A geographically diverse collection of schizosaccharomyces pombe isolates shows limited phenotypic variation but extensive karyotypic diversity

G3: Genes, Genomes, Genetics

Volumn 1, Issue 7, 2011, Pages 615-626

  Brown, William R A ^a   Liti, Gianni ^a   Rosa, Carlos ^b   James, Steve ^c   Roberts, Ian ^d   Robert, Vincent ^e   Jolly, Neil ^f   Tang, Wen ^f   Baumann, Peter ^f   Green, Carter ^a   Schlegel, Kristina ^a   Young, Jonathan ^a   Hirchaud, Fabienne ^a   Leek, Spencer ^a   Thomas, Geraint ^a   Blomberg, Anders ^g   Warringer, Jonas ^g  

^a QUEEN S MEDICAL CENTRE   (United Kingdom)

^b FEDERAL UNIVERSITY OF MINAS GERAIS   (Brazil)

^c INSTITUTE OF FOOD RESEARCH   (United Kingdom)

^d CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

^e ARC INFRUITEC NIETVOORBIJ   (South Africa)

^f UNIVERSITY OF KANSAS SCHOOL OF MEDICINE   (United States)

^g UNIVERSITY OF GOTHENBURG   (Sweden)

Author keywords

Diversity; Fission yeast; karyotype; pombe

Indexed keywords

EID: 84863575746     PISSN: None     EISSN: 21601836     Source Type: Journal    
DOI: 10.1534/g3.111.001123     Document Type: Article

References (36)

