메뉴 건너뛰기




Volumn 290, Issue 31, 2015, Pages 19273-19286

Evidence that antibiotics bind to human mitochondrial ribosomal RNA has implications for aminoglycoside toxicity

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; BIOSYNTHESIS; DISSOCIATION; ESCHERICHIA COLI; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; RNA; STABILITY; TOXICITY;

EID: 84940705095     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M115.655092     Document Type: Article
Times cited : (33)

References (72)
  • 1
    • 0035032997 scopus 로고    scopus 로고
    • Structural basis for selectivity and toxicity of ribosomal antibiotics
    • Böttger, E. C., Springer, B., Prammananan, T., Kidan, Y., and Sander, P. (2001) Structural basis for selectivity and toxicity of ribosomal antibiotics. EMBO Rep. 2, 318-323
    • (2001) EMBO Rep. , vol.2 , pp. 318-323
    • Böttger, E.C.1    Springer, B.2    Prammananan, T.3    Kidan, Y.4    Sander, P.5
  • 2
    • 0035830952 scopus 로고    scopus 로고
    • Structural origins of aminoglycoside specificity for prokaryotic ribosomes
    • Lynch, S. R., and Puglisi, J. D. (2001) Structural origins of aminoglycoside specificity for prokaryotic ribosomes. J. Mol. Biol. 306, 1037-1058
    • (2001) J. Mol. Biol. , vol.306 , pp. 1037-1058
    • Lynch, S.R.1    Puglisi, J.D.2
  • 3
    • 14844348264 scopus 로고    scopus 로고
    • Molecular insights into aminoglycoside action and resistance
    • Magnet, S., and Blanchard, J. (2005) Molecular insights into aminoglycoside action and resistance. Chem. Rev. 105, 477-498
    • (2005) Chem. Rev. , vol.105 , pp. 477-498
    • Magnet, S.1    Blanchard, J.2
  • 4
    • 0023238983 scopus 로고
    • Interaction of antibiotics with functional sites in 16S ribosomal RNA
    • Moazed, D., and Noller, H. F. (1987) Interaction of antibiotics with functional sites in 16S ribosomal RNA. Nature 327, 389-394
    • (1987) Nature , vol.327 , pp. 389-394
    • Moazed, D.1    Noller, H.F.2
  • 5
    • 0025799785 scopus 로고
    • Interaction of antibiotics with A- and P-site-specific bases in 16S ribosomal RNA
    • Woodcock, J., Moazed, D., Cannon, M., Davies, J., and Noller, H. F. (1991) Interaction of antibiotics with A- and P-site-specific bases in 16S ribosomal RNA. EMBO J. 10, 3099-3103
    • (1991) EMBO J , vol.10 , pp. 3099-3103
    • Woodcock, J.1    Moazed, D.2    Cannon, M.3    Davies, J.4    Noller, H.F.5
  • 6
    • 84872533264 scopus 로고    scopus 로고
    • Aminoglycoside antibiotics in the 21st century
    • Becker, B., and Cooper, M. A. (2013) Aminoglycoside antibiotics in the 21st century. ACS Chem. Biol. 8, 105-115
    • (2013) ACS Chem. Biol. , vol.8 , pp. 105-115
    • Becker, B.1    Cooper, M.A.2
  • 7
    • 0014429801 scopus 로고
    • Misreading of ribonucleic acid code words induced by aminoglycoside antibiotics. The effect of drug concentration
    • Davies, J., and Davis, B. (1968) Misreading of ribonucleic acid code words induced by aminoglycoside antibiotics. The effect of drug concentration. J. Biol. Chem. 243, 3312-3316
    • (1968) J. Biol. Chem. , vol.243 , pp. 3312-3316
    • Davies, J.1    Davis, B.2
  • 8
    • 18844413446 scopus 로고    scopus 로고
    • Structural insights into translational fidelity
    • Ogle, J. M., and Ramakrishnan, V. (2005) Structural insights into translational fidelity. Annu. Rev. Biochem. 74, 129-177
    • (2005) Annu. Rev. Biochem. , vol.74 , pp. 129-177
    • Ogle, J.M.1    Ramakrishnan, V.2
  • 9
    • 0018074144 scopus 로고
    • Apramycin, a new aminocyclitol antibiotic. I. In vitro microbiological studies
    • Walton, J. R. (1978) Apramycin, a new aminocyclitol antibiotic. I. In vitro microbiological studies. J. Antimicrob. Chemother. 4, 309-313
