Culturomics and pyrosequencing evidence of the reduction in gut microbiota diversity in patients with broad-spectrum antibiotics

International Journal of Antimicrobial Agents

Volumn 44, Issue 2, 2014, Pages 117-124

  Dubourg, Grégory ^a,b   Lagier, Jean Christophe ^a,b   Robert, Catherine ^a   Armougom, Fabrice ^a   Hugon, Perrine ^a,b   Metidji, Sarah ^a   Dione, Niokhor ^a   Dangui, Nicole Prisca Makaya ^a   Pfleiderer, Anne ^a   Abrahao, Joñatas ^c   Musso, Didier ^d   Papazian, Laurent ^a,e   Brouqui, Philippe ^a,b   Bibi, Fehmida ^f   Yasir, Muhammad ^f   Vialettes, Bernard ^g   Raoult, Didier ^a,b,f  

^a AIX MARSEILLE UNIVERSITÉ   (France)

^b APHM Timone   (France)

^c FEDERAL UNIVERSITY OF MINAS GERAIS   (Brazil)

^d Institut Louis Malardé Pape'Ete   (France)

^e HÔPITAL NORD   (France)

^f KING ABDULAZIZ UNIVERSITY   (Saudi Arabia)

^g TIMONE HOSPITAL   (France)

Author keywords

Antibiotics; Culturomics; Diversity; Microbiota; Pyrosequencing

Indexed keywords

AMIKACIN; AMINOSALICYLIC ACID; AMOXICILLIN PLUS CLAVULANIC ACID; ANTIBIOTIC AGENT; BEDAQUILINE; CEFTAZIDIME; CIPROFLOXACIN; COTRIMOXAZOLE; CYCLOSERINE; DOXYCYCLINE; ETHAMBUTOL; HYDROXYCHLOROQUINE; IMIPENEM; ISONIAZID; LINEZOLID; MEROPENEM; METRONIDAZOLE; PIPERACILLIN PLUS TAZOBACTAM; PYRAZINAMIDE; RIFAMPICIN; SULFADIAZINE; TEICOPLANIN; ANTIINFECTIVE AGENT; BACTERIAL DNA; RIBOSOME DNA; RNA 16S;

ACTINOBACTERIA; ADULT; AGROCOCCUS JENENSIS; ANTIBIOTIC THERAPY; ARTHROBACTER; ARTHROBACTER PARIETIS; ARTHROBACTER POLYCHROMOGENES; ARTICLE; BACILLUS; BACILLUS HUMI; BACILLUS IDRIENSIS; BACILLUS NIABENSIS; BACTERIAL COUNT; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTEROIDETES; BIOMICS; BRACHYBACTERIUM PARACONGLOMERATUM; BUTYRICIMONAS MASSILIENSIS; BUTYRICIMONAS VIROSA; CASE REPORT; CELLULOSIMICROBIUM CELLULANS; COLLINSELLA MASSILIENSIS; CONTROLLED STUDY; CORYNEBACTERIUM REAMASSILIENSE; CULTUROMICS; DESEMZIA INCERTA; ENORMA TIMONENSIS; EXTENSIVELY DRUG RESISTANT TUBERCULOSIS; FECES ANALYSIS; FEMALE; FIRMICUTES; GRANULICATELLA PARA ADIACENS; HUMAN; INTESTINE FLORA; JANIBACTER HOYLEI; MALE; MICROBIAL DIVERSITY; MICROCOCCUS LYLAE; MICROSCOPY; MIDDLE AGED; NOCARDIOIDES MASSILIENSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PAENIBACILLUS; PAENIBACILLUS ANTIBIOTICOPHILA; PAENIBACILLUS IHUMII; PRIORITY JOURNAL; PYROSEQUENCING; PYTHEASELLA MASSILIENSIS; Q FEVER; SPECIES RICHNESS; SPOROSARCINA GINSENGISOLI; STAPHYLOCOCCUS VITULINUS; STREPTOMYCES THERMOVULGARIS; ADOLESCENT; BACTERIA; BACTERIAL LOAD; BIOTA; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; DRUG EFFECTS; FECES; GASTROINTESTINAL TRACT; GENETICS; GROWTH, DEVELOPMENT AND AGING; MASS SPECTROMETRY; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; YOUNG ADULT;

ADOLESCENT; ADULT; ANTI-BACTERIAL AGENTS; BACTERIA; BACTERIAL LOAD; BIOTA; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FECES; FEMALE; GASTROINTESTINAL TRACT; HUMANS; MALE; MIDDLE AGED; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; YOUNG ADULT;

EID: 84905585722     PISSN: 09248579     EISSN: 18727913     Source Type: Journal    
DOI: 10.1016/j.ijantimicag.2014.04.020     Document Type: Article

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