메뉴 건너뛰기




Volumn 282, Issue 17, 2015, Pages 3395-3411

Uncovering major genomic features of essential genes in Bacteria and a methanogenic Archaea

Author keywords

essential genes; genome evolution; genome organization; operons; prokaryotes; transposon mutagenesis

Indexed keywords

ARCHAEAL GENE; ARCHAEAL GENOME; ARTICLE; BACILLUS SUBTILIS; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL GROWTH; BURKHOLDERIA PSEUDOMALLEI; CELL PROLIFERATION; ESCHERICHIA COLI; ESSENTIAL GENE; FTSZ GENE; GENE FUNCTION; GENE IDENTIFICATION; GENE NUMBER; GENE ORDER; GENE SEQUENCE; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC COMPLEMENTATION; GENETIC CONSERVATION; GENOME ANALYSIS; GENOME SIZE; HORIZONTAL GENE TRANSFER; METHANOCOCCUS MARIPALUDIS; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; OPERON; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; STREPTOCOCCUS SANGUINIS; ARCHAEON; EVOLUTION; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORK; GENETICS; MOLECULAR GENETICS; STREPTOCOCCUS;

EID: 84940676086     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/febs.13350     Document Type: Article
Times cited : (34)

References (94)
  • 1
    • 83855165692 scopus 로고    scopus 로고
    • Extreme genome reduction in symbiotic bacteria
    • McCutcheon JP, &, Moran NA, (2012) Extreme genome reduction in symbiotic bacteria. Nat Rev Microbiol 10, 13-26.
    • (2012) Nat Rev Microbiol , vol.10 , pp. 13-26
    • McCutcheon, J.P.1    Moran, N.A.2
  • 3
    • 10644230266 scopus 로고    scopus 로고
    • A genomic timescale of prokaryote evolution: Insights into the origin of methanogenesis, phototrophy, and the colonization of land
    • Battistuzzi FU, Feijao A, &, Hedges SB, (2004) A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land. BMC Evol Biol 4, 44.
    • (2004) BMC Evol Biol , vol.4 , pp. 44
    • Battistuzzi, F.U.1    Feijao, A.2    Hedges, S.B.3
  • 4
    • 56949097722 scopus 로고    scopus 로고
    • Evolution of genome architecture
    • Koonin EV, (2009) Evolution of genome architecture. Int J Biochem Cell Biol 41, 298-306.
    • (2009) Int J Biochem Cell Biol , vol.41 , pp. 298-306
    • Koonin, E.V.1
  • 5
  • 6
    • 0010414313 scopus 로고    scopus 로고
    • Evolution of gene order conservation in prokaryotes
    • Tamames J, (2001) Evolution of gene order conservation in prokaryotes. Genome Biol 2, RESEARCH0020.
    • (2001) Genome Biol , vol.2
    • Tamames, J.1
  • 7
    • 0034571148 scopus 로고    scopus 로고
    • How many genes can make a cell: The minimal-gene-set concept
    • Koonin EV, (2000) How many genes can make a cell: the minimal-gene-set concept. Annu Rev Genomics Hum Genet 1, 99-116.
    • (2000) Annu Rev Genomics Hum Genet , vol.1 , pp. 99-116
    • Koonin, E.V.1
  • 8
    • 0029789824 scopus 로고    scopus 로고
    • A minimal gene set for cellular life derived by comparison of complete bacterial genomes
    • Mushegian AR, &, Koonin EV, (1996) A minimal gene set for cellular life derived by comparison of complete bacterial genomes. Proc Natl Acad Sci USA 93, 10268-10273.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 10268-10273
    • Mushegian, A.R.1    Koonin, E.V.2
  • 12
    • 84870479250 scopus 로고    scopus 로고
    • A fine scale phenotype-genotype virulence map of a bacterial pathogen
    • van Opijnen T, &, Camilli A, (2012) A fine scale phenotype-genotype virulence map of a bacterial pathogen. Genome Res 22, 2541-2551.
