-
1
-
-
84893135401
-
Profiling proteoforms: Promising follow-up of proteomics for biomarker discovery
-
Lisitsa, A.; Moshkovskii, S.; Chernobrovkin, A.; Ponomarenko, E.; Archakov, A. Profiling proteoforms: promising follow-up of proteomics for biomarker discovery Expert Rev. Proteomics 2014, 11, 121-129 10.1586/14789450.2014.878652
-
(2014)
Expert Rev. Proteomics
, vol.11
, pp. 121-129
-
-
Lisitsa, A.1
Moshkovskii, S.2
Chernobrovkin, A.3
Ponomarenko, E.4
Archakov, A.5
-
2
-
-
84894069343
-
Database construction and peptide identification strategies for proteogenomic studies on sequenced genomes
-
Hernandez, C.; Waridel, P.; Quadroni, M. Database construction and peptide identification strategies for proteogenomic studies on sequenced genomes Curr. Top. Med. Chem. 2014, 14, 425-434 10.2174/1568026613666131204105652
-
(2014)
Curr. Top. Med. Chem.
, vol.14
, pp. 425-434
-
-
Hernandez, C.1
Waridel, P.2
Quadroni, M.3
-
3
-
-
84930067094
-
Clinical protein mass spectrometry
-
Scherl, A. Clinical protein mass spectrometry Methods 2015, 81, 3 10.1016/j.ymeth.2015.02.015
-
(2015)
Methods
, vol.81
, pp. 3
-
-
Scherl, A.1
-
4
-
-
84872503060
-
Characterization of therapeutic antibodies and related products
-
Beck, A.; Wagner-Rousset, E.; Ayoub, D.; Van Dorsselaer, A.; Sanglier-Cianferani, S. Characterization of therapeutic antibodies and related products Anal. Chem. 2013, 85, 715-736 10.1021/ac3032355
-
(2013)
Anal. Chem.
, vol.85
, pp. 715-736
-
-
Beck, A.1
Wagner-Rousset, E.2
Ayoub, D.3
Van Dorsselaer, A.4
Sanglier-Cianferani, S.5
-
5
-
-
84874616206
-
Protein digestion: An overview of the available techniques and recent developments
-
Switzar, L.; Giera, M.; Niessen, W. M. Protein digestion: an overview of the available techniques and recent developments J. Proteome Res. 2013, 12, 1067-1077 10.1021/pr301201x
-
(2013)
J. Proteome Res.
, vol.12
, pp. 1067-1077
-
-
Switzar, L.1
Giera, M.2
Niessen, W.M.3
-
6
-
-
84906940191
-
A Critical Review of Trypsin Digestion for LC-MS Based Proteomics
-
Leung, H. InTech: Rijeka, Croatia
-
Hustoft, H. K.; Malerod, H.; Wilson, S. R.; Reubsaet, L.; Lundanes, E.; Greibrokk, T. A Critical Review of Trypsin Digestion for LC-MS Based Proteomics. In Integrative Proteomics; Leung, H., Ed.; InTech: Rijeka, Croatia, 2012; Vol. 1, pp 73-82.
-
(2012)
Integrative Proteomics
, vol.1
, pp. 73-82
-
-
Hustoft, H.K.1
Malerod, H.2
Wilson, S.R.3
Reubsaet, L.4
Lundanes, E.5
Greibrokk, T.6
-
7
-
-
80054732682
-
Quantitative proteomics of complex mixtures
-
Coombs, K. M. Quantitative proteomics of complex mixtures Expert Rev. Proteomics 2011, 8, 659-677 10.1586/epr.11.55
-
(2011)
Expert Rev. Proteomics
, vol.8
, pp. 659-677
-
-
Coombs, K.M.1
-
8
-
-
0142135856
-
Determination of N-glycosylation sites and site heterogeneity in glycoproteins
-
An, H. J.; Peavy, T. R.; Hedrick, J. L.; Lebrilla, C. B. Determination of N-glycosylation sites and site heterogeneity in glycoproteins Anal. Chem. 2003, 75, 5628-5637 10.1021/ac034414x
-
(2003)
Anal. Chem.
