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Volumn 1850, Issue 11, 2015, Pages 2318-2328

Fluorescent ratiometric pH indicator SypHer2: Applications in neuroscience and regenerative biology

(12)  Matlashov, Mikhail E a,b   Bogdanova, Yulia A a,c   Ermakova, Galina V a   Mishina, Natalia M a,b   Ermakova, Yulia G a   Nikitin, Evgeny S d   Balaban, Pavel M d   Okabe, Shigeo e   Lukyanov, Sergey a,b   Enikolopov, Grigori f,g,h,i   Zaraisky, Andrey G a   Belousov, Vsevolod V a,b  


Author keywords

Genetically encoded sensors; Imaging; Neurons; pH; Regeneration; Synapse; SypHer2

Indexed keywords

CALCIUM ION; CALCIUM;

EID: 84940937253     PISSN: 03044165     EISSN: 18728006     Source Type: Journal    
DOI: 10.1016/j.bbagen.2015.08.002     Document Type: Article
Times cited : (75)

References (55)
  • 1
    • 59849109889 scopus 로고    scopus 로고
    • Green fluorescent protein based pH indicators for in vivo use: A review
    • R. Bizzarri, M. Serresi, S. Luin, and F. Beltram Green fluorescent protein based pH indicators for in vivo use: a review Anal. Bioanal. Chem. 393 2009 1107 1122
    • (2009) Anal. Bioanal. Chem. , vol.393 , pp. 1107-1122
    • Bizzarri, R.1    Serresi, M.2    Luin, S.3    Beltram, F.4
  • 2
    • 77952478476 scopus 로고    scopus 로고
    • Fluorescent indicators for intracellular pH
    • J. Han, and K. Burgess Fluorescent indicators for intracellular pH Chem. Rev. 110 2010 2709 2728
    • (2010) Chem. Rev. , vol.110 , pp. 2709-2728
    • Han, J.1    Burgess, K.2
  • 3
    • 84889572094 scopus 로고    scopus 로고
    • Illumination of the spatial order of intracellular pH by genetically encoded pH-sensitive sensors
    • M. Bencina Illumination of the spatial order of intracellular pH by genetically encoded pH-sensitive sensors Sensors (Basel) 13 2013 16736 16758
    • (2013) Sensors (Basel) , vol.13 , pp. 16736-16758
    • Bencina, M.1
  • 5
    • 0025037194 scopus 로고
    • Application of a new pH-sensitive fluoroprobe (carboxy-SNARF-1) for intracellular pH measurement in small, isolated cells
    • K.J. Buckler, and R.D. Vaughan-Jones Application of a new pH-sensitive fluoroprobe (carboxy-SNARF-1) for intracellular pH measurement in small, isolated cells Pflugers Arch. - Eur. J. Physiol. 417 1990 234 239
    • (1990) Pflugers Arch. - Eur. J. Physiol. , vol.417 , pp. 234-239
    • Buckler, K.J.1    Vaughan-Jones, R.D.2
  • 6
    • 0033803597 scopus 로고    scopus 로고
    • The use of pHluorins for optical measurements of presynaptic activity
    • S. Sankaranarayanan, D. De Angelis, J.E. Rothman, and T.A. Ryan The use of pHluorins for optical measurements of presynaptic activity Biophys. J. 79 2000 2199 2208
    • (2000) Biophys. J. , vol.79 , pp. 2199-2208
    • Sankaranarayanan, S.1    De Angelis, D.2    Rothman, J.E.3    Ryan, T.A.4
  • 8
    • 33646140570 scopus 로고    scopus 로고
    • Development of a novel GFP-based ratiometric excitation and emission pH indicator for intracellular studies
    • R. Bizzarri, C. Arcangeli, D. Arosio, F. Ricci, P. Faraci, F. Cardarelli, and F. Beltram Development of a novel GFP-based ratiometric excitation and emission pH indicator for intracellular studies Biophys. J. 90 2006 3300 3314
    • (2006) Biophys. J. , vol.90 , pp. 3300-3314
    • Bizzarri, R.1    Arcangeli, C.2    Arosio, D.3    Ricci, F.4    Faraci, P.5    Cardarelli, F.6    Beltram, F.7
  • 9
    • 79959870658 scopus 로고    scopus 로고
    • Imaging intracellular pH in live cells with a genetically encoded red fluorescent protein sensor