    • (2012) Genome Res , vol.22 , pp. 2541-2551
    • Van Opijnen, T.1    Camilli, A.2
  • 13
    • 80053098802 scopus 로고    scopus 로고
    • Essence of life: Essential genes of minimal genomes
    • Juhas M, Eberl L, &, Glass JI, (2011) Essence of life: essential genes of minimal genomes. Trends Cell Biol 21, 562-568.
    • (2011) Trends Cell Biol , vol.21 , pp. 562-568
    • Juhas, M.1    Eberl, L.2    Glass, J.I.3
  • 15
    • 0242268400 scopus 로고    scopus 로고
    • Genetic requirements for mycobacterial survival during infection
    • Sassetti CM, &, Rubin EJ, (2003) Genetic requirements for mycobacterial survival during infection. Proc Natl Acad Sci USA 100, 12989-12994.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 12989-12994
    • Sassetti, C.M.1    Rubin, E.J.2
  • 18
    • 84912094821 scopus 로고    scopus 로고
    • Refactoring and optimization of light-switchable Escherichia coli two-component systems
    • Schmidl SR, Sheth RU, Wu A, &, Tabor JJ, (2014) Refactoring and optimization of light-switchable Escherichia coli two-component systems. ACS Synth Biol 3, 820-831.
    • (2014) ACS Synth Biol , vol.3 , pp. 820-831
    • Schmidl, S.R.1    Sheth, R.U.2    Wu, A.3    Tabor, J.J.4
  • 19
    • 0036078078 scopus 로고    scopus 로고
    • Essential genes are more evolutionarily conserved than are nonessential genes in bacteria
    • Jordan IK, Rogozin IB, Wolf YI, &, Koonin EV, (2002) Essential genes are more evolutionarily conserved than are nonessential genes in bacteria. Genome Res 12, 962-968.
    • (2002) Genome Res , vol.12 , pp. 962-968
    • Jordan, I.K.1    Rogozin, I.B.2    Wolf, Y.I.3    Koonin, E.V.4
  • 20
    • 1242284655 scopus 로고    scopus 로고
    • An analysis of determinants of amino acids substitution rates in bacterial proteins
    • Rocha EP, &, Danchin A, (2004) An analysis of determinants of amino acids substitution rates in bacterial proteins. Mol Biol Evol 21, 108-116.
    • (2004) Mol Biol Evol , vol.21 , pp. 108-116
    • Rocha, E.P.1    Danchin, A.2
  • 21
    • 26444558214 scopus 로고    scopus 로고
    • How essential are nonessential genes?
    • Fang G, Rocha E, &, Danchin A, (2005) How essential are nonessential genes? Mol Biol Evol 22, 2147-2156.
    • (2005) Mol Biol Evol , vol.22 , pp. 2147-2156
    • Fang, G.1    Rocha, E.2    Danchin, A.3
  • 22
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov RL, Koonin EV, &, Lipman DJ, (1997) A genomic perspective on protein families. Science 278, 631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 23
    • 40549083303 scopus 로고    scopus 로고
    • Gene essentiality analysis based on DEG, a database of essential genes
    • Zhang CT, &, Zhang R, (2008) Gene essentiality analysis based on DEG, a database of essential genes. Methods Mol Biol 416, 391-400.
    • (2008) Methods Mol Biol , vol.416 , pp. 391-400
    • Zhang, C.T.1    Zhang, R.2
  • 24
    • 84876808409 scopus 로고    scopus 로고
    • From essential to persistent genes: A functional approach to constructing synthetic life
    • Acevedo-Rocha CG, Fang G, Schmidt M, Ussery DW, &, Danchin A, (2013) From essential to persistent genes: a functional approach to constructing synthetic life. Trends Genet 29, 273-279.
    • (2013) Trends Genet , vol.29 , pp. 273-279
    • Acevedo-Rocha, C.G.1    Fang, G.2    Schmidt, M.3    Ussery, D.W.4    Danchin, A.5
  • 26
    • 17144459133 scopus 로고    scopus 로고
    • Evidence against the selfish operon theory
    • Pal C, &, Hurst LD, (2004) Evidence against the selfish operon theory. Trends Genet 20, 232-234.