, vol.75
, pp. 5628-5637
-
-
An, H.J.1
Peavy, T.R.2
Hedrick, J.L.3
Lebrilla, C.B.4
-
9
-
-
83055168517
-
Targeted mass spectrometric approach for biomarker discovery and validation with nonglycosylated tryptic peptides from N-linked glycoproteins in human plasma
-
Lee, J. Y.; Kim, J. Y.; Park, G. W.; Cheon, M. H.; Kwon, K. H.; Ahn, Y. H.; Moon, M. H.; Lee, H. J.; Paik, Y. K.; Yoo, J. S. Targeted mass spectrometric approach for biomarker discovery and validation with nonglycosylated tryptic peptides from N-linked glycoproteins in human plasma Mol. Cell. Proteomics 2011, 10, 1-12 10.1074/mcp.M111.009290
-
(2011)
Mol. Cell. Proteomics
, vol.10
, pp. 1-12
-
-
Lee, J.Y.1
Kim, J.Y.2
Park, G.W.3
Cheon, M.H.4
Kwon, K.H.5
Ahn, Y.H.6
Moon, M.H.7
Lee, H.J.8
Paik, Y.K.9
Yoo, J.S.10
-
10
-
-
0000108345
-
The utility of nonspecific proteases in the characterization of glycoproteins by high-resolution time-of-flight mass spectrometry
-
Juhasz, P.; Martin, S. A. The utility of nonspecific proteases in the characterization of glycoproteins by high-resolution time-of-flight mass spectrometry Int. J. Mass Spectrom. Ion Processes 1997, 169-170, 217-230 10.1016/S0168-1176(97)00219-X
-
(1997)
Int. J. Mass Spectrom. Ion Processes
, vol.169-170
, pp. 217-230
-
-
Juhasz, P.1
Martin, S.A.2
-
11
-
-
84867404382
-
LC-MS analysis of glycopeptides of recombinant monoclonal antibodies by a rapid digestion procedure
-
Du, Y.; Wang, F.; May, K.; Xu, W.; Liu, H. LC-MS analysis of glycopeptides of recombinant monoclonal antibodies by a rapid digestion procedure J. Chromatogr. B: Anal. Technol. Biomed. Life Sci. 2012, 907, 87-93 10.1016/j.jchromb.2012.09.004
-
(2012)
J. Chromatogr. B: Anal. Technol. Biomed. Life Sci.
, vol.907
, pp. 87-93
-
-
Du, Y.1
Wang, F.2
May, K.3
Xu, W.4
Liu, H.5
-
12
-
-
76149084829
-
GlycoSpectrumScan: Fishing glycopeptides from MS spectra of protease digests of human colostrum sIgA
-
Deshpande, N.; Jensen, P. H.; Packer, N. H.; Kolarich, D. GlycoSpectrumScan: fishing glycopeptides from MS spectra of protease digests of human colostrum sIgA J. Proteome Res. 2010, 9, 1063-1075 10.1021/pr900956x
-
(2010)
J. Proteome Res.
, vol.9
, pp. 1063-1075
-
-
Deshpande, N.1
Jensen, P.H.2
Packer, N.H.3
Kolarich, D.4
-
13
-
-
0037474543
-
Structural analysis of human IgG-Fc glycoforms reveals a correlation between glycosylation and structural integrity
-
Krapp, S.; Mimura, Y.; Jefferis, R.; Huber, R.; Sondermann, P. Structural analysis of human IgG-Fc glycoforms reveals a correlation between glycosylation and structural integrity J. Mol. Biol. 2003, 325, 979-989 10.1016/S0022-2836(02)01250-0
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 979-989
-
-
Krapp, S.1
Mimura, Y.2
Jefferis, R.3
Huber, R.4
Sondermann, P.5
-
14
-
-
84889811290
-
Consequences of glycan truncation on Fc structural integrity
-
Buck, P. M.; Kumar, S.; Singh, S. K. Consequences of glycan truncation on Fc structural integrity MAbs 2013, 5, 904-916 10.4161/mabs.26453
-
(2013)
MAbs
, vol.5
, pp. 904-916
-
-
Buck, P.M.1
Kumar, S.2
Singh, S.K.3
-
15
-
-
2142714017
-
Monoclonal antibodies as therapeutic agents for cancer
-
Harris, M. Monoclonal antibodies as therapeutic agents for cancer Lancet Oncol. 2004, 5, 292-302 10.1016/S1470-2045(04)01467-6
-
(2004)
Lancet Oncol.