    • M. Tantama, Y.P. Hung, and G. Yellen Imaging intracellular pH in live cells with a genetically encoded red fluorescent protein sensor J. Am. Chem. Soc. 133 2011 10034 10037
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 10034-10037
    • Tantama, M.1    Hung, Y.P.2    Yellen, G.3
  • 10
    • 84862872612 scopus 로고    scopus 로고
    • PHTomato, a red, genetically encoded indicator that enables multiplex interrogation of synaptic activity
    • Y. Li, and R.W. Tsien pHTomato, a red, genetically encoded indicator that enables multiplex interrogation of synaptic activity Nat. Neurosci. 15 2012 1047 1053
    • (2012) Nat. Neurosci. , vol.15 , pp. 1047-1053
    • Li, Y.1    Tsien, R.W.2
  • 11
    • 33750102278 scopus 로고    scopus 로고
    • Intracellular pH measurements in vivo using green fluorescent protein variants
    • K. Nehrke Intracellular pH measurements in vivo using green fluorescent protein variants Methods Mol. Biol. 351 2006 223 239
    • (2006) Methods Mol. Biol. , vol.351 , pp. 223-239
    • Nehrke, K.1
  • 12
    • 79952412095 scopus 로고    scopus 로고
    • Dynamic regulation of the mitochondrial proton gradient during cytosolic calcium elevations
    • D. Poburko, J. Santo-Domingo, and N. Demaurex Dynamic regulation of the mitochondrial proton gradient during cytosolic calcium elevations J. Biol. Chem. 286 2011 11672 11684
    • (2011) J. Biol. Chem. , vol.286 , pp. 11672-11684
    • Poburko, D.1    Santo-Domingo, J.2    Demaurex, N.3
  • 16
    • 0030951604 scopus 로고    scopus 로고
    • Regulation of intracellular sodium in cultured rat hippocampal neurones
    • C.R. Rose, and B.R. Ransom Regulation of intracellular sodium in cultured rat hippocampal neurones J. Physiol. 499 Pt 3 1997 573 587
    • (1997) J. Physiol. , vol.499 , pp. 573-587
    • Rose, C.R.1    Ransom, B.R.2
  • 18
    • 84865961091 scopus 로고    scopus 로고
    • Synaptic energy use and supply
    • J.J. Harris, R. Jolivet, and D. Attwell Synaptic energy use and supply Neuron 75 2012 762 777
    • (2012) Neuron , vol.75 , pp. 762-777
    • Harris, J.J.1    Jolivet, R.2    Attwell, D.3
  • 19
    • 0029858552 scopus 로고    scopus 로고
    • Acidosis of rat dorsal vagal neurons in situ during spontaneous and evoked activity
    • S. Trapp, M. Luckermann, P.A. Brooks, and K. Ballanyi Acidosis of rat dorsal vagal neurons in situ during spontaneous and evoked activity J. Physiol. 496 Pt 3 1996 695 710
    • (1996) J. Physiol. , vol.496 , Issue.PT 3 , pp. 695-710
    • Trapp, S.1    Luckermann, M.2    Brooks, P.A.3    Ballanyi, K.4
  • 21
    • 0032696311 scopus 로고    scopus 로고
    • Novel role of the Ca(2 +)-ATPase in NMDA-induced intracellular acidification
    • M.L. Wu, J.H. Chen, W.H. Chen, Y.J. Chen, and K.C. Chu Novel role of the Ca(2 +)-ATPase in NMDA-induced intracellular acidification Am. J. Physiol. 277 1999 C717 727
    • (1999) Am. J. Physiol. , vol.277 , pp. C717-727
    • Wu, M.L.1    Chen, J.H.2    Chen, W.H.3    Chen, Y.J.4    Chu, K.C.5
  • 23
    • 0026598322 scopus 로고
    • Influence of extracellular and intracellular pH on GABA-gated chloride conductance in crayfish muscle fibres
    • M. Pasternack, C. Bountra, J. Voipio, and K. Kaila Influence of extracellular and intracellular pH on GABA-gated chloride conductance in crayfish muscle fibres Neuroscience 47 1992 921 929
    • (1992) Neuroscience , vol.47 , pp. 921-929
    • Pasternack, M.1    Bountra, C.2    Voipio, J.3    Kaila, K.4
  • 25
    • 0032523020 scopus 로고    scopus 로고
    • Regulation of presynaptic NMDA responses by external and intracellular pH changes at developing neuromuscular synapses