    • (2004) Trends Genet , vol.20 , pp. 232-234
    • Pal, C.1    Hurst, L.D.2
  • 27
    • 22444441190 scopus 로고    scopus 로고
    • Operon formation is driven by co-regulation and not by horizontal gene transfer
    • Price MN, Huang KH, Arkin AP, &, Alm EJ, (2005) Operon formation is driven by co-regulation and not by horizontal gene transfer. Genome Res 15, 809-819.
    • (2005) Genome Res , vol.15 , pp. 809-819
    • Price, M.N.1    Huang, K.H.2    Arkin, A.P.3    Alm, E.J.4
  • 28
    • 84875251958 scopus 로고    scopus 로고
    • Genome-scale analysis of gene function in the hydrogenotrophic methanogenic archaeon Methanococcus maripaludis
    • Sarmiento F, Mrazek J, &, Whitman WB, (2013) Genome-scale analysis of gene function in the hydrogenotrophic methanogenic archaeon Methanococcus maripaludis. Proc Natl Acad Sci USA 110, 4726-4731.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 4726-4731
    • Sarmiento, F.1    Mrazek, J.2    Whitman, W.B.3
  • 31
    • 78651286166 scopus 로고    scopus 로고
    • The Mouse Genome Database (MGD): Premier model organism resource for mammalian genomics and genetics
    • Mouse Genome Database G.
    • Blake JA, Bult CJ, Kadin JA, Richardson JE, &, Eppig JT, & Mouse Genome Database G (2011) The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics. Nucleic Acids Res 39, D842-D848.
    • (2011) Nucleic Acids Res , vol.39 , pp. D842-D848
    • Blake, J.A.1    Bult, C.J.2    Kadin, J.A.3    Richardson, J.E.4    Eppig, J.T.5
  • 32
  • 33
    • 1942532925 scopus 로고    scopus 로고
    • Origins and evolution of isoprenoid lipid biosynthesis in archaea
    • Boucher Y, Kamekura M, &, Doolittle WF, (2004) Origins and evolution of isoprenoid lipid biosynthesis in archaea. Mol Microbiol 52, 515-527.
    • (2004) Mol Microbiol , vol.52 , pp. 515-527
    • Boucher, Y.1    Kamekura, M.2    Doolittle, W.F.3
  • 34
    • 0031792855 scopus 로고    scopus 로고
    • Did archaeal and bacterial cells arise independently from noncellular Precursors? A hypothesis stating that the advent of membrane phospholipid with enantiomeric glycerophosphate backbones caused the separation of the two lines of descent
    • Koga Y, Kyuragi T, Nishihara M, &, Sone N, (1998) Did archaeal and bacterial cells arise independently from noncellular Precursors? A hypothesis stating that the advent of membrane phospholipid with enantiomeric glycerophosphate backbones caused the separation of the two lines of descent. J Mol Evol 47, 631.
    • (1998) J Mol Evol , vol.47 , pp. 631
    • Koga, Y.1    Kyuragi, T.2    Nishihara, M.3    Sone, N.4
  • 35
    • 84898058598 scopus 로고    scopus 로고
    • Phylogenomic reconstruction of archaeal fatty acid metabolism
    • Dibrova DV, Galperin MY, &, Mulkidjanian AY, (2014) Phylogenomic reconstruction of archaeal fatty acid metabolism. Environ Microbiol 16, 907-918.
    • (2014) Environ Microbiol , vol.16 , pp. 907-918
    • Dibrova, D.V.1    Galperin, M.Y.2    Mulkidjanian, A.Y.3
  • 36
    • 84876910795 scopus 로고    scopus 로고
    • Metabolic plasticity for isoprenoid biosynthesis in bacteria
    • Perez-Gil J, &, Rodriguez-Concepcion M, (2013) Metabolic plasticity for isoprenoid biosynthesis in bacteria. Biochem J 452, 19-25.