, vol.5
, pp. 292-302
-
-
Harris, M.1
-
16
-
-
31044432797
-
Use of intravenous immunoglobulin G (IVIG)
-
John Looney, R.; Huggins, J. Use of intravenous immunoglobulin G (IVIG) Best Pract Res. Clin Haematol 2006, 19, 3-25 10.1016/j.beha.2005.01.032
-
(2006)
Best Pract Res. Clin Haematol
, vol.19
, pp. 3-25
-
-
John Looney, R.1
Huggins, J.2
-
17
-
-
70349762761
-
Electrospray ionization quadrupole ion-mobility time-of-flight mass spectrometry as a tool to distinguish the lot-to-lot heterogeneity in N-glycosylation profile of the therapeutic monoclonal antibody trastuzumab
-
Damen, C. W.; Chen, W.; Chakraborty, A. B.; Oosterhout, M.; Mazzeo, J. R.; Gebler, J. C.; Schellens, J. H.; Rosing, H.; Beijnen, J. H. Electrospray ionization quadrupole ion-mobility time-of-flight mass spectrometry as a tool to distinguish the lot-to-lot heterogeneity in N-glycosylation profile of the therapeutic monoclonal antibody trastuzumab J. Am. Soc. Mass Spectrom. 2009, 20, 2021-2033 10.1016/j.jasms.2009.07.017
-
(2009)
J. Am. Soc. Mass Spectrom.
, vol.20
, pp. 2021-2033
-
-
Damen, C.W.1
Chen, W.2
Chakraborty, A.B.3
Oosterhout, M.4
Mazzeo, J.R.5
Gebler, J.C.6
Schellens, J.H.7
Rosing, H.8
Beijnen, J.H.9
-
18
-
-
84855952362
-
Fc specific IgG glycosylation profiling by robust nano-reverse phase HPLC-MS using a sheath-flow ESI sprayer interface
-
Selman, M. H.; Derks, R. J.; Bondt, A.; Palmblad, M.; Schoenmaker, B.; Koeleman, C. A.; van de Geijn, F. E.; Dolhain, R. J.; Deelder, A. M.; Wuhrer, M. Fc specific IgG glycosylation profiling by robust nano-reverse phase HPLC-MS using a sheath-flow ESI sprayer interface J. Proteomics 2012, 75, 1318-1329 10.1016/j.jprot.2011.11.003
-
(2012)
J. Proteomics
, vol.75
, pp. 1318-1329
-
-
Selman, M.H.1
Derks, R.J.2
Bondt, A.3
Palmblad, M.4
Schoenmaker, B.5
Koeleman, C.A.6
Van De Geijn, F.E.7
Dolhain, R.J.8
Deelder, A.M.9
Wuhrer, M.10
-
19
-
-
84867345063
-
A cross-platform toolkit for mass spectrometry and proteomics
-
Chambers, M. C.; Maclean, B.; Burke, R.; Amodei, D.; Ruderman, D. L.; Neumann, S.; Gatto, L.; Fischer, B.; Pratt, B.; Egertson, J.; Hoff, K.; Kessner, D.; Tasman, N.; Shulman, N.; Frewen, B.; Baker, T. A.; Brusniak, M. Y.; Paulse, C.; Creasy, D.; Flashner, L.; Kani, K.; Moulding, C.; Seymour, S. L.; Nuwaysir, L. M.; Lefebvre, B.; Kuhlmann, F.; Roark, J.; Rainer, P.; Detlev, S.; Hemenway, T.; Huhmer, A.; Langridge, J.; Connolly, B.; Chadick, T.; Holly, K.; Eckels, J.; Deutsch, E. W.; Moritz, R. L.; Katz, J. E.; Agus, D. B.; MacCoss, M.; Tabb, D. L.; Mallick, P. A cross-platform toolkit for mass spectrometry and proteomics Nat. Biotechnol. 2012, 30, 918-920 10.1038/nbt.2377
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 918-920
-
-
Chambers, M.C.1
MacLean, B.2
Burke, R.3
Amodei, D.4
Ruderman, D.L.5