    • Y.H. Chen, M.L. Wu, and W.M. Fu Regulation of presynaptic NMDA responses by external and intracellular pH changes at developing neuromuscular synapses J. Neurosci. 18 1998 2982 2990
    • (1998) J. Neurosci. , vol.18 , pp. 2982-2990
    • Chen, Y.H.1    Wu, M.L.2    Fu, W.M.3
  • 27
    • 0034652229 scopus 로고    scopus 로고
    • Activity-dependent intracellular acidification correlates with the duration of seizure activity
    • Z.Q. Xiong, P. Saggau, and J.L. Stringer Activity-dependent intracellular acidification correlates with the duration of seizure activity J. Neurosci. 20 2000 1290 1296
    • (2000) J. Neurosci. , vol.20 , pp. 1290-1296
    • Xiong, Z.Q.1    Saggau, P.2    Stringer, J.L.3
  • 28
    • 84861084203 scopus 로고    scopus 로고
    • Examining form and function of dendritic spines
    • K.F. Lee, C. Soares, and J.C. Beique Examining form and function of dendritic spines Neural Plast. 2012 2012 704103
    • (2012) Neural Plast. , vol.2012 , pp. 704103
    • Lee, K.F.1    Soares, C.2    Beique, J.C.3
  • 29
    • 34248195467 scopus 로고    scopus 로고
    • + pump-dependent changes in membrane voltage are an early mechanism necessary and sufficient to induce Xenopus tail regeneration
    • + pump-dependent changes in membrane voltage are an early mechanism necessary and sufficient to induce Xenopus tail regeneration Development 134 2007 1323 1335
    • (2007) Development , vol.134 , pp. 1323-1335
    • Adams, D.S.1    Masi, A.2    Levin, M.3
  • 30
    • 84866174537 scopus 로고    scopus 로고
    • Transducing bioelectric signals into epigenetic pathways during tadpole tail regeneration
    • A.S. Tseng, and M. Levin Transducing bioelectric signals into epigenetic pathways during tadpole tail regeneration Anat. Rec. 295 2012 1541 1551
    • (2012) Anat. Rec. , vol.295 , pp. 1541-1551
    • Tseng, A.S.1    Levin, M.2
  • 31
    • 52649162842 scopus 로고    scopus 로고
    • Tail regeneration in Xenopus laevis as a model for understanding tissue repair
    • A.S. Tseng, and M. Levin Tail regeneration in Xenopus laevis as a model for understanding tissue repair J. Dent. Res. 87 2008 806 816
    • (2008) J. Dent. Res. , vol.87 , pp. 806-816
    • Tseng, A.S.1    Levin, M.2
  • 32
    • 0035894874 scopus 로고    scopus 로고
    • Rapid redistribution of the postsynaptic density protein PSD-Zip45 (Homer 1c) and its differential regulation by NMDA receptors and calcium channels
    • S. Okabe, T. Urushido, D. Konno, H. Okado, and K. Sobue Rapid redistribution of the postsynaptic density protein PSD-Zip45 (Homer 1c) and its differential regulation by NMDA receptors and calcium channels J. Neurosci. 21 2001 9561 9571
    • (2001) J. Neurosci. , vol.21 , pp. 9561-9571
    • Okabe, S.1    Urushido, T.2    Konno, D.3    Okado, H.4    Sobue, K.5
  • 33
    • 0035882395 scopus 로고    scopus 로고
    • Spine formation and correlated assembly of presynaptic and postsynaptic molecules
    • S. Okabe, A. Miwa, and H. Okado Spine formation and correlated assembly of presynaptic and postsynaptic molecules J. Neurosci. 21 2001 6105 6114
    • (2001) J. Neurosci. , vol.21 , pp. 6105-6114
    • Okabe, S.1    Miwa, A.2    Okado, H.3
  • 34
    • 84868237293 scopus 로고    scopus 로고
    • Isolation and culture of hippocampal neurons from prenatal mice
    • M.L. Seibenhener, and M.W. Wooten Isolation and culture of hippocampal neurons from prenatal mice J. Vis. Exp. 65 2012 3634
    • (2012) J. Vis. Exp. , vol.65 , pp. 3634
    • Seibenhener, M.L.1    Wooten, M.W.2
  • 35
    • 34347205679 scopus 로고    scopus 로고