    • (1978) J. Antimicrob. Chemother. , vol.4 , pp. 309-313
    • Walton, J.R.1
  • 10
    • 33846632548 scopus 로고
    • Critical tests of hygromycin B as an ascaricide of swine
    • Kelley, G. W., and Olsen, L. S. (1960) Critical tests of hygromycin B as an ascaricide of swine. Cornell Vet. 50, 60-65
    • (1960) Cornell Vet. , vol.50 , pp. 60-65
    • Kelley, G.W.1    Olsen, L.S.2
  • 11
    • 0016589493 scopus 로고
    • Efficacy of lincomycin and spectinomycin on canine pathogens
    • Hamdy, A. H. (1975) Efficacy of lincomycin and spectinomycin on canine pathogens. Lab. Anim. Sci. 25, 570-574
    • (1975) Lab. Anim. Sci. , vol.25 , pp. 570-574
    • Hamdy, A.H.1
  • 13
    • 77955242816 scopus 로고    scopus 로고
    • A model for the study of ligand binding to the ribosomal RNA helix h44
    • Dibrov, S. M., Parsons, J., and Hermann, T. (2010) A model for the study of ligand binding to the ribosomal RNA helix h44. Nucleic Acids Res. 38, 4458-4465
    • (2010) Nucleic Acids Res. , vol.38 , pp. 4458-4465
    • Dibrov, S.M.1    Parsons, J.2    Hermann, T.3
  • 16
    • 84871796325 scopus 로고    scopus 로고
    • In vivo multiphoton imaging of mitochondrial structure and function during acute kidney injury
    • Hall, A. M., Rhodes, G. J., Sandoval, R. M., Corridon, P. R., and Molitoris, B. A. (2013) In vivo multiphoton imaging of mitochondrial structure and function during acute kidney injury. Kidney Int. 83, 72-83
    • (2013) Kidney Int. , vol.83 , pp. 72-83
    • Hall, A.M.1    Rhodes, G.J.2    Sandoval, R.M.3    Corridon, P.R.4    Molitoris, B.A.5
  • 17
    • 0028348009 scopus 로고
    • Ototoxicity in vitro: Effects of neomycin, gentamicin, dihydrostreptomycin, amikacin, spectinomycin, neamine, spermine and poly-L-lysine
    • Kotecha, B., and Richardson, G. P. (1994) Ototoxicity in vitro: effects of neomycin, gentamicin, dihydrostreptomycin, amikacin, spectinomycin, neamine, spermine and poly-L-lysine. Hear. Res. 73, 173-184
    • (1994) Hear. Res. , vol.73 , pp. 173-184
    • Kotecha, B.1    Richardson, G.P.2
  • 24
    • 0014014591 scopus 로고
    • Toxicity of kanamycin in adults
    • Finegold, S. M. (1966) Toxicity of kanamycin in adults. Ann. N. Y. Acad. Sci. 132, 942-956
    • (1966) Ann. N. Y. Acad. Sci. , vol.132 , pp. 942-956
    • Finegold, S.M.1
  • 27
    • 0037350503 scopus 로고    scopus 로고
    • Gentamicin may have an adverse effect on osteogenesis
    • Isefuku, S., Joyner, C. J., and Simpson, A. H. (2003) Gentamicin may have an adverse effect on osteogenesis. J. Orthop. Trauma 17, 212-216
    • (2003) J. Orthop. Trauma , vol.17 , pp. 212-216
    • Isefuku, S.1    Joyner, C.J.2    Simpson, A.H.3
  • 30
    • 0039864579 scopus 로고
    • Botulism
    • (Greene, C. E. ed.), Saunders, Philadelphia
    • Barsanti, J. A. (1990) Botulism. in Infectious Diseases of the Dog and Cat (Greene, C. E. ed.), pp. 515-520, Saunders, Philadelphia
    • (1990) Infectious Diseases of the Dog and Cat , pp. 515-520
    • Barsanti, J.A.1
  • 32
    • 0034657608 scopus 로고    scopus 로고
    • Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA
    • Meroueh, M., Grohar, P. J., Qiu, J., SantaLucia, J., Jr., Scaringe, S. A., and Chow, C. S. (2000) Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA. Nucleic Acids Res. 28, 2075-2083
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2075-2083
    • Meroueh, M.1    Grohar, P.J.2    Qiu, J.3    SantaLucia, J.4    Scaringe, S.A.5    Chow, C.S.6
  • 33
    • 24044454056 scopus 로고    scopus 로고
    • Effects of nucleotide substitution and modification on the stability and structure of helix 69 from 28S rRNA