Neumann, S.6
Gatto, L.7
Fischer, B.8
Pratt, B.9
Egertson, J.10
Hoff, K.11
Kessner, D.12
Tasman, N.13
Shulman, N.14
Frewen, B.15
Baker, T.A.16
Brusniak, M.Y.17
Paulse, C.18
Creasy, D.19
Flashner, L.20
Kani, K.21
Moulding, C.22
Seymour, S.L.23
Nuwaysir, L.M.24
Lefebvre, B.25
Kuhlmann, F.26
Roark, J.27
Rainer, P.28
Detlev, S.29
Hemenway, T.30
Huhmer, A.31
Langridge, J.32
Connolly, B.33
Chadick, T.34
Holly, K.35
Eckels, J.36
Deutsch, E.W.37
Moritz, R.L.38
Katz, J.E.39
Agus, D.B.40
MacCoss, M.41
Tabb, D.L.42
Mallick, P.43
more..
-
20
-
-
77954772536
-
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
-
Pluskal, T.; Castillo, S.; Villar-Briones, A.; Oresic, M. MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data BMC Bioinf. 2010, 11, 395 10.1186/1471-2105-11-395
-
(2010)
BMC Bioinf.
, vol.11
, pp. 395
-
-
Pluskal, T.1
Castillo, S.2
Villar-Briones, A.3
Oresic, M.4
-
21
-
-
0013153953
-
-
Centrum voor Wiskunde en Informatica Amsterdam: Amsterdam, The Netherlands, Technical Report CS-R9526.
-
Van Rossum, G.; Drake, Jr., F. L. Python Reference Manual; Centrum voor Wiskunde en Informatica Amsterdam: Amsterdam, The Netherlands, 1995; Technical Report CS-R9526.
-
(1995)
Python Reference Manual
-
-
Van Rossum, G.1
Drake, F.L.2
-
22
-
-
84863304598
-
-
R Foundation for Statistical Computing: Vienna, Austria
-
R Core Team. R: A Language and Environment for Statistical Computing; R Foundation for Statistical Computing: Vienna, Austria, 2012. http://www.R-project.org/.
-
(2012)
R: A Language and Environment for Statistical Computing
-
-
-
23
-
-
84910647104
-
Immunoglobulin G (IgG) Fab glycosylation analysis using a new mass spectrometric high-throughput profiling method reveals pregnancy-associated changes
-
Bondt, A.; Rombouts, Y.; Selman, M. H.; Hensbergen, P. J.; Reiding, K. R.; Hazes, J. M.; Dolhain, R. J.; Wuhrer, M. Immunoglobulin G (IgG) Fab glycosylation analysis using a new mass spectrometric high-throughput profiling method reveals pregnancy-associated changes Mol. Cell. Proteomics 2014, 13, 3029-3039 10.1074/mcp.M114.039537
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 3029-3039
-
-
Bondt, A.1
Rombouts, Y.2
Selman, M.H.3
Hensbergen, P.J.4
Reiding, K.R.5
Hazes, J.M.6
Dolhain, R.J.7
Wuhrer, M.8
-
24
-
-
84983656017
-
Comparison of methods for the analysis of therapeutic immunoglobulin G Fc-glycosylation profiles-Part 2: Mass spectrometric methods
-
Reusch, D.; Haberger, M.; Falck, D.; Peter, B.; Maier, B.; Gassner, J.; Hook, M.; Wagner, K.; Bonnington, L.; Bulau, P.; Wuhrer, M. Comparison of methods for the analysis of therapeutic immunoglobulin G Fc-glycosylation profiles-Part 2: mass spectrometric methods MAbs 2015, 7, 732 10.1080/19420862.2015.1045173
-
(2015)
MAbs
, vol.7
, pp. 732
-
-
Reusch, D.1