    • (2013) Biochem J , vol.452 , pp. 19-25
    • Perez-Gil, J.1    Rodriguez-Concepcion, M.2
  • 38
    • 57149086650 scopus 로고    scopus 로고
    • PSICIC: Noise and asymmetry in bacterial division revealed by computational image analysis at sub-pixel resolution
    • Guberman JM, Fay A, Dworkin J, Wingreen NS, &, Gitai Z, (2008) PSICIC: noise and asymmetry in bacterial division revealed by computational image analysis at sub-pixel resolution. PLoS Comput Biol 4, e1000233.
    • (2008) PLoS Comput Biol , vol.4 , pp. e1000233
    • Guberman, J.M.1    Fay, A.2    Dworkin, J.3    Wingreen, N.S.4    Gitai, Z.5
  • 40
    • 1642462396 scopus 로고    scopus 로고
    • Molecular evolution of FtsZ protein sequences encoded within the genomes of archaea, bacteria, and eukaryota
    • Vaughan S, Wickstead B, Gull K, &, Addinall SG, (2004) Molecular evolution of FtsZ protein sequences encoded within the genomes of archaea, bacteria, and eukaryota. J Mol Evol 58, 19-29.
    • (2004) J Mol Evol , vol.58 , pp. 19-29
    • Vaughan, S.1    Wickstead, B.2    Gull, K.3    Addinall, S.G.4
  • 41
    • 77957130448 scopus 로고    scopus 로고
    • Evolution of diverse cell division and vesicle formation systems in Archaea
    • Makarova KS, Yutin N, Bell SD, &, Koonin EV, (2010) Evolution of diverse cell division and vesicle formation systems in Archaea. Nat Rev Microbiol 8, 731-741.
    • (2010) Nat Rev Microbiol , vol.8 , pp. 731-741
    • Makarova, K.S.1    Yutin, N.2    Bell, S.D.3    Koonin, E.V.4
  • 42
    • 7644219685 scopus 로고    scopus 로고
    • Bacterial cell division and the septal ring
    • Weiss DS, (2004) Bacterial cell division and the septal ring. Mol Microbiol 54, 588-597.
    • (2004) Mol Microbiol , vol.54 , pp. 588-597
    • Weiss, D.S.1
  • 44
    • 39549098697 scopus 로고    scopus 로고
    • Persistence drives gene clustering in bacterial genomes
    • Fang G, Rocha EP, &, Danchin A, (2008) Persistence drives gene clustering in bacterial genomes. BMC Genom 9, 4.
    • (2008) BMC Genom , vol.9 , pp. 4
    • Fang, G.1    Rocha, E.P.2    Danchin, A.3
  • 46
    • 46749110034 scopus 로고    scopus 로고
    • FactoMineR: An R package for multivariate analysis
    • Le S, Josse J, &, Husson F, (2008) FactoMineR: an R package for multivariate analysis. J Stat Softw 25, 1-18.
    • (2008) J Stat Softw , vol.25 , pp. 1-18
    • Le, S.1    Josse, J.2    Husson, F.3
  • 47
    • 20444419421 scopus 로고    scopus 로고
    • Genome-wide requirements for Mycobacterium tuberculosis adaptation and survival in macrophages
    • Rengarajan J, Bloom BR, &, Rubin EJ, (2005) Genome-wide requirements for Mycobacterium tuberculosis adaptation and survival in macrophages. Proc Natl Acad Sci USA 102, 8327-8332.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 8327-8332
    • Rengarajan, J.1    Bloom, B.R.2    Rubin, E.J.3
  • 51
    • 58949097886 scopus 로고    scopus 로고
    • Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins
    • Maddocks SE, &, Oyston PC, (2008) Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins. Microbiology 154, 3609-3623.
    • (2008) Microbiology , vol.154 , pp. 3609-3623
    • Maddocks, S.E.1    Oyston, P.C.2
  • 52
    • 12344260650 scopus 로고    scopus 로고
    • Antibiotic susceptibility of 65 isolates of Burkholderia pseudomallei and Burkholderia mallei to 35 antimicrobial agents
    • Thibault FM, Hernandez E, Vidal DR, Girardet M, &, Cavallo JD, (2004) Antibiotic susceptibility of 65 isolates of Burkholderia pseudomallei and Burkholderia mallei to 35 antimicrobial agents. J Antimicrob Chemother 54, 1134-1138.