    • Sumita, M., Desaulniers, J. P, Chang, Y. C, Chui, H. M., Clos, L., 2nd, and Chow, C. S. (2005) Effects of nucleotide substitution and modification on the stability and structure of helix 69 from 28S rRNA. RNA 11, 1420-1429
    • (2005) RNA , vol.11 , pp. 1420-1429
    • Sumita, M.1    Desaulniers, J.P.2    Chang, Y.C.3    Chui, H.M.4    Clos, L.5    Chow, C.S.6
  • 37
    • 84885818229 scopus 로고    scopus 로고
    • High-resolution reversible folding of hyperstable RNA tetraloops using molecular dynamics simulations
    • Chen, A. A., and García, A. E. (2013) High-resolution reversible folding of hyperstable RNA tetraloops using molecular dynamics simulations. Proc. Natl. Acad. Sci. U.S.A. 110, 16820-16825
    • (2013) Proc. Natl. Acad. Sci. U.S.A. , vol.110 , pp. 16820-16825
    • Chen, A.A.1    García, A.E.2
  • 38
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
    • Gutell, R. R., Larsen, N., and Woese, C. R. (1994) Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol. Rev. 58, 10-26
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.R.3
  • 39
    • 0025047647 scopus 로고
    • Architecture of ribosomal RNA: Constraints on the sequence of "tetra-loops"
    • Woese, C. R., Winker, S., and Gutell, R. R. (1990) Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops". Proc. Natl. Acad. Sci. U.S.A. 87, 8467-8471
    • (1990) Proc. Natl. Acad. Sci. U.S.A. , vol.87 , pp. 8467-8471
    • Woese, C.R.1    Winker, S.2    Gutell, R.R.3
  • 41
    • 0029805937 scopus 로고    scopus 로고
    • 2 by two-dimensional NMR and simulated annealing
    • 2 by two-dimensional NMR and simulated annealing. Biochemistry 35, 14077-14089
    • (1996) Biochemistry , vol.35 , pp. 14077-14089
    • McDowell, J.A.1    Turner, D.H.2
  • 42
    • 43049175080 scopus 로고    scopus 로고
    • Characterization of tertiary folding of RNA by circular dichroism and urea
    • Chapter 11, Unit 11.5, John Wiley & Sons, Inc
    • Sosnick, T. R. (2001) Characterization of tertiary folding of RNA by circular dichroism and urea. Curr. Protoc. Nucleic Acid Chem. Chapter 11, Unit 11.5, John Wiley & Sons, Inc., 10.1002/0471142700.nc1105s04
    • (2001) Curr. Protoc. Nucleic Acid Chem.
    • Sosnick, T.R.1
  • 43
    • 79960698472 scopus 로고
    • Water suppression that works: Excitation sculpting using arbitrary wave-forms and pulsed-field gradients
    • Hwang, T. L., and Shaka, A. J. (1995) Water suppression that works: excitation sculpting using arbitrary wave-forms and pulsed-field gradients. J. Magn. Reson. Series A. 112, 275-279
    • (1995) J. Magn. Reson. Series A. , vol.112 , pp. 275-279
    • Hwang, T.L.1    Shaka, A.J.2
  • 44
    • 0029400480 scopus 로고
    • NMRPipe: A multidimensional spectral processing system based on UNIX pipes
    • Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6, 277-293
    • (1995) J. Biomol. NMR , vol.6 , pp. 277-293
    • Delaglio, F.1    Grzesiek, S.2    Vuister, G.W.3    Zhu, G.4    Pfeifer, J.5    Bax, A.6
  • 45
    • 4644259437 scopus 로고    scopus 로고
    • Using NMRView to visualize and analyze the NMR spectra of macromolecules
    • Johnson, B. A. (2004) Using NMRView to visualize and analyze the NMR spectra of macromolecules. Methods Mol. Biol. 278, 313-352
    • (2004) Methods Mol. Biol. , vol.278 , pp. 313-352
    • Johnson, B.A.1
  • 46
    • 0037129948 scopus 로고    scopus 로고
    • Thermodynamics of aminoglycosider-RNA recognition: The binding of neomycin-class aminoglycosides to the A site of 16S rRNA
    • Kaul, M., and Pilch, D. S. (2002) Thermodynamics of aminoglycosider-RNA recognition: the binding of neomycin-class aminoglycosides to the A site of 16S rRNA. Biochemistry 41, 7695-7706
