J.C. ZRT1 harbors an excess of nonsynonymous polymorphism and shows evidence of balancing selection in Saccharomyces cerevisiae. G3 (Bethesda) 2013, 10.1534/g3.112.005082.
-
(2013)
G3 (Bethesda)
-
-
Engle, E.K.1
Fay, J.C.2
-
42
-
-
77951530523
-
Genotype to phenotype: a complex problem
-
Dowell R.D., Ryan O., Jansen A., Cheung D., Agarwala S., Danford T., Bernstein D.A., Rolfe P.A., Heisler L.E., Chin B., et al. Genotype to phenotype: a complex problem. Science 2010, 328:469.
-
(2010)
Science
, vol.328
, pp. 469
-
-
Dowell, R.D.1
Ryan, O.2
Jansen, A.3
Cheung, D.4
Agarwala, S.5
Danford, T.6
Bernstein, D.A.7
Rolfe, P.A.8
Heisler, L.E.9
Chin, B.10
-
43
-
-
82255186724
-
Predicting phenotypic variation in yeast from individual genome sequences
-
Jelier R., Semple J.I., Garcia-Verdugo R., Lehner B. Predicting phenotypic variation in yeast from individual genome sequences. Nat Genet 2011, 43:1270-1274.
-
(2011)
Nat Genet
, vol.43
, pp. 1270-1274
-
-
Jelier, R.1
Semple, J.I.2
Garcia-Verdugo, R.3
Lehner, B.4
|