1. Atwell, S., Y. S. Huang, B. J. Vilhjalmsson, G. Willems, M. Horton et al., 2010 Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465: 627-631.
2. Brown, W. R. A., 1988 A physical map of the human pseudoautosomal region. EMBO J. 7: 2377-2385.
3. Brown, W. R. A., P. J. MacKinnon, A. Villasante, N. Spurr, V. J. Buckle et al., 1990 Structure and polymorphism of human telomere-associated DNA. Cell 63: 119-132.
4. Cockerham, C. C., and B. S. Weir, 1984 Covariances of relatives stemming from a population undergoing mixed self and random mating. Biometrics 40: 157-164.
5. Corander, J., P. Marttinen, J. Siren, and J. Tang, 2008 Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics 9: 539.
6. R. Egel (Editor), 2003 The Molecular Biology of Schizosaccharomyces pombe. Springer-Verlag, Berlin.
7. Excoffier, L., G. Laval, and S. Schneider, 2005 Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50.
8. Fay, J. C., and J. A. Benavides, 2005 Evidence for domesticated and wild populations of Saccharomyces cerevisiae. PLoS Genet. 1: 66-71.
9. Florenzano, G., W. Balloni, and R. Materasisi, 1977 Contributo alla acologia dei lieviti Schizosaccharomyces sulle uve. Vitis 16: 38-44.
10. Fournier-Level, A., A. Korte, M. D. Cooper, M. Nordborg, J. Schmitt et al., 2011 A map of local adaptation in Arabidopsis thaliana. Science 334: 86-89.
11. Gomes, F. C., C. Pataro, J. B. Guerra, M. J. Neves, S. R. Correa et al., 2002 Physiological diversity and trehalose accumulation in Schizosaccharomyces pombe strains isolated from spontaneous fermentations during the production of the artisanal Brazilian cachaca. Can. J. Microbiol. 48: 399-406.
12. Gordon, J. L., K. P. Byrne, and K. H. Wolfe, 2011 Mechanisms of chromosome number evolution in yeast. PLoS Genet. 7: e1002190.
13. Greig, D., 2009 Reproductive isolation in Saccharomyces. Heredity 102: 39-44.
14. Johnson, L. J., V. Koufopanou, M. R. Goddard, R. Hetherington, S. M. Schafer et al., 2004 Population genetics of the wild yeast Saccharomyces paradoxus. Genetics 166: 43-52.
15. Kim, S., V. Plagnol, T. T. Hu, C. Toomajian, R. M. Clark et al., 2007 Recombination and linkage disequilibrium in Arabidopsis thaliana. Nat. Genet. 39: 1151-1155.
16. Leupold, U., 1950 Die Vererbung von Homothallie und Heterothallie bei Schizosaccharomyces pombe. Cr. Trav. Lab. Carlsberg Ser. Physiol. 24: 381-480.
17. Librado, P., and J. Rozas, 2009 DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
18. Liti, G., D. M. Carter, A. M. Moses, J. Warringer, L. Parts et al., 2009 Population genomics of domestic and wild yeasts. Nature 458: 337-341.
19. Lynch, M., W. Sung, K. Morris, N. Coffey, C. R. Landry et al., 2008 A genome-wide view of the spectrum of spontaneous mutations in yeast. Proc. Natl. Acad. Sci. USA 105: 9272-9277.
20. Mackay, T. F., E. A. Stone, and J. F. Ayroles, 2009 The genetics of quantitative traits: challenges and prospects. Nat. Rev. Genet. 10: 565-577.
21. Nemri, A., S. Atwell, A. M. Tarone, Y. S. Huang, K. Zhao et al., 2010 Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping. Proc. Natl. Acad. Sci. USA 107: 10302-10307.
22. Nieduszynski, C. A., and G. Liti, 2011 From sequence to function: insights from natural variation in budding yeasts. Biochim. Biophys. Acta 1810: 959-966.
23. Nogami, S., Y. Ohya, and G. Yvert, 2007 Genetic complexity and quantitative trait loci mapping of yeast morphological traits. PLoS Genet. 3: e31.
24. Nordborg, M., and D. Weigel, 2008 Next-generation genetics in plants. Nature 456: 720-723.
25. Parts, L., F. A. Cubillos, J. Warringer, K. Jain, F. Salinas et al., 2011 Revealing the genetic structure of a trait by sequencing a population under selection. Genome Res. 21: 1131-1138.
26. Pritchard, J. K., M. Stephens, and P. Donnelly, 2000 Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
27. Rhind, N., Z. Chen, M. Yassour, D. A. Thompson, B. J. Haas et al., 2011 Comparative functional genomics of the fission yeasts. Science 332: 930-936.
28. Ruderfer, D. M., S. C. Pratt, H. S. Seidel, and L. Kruglyak, 2006 Population genomic analysis of outcrossing and recombination in yeast. Nat. Genet. 38: 1077-1081.
29. Schacherer, J., J. A. Shapiro, D. M. Ruderfer, and L. Kruglyak, 2009 Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae. Nature 458: 342-345.
30. Smith, C. L., T. Matsumoto, O. Niwa, S. Klco, J. B. Fan et al., 1987 An electrophoretic karyotype for Schizosaccharomyces pombe by pulsed field gel electrophoresis. Nucleic Acids Res. 15: 4481-4489.
31. Todesco, M., S. Balasubramanian, T. T. Hu, M. B. Traw, M. Horton et al., 2010 Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature 465: 632-636.
32. Torabi, N., and L. Kruglyak, 2011 Variants in SUP45 and TRM10 underlie natural variation in translation termination efficiency in Saccharomyces cerevisiae. PLoS Genet. 7: e1002211.
33. Tsai, I. J., D. Bensasson, A. Burt, and V. Koufopanou, 2008 Population genomics of the wild yeast Saccharomyces paradoxus: quantifying the life cycle. Proc. Natl. Acad. Sci. USA 105: 4957-4962.
34. Warringer, J., D. Anevski, B. Liu, and A. Blomberg, 2008 Chemogenetic fingerprinting by analysis of cellular growth dynamics. BMC Chem. Biol. 8: 3.
35. Warringer, J., and A. Blomberg, 2003 Automated screening in environmental arrays allows analysis of quantitative phenotypic profiles in Saccharomyces cerevisiae. Yeast 20: 53-67.
36. Warringer, J., E. Zorgo, F. A. Cubillos, A. Zia, A. Gjuvsland et al., 2011 Trait variation in yeast is defined by population history. PLoS Genet. 7: e1002111.