    • (2004) J Antimicrob Chemother , vol.54 , pp. 1134-1138
    • Thibault, F.M.1    Hernandez, E.2    Vidal, D.R.3    Girardet, M.4    Cavallo, J.D.5
  • 54
    • 0030613533 scopus 로고    scopus 로고
    • The active species of 'CO2' utilized by formylmethanofuran dehydrogenase from methanogenic Archaea
    • Vorholt JA, &, Thauer RK, (1997) The active species of 'CO2' utilized by formylmethanofuran dehydrogenase from methanogenic Archaea. Eur J Biochem 248, 919-924.
    • (1997) Eur J Biochem , vol.248 , pp. 919-924
    • Vorholt, J.A.1    Thauer, R.K.2
  • 55
    • 0027339844 scopus 로고
    • Purification and properties of N5-methyltetrahydromethanopterin: Coenzyme M methyltransferase from Methanobacterium thermoautotrophicum
    • Gartner P, Ecker A, Fischer R, Linder D, Fuchs G, &, Thauer RK, (1993) Purification and properties of N5-methyltetrahydromethanopterin: coenzyme M methyltransferase from Methanobacterium thermoautotrophicum. Eur J Biochem 213, 537-545.
    • (1993) Eur J Biochem , vol.213 , pp. 537-545
    • Gartner, P.1    Ecker, A.2    Fischer, R.3    Linder, D.4    Fuchs, G.5    Thauer, R.K.6
  • 56
    • 27744495351 scopus 로고    scopus 로고
    • On the mechanism of methyl-coenzyme M reductase
    • Ermler U, (2005) On the mechanism of methyl-coenzyme M reductase. Dalton Trans 21, 3451-3458.
    • (2005) Dalton Trans , vol.21 , pp. 3451-3458
    • Ermler, U.1
  • 57
    • 0037115872 scopus 로고    scopus 로고
    • Comparative analysis of ribosomal proteins in complete genomes: An example of reductive evolution at the domain scale
    • Lecompte O, Ripp R, Thierry JC, Moras D, &, Poch O, (2002) Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. Nucleic Acids Res 30, 5382-5390.
    • (2002) Nucleic Acids Res , vol.30 , pp. 5382-5390
    • Lecompte, O.1    Ripp, R.2    Thierry, J.C.3    Moras, D.4    Poch, O.5
  • 58
    • 0033199713 scopus 로고    scopus 로고
    • Did DNA replication evolve twice independently?
    • Leipe DD, Aravind L, &, Koonin EV, (1999) Did DNA replication evolve twice independently? Nucleic Acids Res 27, 3389-3401.
    • (1999) Nucleic Acids Res , vol.27 , pp. 3389-3401
    • Leipe, D.D.1    Aravind, L.2    Koonin, E.V.3
  • 59
    • 84910137102 scopus 로고    scopus 로고
    • Evolutionary analysis of multidrug resistance genes in fungi - Impact of gene duplication and family conservation
    • Gossani C, Bellieny-Rabelo D, &, Venancio TM, (2014) Evolutionary analysis of multidrug resistance genes in fungi-impact of gene duplication and family conservation. FEBS J 281, 4967-4977.
    • (2014) FEBS J , vol.281 , pp. 4967-4977
    • Gossani, C.1    Bellieny-Rabelo, D.2    Venancio, T.M.3
  • 60
    • 0347033256 scopus 로고    scopus 로고
    • Role of duplicate genes in genetic robustness against null mutations
    • Gu Z, Steinmetz LM, Gu X, Scharfe C, Davis RW, &, Li WH, (2003) Role of duplicate genes in genetic robustness against null mutations. Nature 421, 63-66.