Haberger, M.2
Falck, D.3
Peter, B.4
Maier, B.5
Gassner, J.6
Hook, M.7
Wagner, K.8
Bonnington, L.9
Bulau, P.10
Wuhrer, M.11
-
25
-
-
0035824579
-
Role of oligosaccharide residues of IgG1-Fc in Fc gamma RIIb binding
-
Mimura, Y.; Sondermann, P.; Ghirlando, R.; Lund, J.; Young, S. P.; Goodall, M.; Jefferis, R. Role of oligosaccharide residues of IgG1-Fc in Fc gamma RIIb binding J. Biol. Chem. 2001, 276, 45539-45547 10.1074/jbc.M107478200
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 45539-45547
-
-
Mimura, Y.1
Sondermann, P.2
Ghirlando, R.3
Lund, J.4
Young, S.P.5
Goodall, M.6
Jefferis, R.7
-
26
-
-
0033044588
-
Engineered glycoforms of an antineuroblastoma IgG1 with optimized antibody-dependent cellular cytotoxic activity
-
Bailey, J. E.; Umana, P.; Jean-Mairet, J.; Moudry, R.; Amstutz, H. Engineered glycoforms of an antineuroblastoma IgG1 with optimized antibody-dependent cellular cytotoxic activity Nat. Biotechnol. 1999, 17, 176-180 10.1038/6179
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 176-180
-
-
Bailey, J.E.1
Umana, P.2
Jean-Mairet, J.3
Moudry, R.4
Amstutz, H.5
-
27
-
-
0035081693
-
The influence of glycosylation on the thermal stability and effector function expression of human IgG1-Fc: Properties of a series of truncated glycoforms
-
Mimura, Y.; Church, S.; Ghirlando, R.; Ashton, P. R.; Dong, S.; Goodall, M.; Lund, J.; Jefferis, R. The influence of glycosylation on the thermal stability and effector function expression of human IgG1-Fc: properties of a series of truncated glycoforms Mol. Immunol. 2000, 37, 697-706 10.1016/S0161-5890(00)00105-X
-
(2000)
Mol. Immunol.
, vol.37
, pp. 697-706
-
-
Mimura, Y.1
Church, S.2
Ghirlando, R.3
Ashton, P.R.4
Dong, S.5
Goodall, M.6
Lund, J.7
Jefferis, R.8
-
28
-
-
84918825382
-
IgG subclasses and allotypes: From structure to effector functions
-
Vidarsson, G.; Dekkers, G.; Rispens, T. IgG subclasses and allotypes: from structure to effector functions Front. Immunol. 2014, 5, 520 10.3389/fimmu.2014.00520
-
(2014)
Front. Immunol.
, vol.5
, pp. 520
-
-
Vidarsson, G.1
Dekkers, G.2
Rispens, T.3
-
29
-
-
84904253899
-
Diversity in structure and functions of antibody sialylation in the Fc
-
Raju, T. S.; Lang, S. E. Diversity in structure and functions of antibody sialylation in the Fc Curr. Opin. Biotechnol. 2014, 30, 147-152 10.1016/j.copbio.2014.06.014
-
(2014)
Curr. Opin. Biotechnol.
, vol.30
, pp. 147-152
-
-
Raju, T.S.1
Lang, S.E.2
-
30
-
-
84864129235
-
Databases and tools in glycobiology
-
Artemenko, N. V.; McDonald, A. G.; Davey, G. P.; Rudd, P. M. Databases and tools in glycobiology Methods Mol. Biol. 2012, 899, 325-350 10.1007/978-1-61779-921-1-21
-
(2012)
Methods Mol. Biol.
, vol.899
, pp. 325-350
-
-
Artemenko, N.V.1
McDonald, A.G.2
Davey, G.P.3
Rudd, P.M.4
|