    • The homeodomain factor Xanf represses expression of genes in the presumptive rostral forebrain that specify more caudal brain regions
    • G.V. Ermakova, E.A. Solovieva, N.Y. Martynova, and A.G. Zaraisky The homeodomain factor Xanf represses expression of genes in the presumptive rostral forebrain that specify more caudal brain regions Dev. Biol. 307 2007 483 497
    • (2007) Dev. Biol. , vol.307 , pp. 483-497
    • Ermakova, G.V.1    Solovieva, E.A.2    Martynova, N.Y.3    Zaraisky, A.G.4
  • 37
    • 0037082234 scopus 로고    scopus 로고
    • Depolarization-induced pH microdomains and their relationship to calcium transients in isolated snail neurones
    • C.J. Schwiening, and D. Willoughby Depolarization-induced pH microdomains and their relationship to calcium transients in isolated snail neurones J. Physiol. 538 2002 371 382
    • (2002) J. Physiol. , vol.538 , pp. 371-382
    • Schwiening, C.J.1    Willoughby, D.2
  • 38
    • 79956323681 scopus 로고    scopus 로고
    • Preemptive regulation of intracellular pH in hippocampal neurons by a dual mechanism of depolarization-induced alkalinization
    • N. Svichar, S. Esquenazi, H.Y. Chen, and M. Chesler Preemptive regulation of intracellular pH in hippocampal neurons by a dual mechanism of depolarization-induced alkalinization J. Neurosci. 31 2011 6997 7004
    • (2011) J. Neurosci. , vol.31 , pp. 6997-7004
    • Svichar, N.1    Esquenazi, S.2    Chen, H.Y.3    Chesler, M.4
  • 39
    • 0037107388 scopus 로고    scopus 로고
    • Electrically evoked dendritic pH transients in rat cerebellar Purkinje cells
    • D. Willoughby, and C.J. Schwiening Electrically evoked dendritic pH transients in rat cerebellar Purkinje cells J. Physiol. 544 2002 487 499
    • (2002) J. Physiol. , vol.544 , pp. 487-499
    • Willoughby, D.1    Schwiening, C.J.2
  • 40
    • 84894150737 scopus 로고    scopus 로고
    • Activity-driven local ATP synthesis is required for synaptic function
    • V. Rangaraju, N. Calloway, and T.A. Ryan Activity-driven local ATP synthesis is required for synaptic function Cell 156 2014 825 835
    • (2014) Cell , vol.156 , pp. 825-835
    • Rangaraju, V.1    Calloway, N.2    Ryan, T.A.3
  • 41
    • 33745454023 scopus 로고    scopus 로고
    • Dissociated cortical networks show spontaneously correlated activity patterns during in vitro development
    • M. Chiappalone, M. Bove, A. Vato, M. Tedesco, and S. Martinoia Dissociated cortical networks show spontaneously correlated activity patterns during in vitro development Brain Res. 1093 2006 41 53
    • (2006) Brain Res. , vol.1093 , pp. 41-53
    • Chiappalone, M.1    Bove, M.2    Vato, A.3    Tedesco, M.4    Martinoia, S.5
  • 43
  • 44
    • 0037444571 scopus 로고    scopus 로고
    • Synchronized formation and remodeling of postsynaptic densities: Long-term visualization of hippocampal neurons expressing postsynaptic density proteins tagged with green fluorescent protein
    • T. Ebihara, I. Kawabata, S. Usui, K. Sobue, and S. Okabe Synchronized formation and remodeling of postsynaptic densities: long-term visualization of hippocampal neurons expressing postsynaptic density proteins tagged with green fluorescent protein J. Neurosci. 23 2003 2170 2181
    • (2003) J. Neurosci. , vol.23 , pp. 2170-2181
    • Ebihara, T.1    Kawabata, I.2    Usui, S.3    Sobue, K.4    Okabe, S.5
  • 45
    • 0042196121 scopus 로고    scopus 로고
    • Molecular pathways needed for regeneration of spinal cord and muscle in a vertebrate
    • C.W. Beck, B. Christen, and J.M. Slack Molecular pathways needed for regeneration of spinal cord and muscle in a vertebrate Dev. Cell 5 2003 429 439