    • (2003) Nature , vol.421 , pp. 63-66
    • Gu, Z.1    Steinmetz, L.M.2    Gu, X.3    Scharfe, C.4    Davis, R.W.5    Li, W.H.6
  • 61
    • 79952474896 scopus 로고    scopus 로고
    • Loss of genetic redundancy in reductive genome evolution
    • Mendonca AG, Alves RJ, &, Pereira-Leal JB, (2011) Loss of genetic redundancy in reductive genome evolution. PLoS Comput Biol 7, e1001082.
    • (2011) PLoS Comput Biol , vol.7 , pp. e1001082
    • Mendonca, A.G.1    Alves, R.J.2    Pereira-Leal, J.B.3
  • 62
    • 1342271382 scopus 로고    scopus 로고
    • From gene trees to organismal phylogeny in prokaryotes: The case of the gamma-Proteobacteria
    • Lerat E, Daubin V, &, Moran NA, (2003) From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria. PLoS Biol 1, E19.
    • (2003) PLoS Biol , vol.1 , pp. E19
    • Lerat, E.1    Daubin, V.2    Moran, N.A.3
  • 63
    • 0035085816 scopus 로고    scopus 로고
    • Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context
    • Wolf YI, Rogozin IB, Kondrashov AS, &, Koonin EV, (2001) Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. Genome Res 11, 356-372.
    • (2001) Genome Res , vol.11 , pp. 356-372
    • Wolf, Y.I.1    Rogozin, I.B.2    Kondrashov, A.S.3    Koonin, E.V.4
  • 64
    • 0032169271 scopus 로고    scopus 로고
    • Conservation of gene order: A fingerprint of proteins that physically interact
    • Dandekar T, Snel B, Huynen M, &, Bork P, (1998) Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem Sci 23, 324-328.
    • (1998) Trends Biochem Sci , vol.23 , pp. 324-328
    • Dandekar, T.1    Snel, B.2    Huynen, M.3    Bork, P.4
  • 65
    • 0034306448 scopus 로고    scopus 로고
    • Gene context conservation of a higher order than operons
    • Lathe WC 3rd, Snel B, &, Bork P, (2000) Gene context conservation of a higher order than operons. Trends Biochem Sci 25, 474-479.
    • (2000) Trends Biochem Sci , vol.25 , pp. 474-479
    • Lathe, W.C.1    Snel, B.2    Bork, P.3
  • 66
    • 11144283225 scopus 로고    scopus 로고
    • Organisation of the S10, spc and alpha ribosomal protein gene clusters in prokaryotic genomes
    • Coenye T, &, Vandamme P, (2005) Organisation of the S10, spc and alpha ribosomal protein gene clusters in prokaryotic genomes. FEMS Microbiol Lett 242, 117-126.
    • (2005) FEMS Microbiol Lett , vol.242 , pp. 117-126
    • Coenye, T.1    Vandamme, P.2
  • 69
    • 79953160460 scopus 로고    scopus 로고
    • The pseudogenes of Mycobacterium leprae reveal the functional relevance of gene order within operons
    • Muro EM, Mah N, Moreno-Hagelsieb G, &, Andrade-Navarro MA, (2011) The pseudogenes of Mycobacterium leprae reveal the functional relevance of gene order within operons. Nucleic Acids Res 39, 1732-1738.
    • (2011) Nucleic Acids Res , vol.39 , pp. 1732-1738
    • Muro, E.M.1    Mah, N.2    Moreno-Hagelsieb, G.3    Andrade-Navarro, M.A.4
  • 71
    • 77957726465 scopus 로고    scopus 로고
    • Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology
    • Ning K, Ng HK, Srihari S, Leong HW, &, Nesvizhskii AI, (2010) Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology. BMC Bioinformatics 11, 505.