    • (2002) Biochemistry , vol.41 , pp. 7695-7706
    • Kaul, M.1    Pilch, D.S.2
  • 47
    • 43149103943 scopus 로고    scopus 로고
    • Targeting RNA with small molecules
    • Thomas, J. R., and Hergenrother, P. J. (2008) Targeting RNA with small molecules. Chem. Rev. 108, 1171-1224
    • (2008) Chem. Rev. , vol.108 , pp. 1171-1224
    • Thomas, J.R.1    Hergenrother, P.J.2
  • 50
    • 0344142531 scopus 로고    scopus 로고
    • Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G·U wobble base pair at 1.16 Å resolution
    • Mueller, U., Schübel, H., Sprinzl, M., and Heinemann, U. (1999) Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G·U wobble base pair at 1.16 Å resolution. RNA 5, 670-677
    • (1999) RNA , vol.5 , pp. 670-677
    • Mueller, U.1    Schübel, H.2    Sprinzl, M.3    Heinemann, U.4
  • 51
    • 0031051477 scopus 로고    scopus 로고
    • Specificity of aminoglycoside binding to RNA constructs derived from the 16S rRNA decoding region and the HIV-RRE activator region
    • Wang, Y., Hamasaki, K., and Rando, R. R. (1997) Specificity of aminoglycoside binding to RNA constructs derived from the 16S rRNA decoding region and the HIV-RRE activator region. Biochemistry 36, 768-779
    • (1997) Biochemistry , vol.36 , pp. 768-779
    • Wang, Y.1    Hamasaki, K.2    Rando, R.R.3
  • 52
    • 84870669523 scopus 로고    scopus 로고
    • Mitochondrial protein synthesis, import, and assembly
    • Fox, T. D. (2012) Mitochondrial protein synthesis, import, and assembly. Genetics 192, 1203-1234
    • (2012) Genetics , vol.192 , pp. 1203-1234
    • Fox, T.D.1
  • 54
    • 0028436180 scopus 로고
    • Protein synthesis in mitochondria
    • Pel, H. J., and Grivell, L. A. (1994) Protein synthesis in mitochondria. Mol. Biol. Rep. 19, 183-194
    • (1994) Mol. Biol. Rep. , vol.19 , pp. 183-194
    • Pel, H.J.1    Grivell, L.A.2
  • 55
    • 4243555414 scopus 로고    scopus 로고
    • Plant ribosome recycling factor homologue is a chloroplastic protein and is bactericidal in Escherichia coli carrying temperature-sensitive ribosome recycling factor
    • Rolland, N., Janosi, L., Block, M. A., Shuda, M., Teyssier, E., Miège, C., Chéniclet, C., Carde, J. P., Kaji, A., and Joyard, J. (1999) Plant ribosome recycling factor homologue is a chloroplastic protein and is bactericidal in Escherichia coli carrying temperature-sensitive ribosome recycling factor. Proc. Natl. Acad. Sci. U.S.A. 96, 5464-5469
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 5464-5469
    • Rolland, N.1    Janosi, L.2    Block, M.A.3    Shuda, M.4    Teyssier, E.5    Miège, C.6    Chéniclet, C.7    Carde, J.P.8    Kaji, A.9    Joyard, J.10
  • 56
    • 0242286001 scopus 로고    scopus 로고
    • Temperature-sensitive mutation in yeast mitochondrial ribosome recycling factor (RRF)
    • Teyssier, E., Hirokawa, G., Tretiakova, A., Jameson, B., Kaji, A., and Kaji, H. (2003) Temperature-sensitive mutation in yeast mitochondrial ribosome recycling factor (RRF). Nucleic Acids Res. 31, 4218-4226
    • (2003) Nucleic Acids Res. , vol.31 , pp. 4218-4226
    • Teyssier, E.1    Hirokawa, G.2    Tretiakova, A.3    Jameson, B.4    Kaji, A.5    Kaji, H.6
  • 57
  • 59
    • 0028314657 scopus 로고
    • Ribosome recycling factor (ribosome releasing factor) is essential for bacterial growth
    • Janosi, L., Shimizu, I., and Kaji, A. (1994) Ribosome recycling factor (ribosome releasing factor) is essential for bacterial growth. Proc. Natl. Acad. Sci. U.S.A. 91, 4249-4253
    • (1994) Proc. Natl. Acad. Sci. U.S.A. , vol.91 , pp. 4249-4253
    • Janosi, L.1    Shimizu, I.2    Kaji, A.3
  • 60
    • 0037020031 scopus 로고    scopus 로고