    • (2003) Dev. Cell , vol.5 , pp. 429-439
    • Beck, C.W.1    Christen, B.2    Slack, J.M.3
  • 46
    • 84858977397 scopus 로고    scopus 로고
    • PHluorin2: An enhanced, ratiometric, pH-sensitive green florescent protein
    • M.J. Mahon pHluorin2: an enhanced, ratiometric, pH-sensitive green florescent protein Adv. Biosci. Biotechnol. 2 2011 132 137
    • (2011) Adv. Biosci. Biotechnol. , vol.2 , pp. 132-137
    • Mahon, M.J.1
  • 47
    • 0032500053 scopus 로고    scopus 로고
    • Visualizing secretion and synaptic transmission with pH-sensitive green fluorescent proteins
    • G. Miesenbock, D.A. De Angelis, and J.E. Rothman Visualizing secretion and synaptic transmission with pH-sensitive green fluorescent proteins Nature 394 1998 192 195
    • (1998) Nature , vol.394 , pp. 192-195
    • Miesenbock, G.1    De Angelis, D.A.2    Rothman, J.E.3
  • 48
    • 84979855532 scopus 로고    scopus 로고
    • The Axon CNS Guide to Electrophysiology & Biophysics Laboratory Techniques
    • M.D. Corporation The Axon CNS Guide to Electrophysiology & Biophysics Laboratory Techniques Molecular devices, Union City 2006
    • (2006) Molecular Devices, Union City
    • Corporation, M.D.1
  • 49
    • 0036241207 scopus 로고    scopus 로고
    • Extrasynaptic NMDARs oppose synaptic NMDARs by triggering CREB shut-off and cell death pathways
    • G.E. Hardingham, Y. Fukunaga, and H. Bading Extrasynaptic NMDARs oppose synaptic NMDARs by triggering CREB shut-off and cell death pathways Nat. Neurosci. 5 2002 405 414
    • (2002) Nat. Neurosci. , vol.5 , pp. 405-414
    • Hardingham, G.E.1    Fukunaga, Y.2    Bading, H.3
  • 50
    • 0024473444 scopus 로고
    • Dendritic spines of CA 1 pyramidal cells in the rat hippocampus: Serial electron microscopy with reference to their biophysical characteristics
    • K.M. Harris, and J.K. Stevens Dendritic spines of CA 1 pyramidal cells in the rat hippocampus: serial electron microscopy with reference to their biophysical characteristics J. Neurosci. 9 1989 2982 2997
    • (1989) J. Neurosci. , vol.9 , pp. 2982-2997
    • Harris, K.M.1    Stevens, J.K.2
  • 51
    • 84965080914 scopus 로고    scopus 로고
    • Light-activation of the Archaerhodopsin H(+)-pump reverses age-dependent loss of vertebrate regeneration: Sparking system-level controls in vivo
    • D.S. Adams, A.S. Tseng, and M. Levin Light-activation of the Archaerhodopsin H(+)-pump reverses age-dependent loss of vertebrate regeneration: sparking system-level controls in vivo Biol. Open 2 2013 306 313
    • (2013) Biol. Open , vol.2 , pp. 306-313
    • Adams, D.S.1    Tseng, A.S.2    Levin, M.3
  • 52
    • 67649255876 scopus 로고    scopus 로고
    • A tissue-scale gradient of hydrogen peroxide mediates rapid wound detection in zebrafish
    • P. Niethammer, C. Grabher, A.T. Look, and T.J. Mitchison A tissue-scale gradient of hydrogen peroxide mediates rapid wound detection in zebrafish Nature 459 2009 996 999
    • (2009) Nature , vol.459 , pp. 996-999
    • Niethammer, P.1    Grabher, C.2    Look, A.T.3    Mitchison, T.J.4
  • 54
    • 0031931397 scopus 로고    scopus 로고
    • The role of intracellular alkalinization in the establishment of anterior neural fate in Xenopus
    • J.A. Uzman, S. Patil, A.R. Uzgare, and A.K. Sater The role of intracellular alkalinization in the establishment of anterior neural fate in Xenopus Dev. Biol. 193 1998 10 20
    • (1998) Dev. Biol. , vol.193 , pp. 10-20
    • Uzman, J.A.1    Patil, S.2    Uzgare, A.R.3    Sater, A.K.4


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