    • (2010) BMC Bioinformatics , vol.11 , pp. 505
    • Ning, K.1    Ng, H.K.2    Srihari, S.3    Leong, H.W.4    Nesvizhskii, A.I.5
  • 73
    • 79960614137 scopus 로고    scopus 로고
    • Fundamental relationship between operon organization and gene expression
    • Lim HN, Lee Y, &, Hussein R, (2011) Fundamental relationship between operon organization and gene expression. Proc Natl Acad Sci USA 108, 10626-10631.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 10626-10631
    • Lim, H.N.1    Lee, Y.2    Hussein, R.3
  • 75
    • 77950678110 scopus 로고    scopus 로고
    • Evolutionary conservation of essential and highly expressed genes in Pseudomonas aeruginosa
    • Dotsch A, Klawonn F, Jarek M, Scharfe M, Blocker H, &, Haussler S, (2010) Evolutionary conservation of essential and highly expressed genes in Pseudomonas aeruginosa. BMC Genom 11, 234.
    • (2010) BMC Genom , vol.11 , pp. 234
    • Dotsch, A.1    Klawonn, F.2    Jarek, M.3    Scharfe, M.4    Blocker, H.5    Haussler, S.6
  • 79
    • 84891765377 scopus 로고    scopus 로고
    • DOOR 2.0: Presenting operons and their functions through dynamic and integrated views
    • Mao X, Ma Q, Zhou C, Chen X, Zhang H, Yang J, Mao F, Lai W, &, Xu Y, (2014) DOOR 2.0: presenting operons and their functions through dynamic and integrated views. Nucleic Acids Res 42, D654-D659.
    • (2014) Nucleic Acids Res , vol.42 , pp. D654-D659
    • Mao, X.1    Ma, Q.2    Zhou, C.3    Chen, X.4    Zhang, H.5    Yang, J.6    Mao, F.7    Lai, W.8    Xu, Y.9
  • 82
    • 54949102400 scopus 로고    scopus 로고
    • A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
    • Podell S, Gaasterland T, &, Allen EE, (2008) A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm. BMC Bioinformatics 9, 419.
    • (2008) BMC Bioinformatics , vol.9 , pp. 419
    • Podell, S.1    Gaasterland, T.2    Allen, E.E.3
  • 83
    • 77952988108 scopus 로고    scopus 로고
    • A new generation of homology search tools based on probabilistic inference
    • Eddy SR, (2009) A new generation of homology search tools based on probabilistic inference. Genome Inform 23, 205-211.
    • (2009) Genome Inform , vol.23 , pp. 205-211
    • Eddy, S.R.1
  • 85
    • 80053459692 scopus 로고    scopus 로고
    • High-resolution phenotypic profiling defines genes essential for mycobacterial growth and cholesterol catabolism
    • Griffin JE, Gawronski JD, Dejesus MA, Ioerger TR, Akerley BJ, &, Sassetti CM, (2011) High-resolution phenotypic profiling defines genes essential for mycobacterial growth and cholesterol catabolism. PLoS Pathog 7, e1002251.
    • (2011) PLoS Pathog , vol.7 , pp. e1002251
    • Griffin, J.E.1    Gawronski, J.D.2    Dejesus, M.A.3    Ioerger, T.R.4    Akerley, B.J.5    Sassetti, C.M.6
  • 86
    • 84904721645 scopus 로고    scopus 로고
    • Identification of genes required for the survival of B. Fragilis using massive parallel sequencing of a saturated transposon mutant library
    • Veeranagouda Y, Husain F, Tenorio EL, &, Wexler HM, (2014) Identification of genes required for the survival of B. fragilis using massive parallel sequencing of a saturated transposon mutant library. BMC Genom 15, 429.
    • (2014) BMC Genom , vol.15 , pp. 429
    • Veeranagouda, Y.1    Husain, F.2    Tenorio, E.L.3    Wexler, H.M.4
  • 87
  • 91
    • 40549102134 scopus 로고    scopus 로고
    • The applications of systematic in-frame, single-gene knockout mutant collection of Escherichia coli K-12
    • Baba T, Huan HC, Datsenko K, Wanner BL, &, Mori H, (2008) The applications of systematic in-frame, single-gene knockout mutant collection of Escherichia coli K-12. Methods Mol Biol 416, 183-194.
    • (2008) Methods Mol Biol , vol.416 , pp. 183-194
    • Baba, T.1    Huan, H.C.2    Datsenko, K.3    Wanner, B.L.4    Mori, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.