    • Orientation of ribosome recycling factor in the ribosome from directed hydroxyl radical probing
    • Lancaster, L., Kiel, M. C., Kaji, A., and Noller, H. F. (2002) Orientation of ribosome recycling factor in the ribosome from directed hydroxyl radical probing. Cell 111, 129-140
    • (2002) Cell , vol.111 , pp. 129-140
    • Lancaster, L.1    Kiel, M.C.2    Kaji, A.3    Noller, H.F.4
  • 62
    • 33748582906 scopus 로고    scopus 로고
    • Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements
    • Korostelev, A., Trakhanov, S., Laurberg, M., and Noller, H. F. (2006) Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements. Cell 126, 1065-1077
    • (2006) Cell , vol.126 , pp. 1065-1077
    • Korostelev, A.1    Trakhanov, S.2    Laurberg, M.3    Noller, H.F.4
  • 63
    • 0025316896 scopus 로고
    • Symptomatic hypomagnesemia associated with gentamicin therapy
    • Kes, P., and Reiner, Z. (1990) Symptomatic hypomagnesemia associated with gentamicin therapy. Magnes. Trace Elem. 9, 54-60
    • (1990) Magnes. Trace Elem. , vol.9 , pp. 54-60
    • Kes, P.1    Reiner, Z.2
  • 65
    • 85080849643 scopus 로고    scopus 로고
    • Allergic contact dermatitis from gentamicin in eyedrops, with cross-reactivity to kanamycin but not neomycin
    • Sánchez-Pérez, J., López, M. P., De Vega Haro, J. M., and García-Díez, A. (2001) Allergic contact dermatitis from gentamicin in eyedrops, with cross-reactivity to kanamycin but not neomycin. Contact Dermatitis 44, 54, 10.1034/j.1398-9995.2003.23710-5.x
    • (2001) Contact Dermatitis , vol.44 , pp. 54
    • Sánchez-Pérez, J.1    López, M.P.2    De Vega Haro, J.M.3    García-Díez, A.4
  • 66
    • 0344839041 scopus 로고    scopus 로고
    • Gentamicin-induced anaphylaxis
    • Schulze, S., and Wollina, U. (2003) Gentamicin-induced anaphylaxis. Allergy 58, 88-89
    • (2003) Allergy , vol.58 , pp. 88-89
    • Schulze, S.1    Wollina, U.2
  • 67
    • 84866450279 scopus 로고    scopus 로고
    • Intraventricular antibiotics for bacterial meningitis in neonates
    • Shah, S., Ohlsson, A., and Shah, V. (2004) Intraventricular antibiotics for bacterial meningitis in neonates. Cochrane Database Syst. Rev. Cd004496, 10.1002/14651858.CD004496.pub2
    • (2004) Cochrane Database Syst. Rev.
    • Shah, S.1    Ohlsson, A.2    Shah, V.3
  • 68
    • 0016830653 scopus 로고
    • Acute toxic psychosis associated with gentamicin therapy
    • Kane, F. J., Jr., and Byrd, G. (1975) Acute toxic psychosis associated with gentamicin therapy. South. Med. J. 68, 1283-1285
    • (1975) South. Med. J. , vol.68 , pp. 1283-1285
    • Kane, F.J.1    Byrd, G.2
  • 69
    • 0034704217 scopus 로고    scopus 로고
    • The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit
    • Brodersen, D. E., Clemons, W. M., Jr., Carter, A. P., Morgan-Warren, R. J., Wimberly, B. T., and Ramakrishnan, V. (2000) The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit. Cell 103, 1143-1154
    • (2000) Cell , vol.103 , pp. 1143-1154
    • Brodersen, D.E.1    Clemons, W.M.2    Carter, A.P.3    Morgan-Warren, R.J.4    Wimberly, B.T.5    Ramakrishnan, V.6
  • 71
    • 28844501658 scopus 로고    scopus 로고
    • Analysis of the contribution of individual substituents in 4,6-aminoglycoside-ribosome interaction
    • Hobbie, S. N., Pfister, P., Brüll, C., Westhof, E., and Böttger, E. C. (2005) Analysis of the contribution of individual substituents in 4,6-aminoglycoside-ribosome interaction. Antimicrob. Agents Chemother. 49, 5112-5118
    • (2005) Antimicrob. Agents Chemother. , vol.49 , pp. 5112-5118
    • Hobbie, S.N.1    Pfister, P.2    Brüll, C.3    Westhof, E.4    Böttger, E.C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.