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Volumn 571, Issue 2, 2015, Pages 194-204

Integrated and comparative miRNA analysis of starvation-induced autophagy in mouse embryonic fibroblasts

Author keywords

Atg5; Autophagy; Microarray; miRNA; mTOR; Starvation

Indexed keywords

HYDROXYMETHYLGLUTARYL COENZYME A REDUCTASE KINASE; LIVER KINASE B1; MAMMALIAN TARGET OF RAPAMYCIN; MICRORNA; PHOSPHATIDYLINOSITOL 3 KINASE; PHOSPHOTRANSFERASE; UNCLASSIFIED DRUG;

EID: 84940591305     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2015.06.040     Document Type: Article
Times cited : (7)

References (58)
  • 1
    • 77954237882 scopus 로고    scopus 로고
    • Network organization of the human autophagy system
    • Behrends C., Sowa M.E., Gygi S.P., Harper J.W. Network organization of the human autophagy system. Nature 2010, 466:68-76.
    • (2010) Nature , vol.466 , pp. 68-76
    • Behrends, C.1    Sowa, M.E.2    Gygi, S.P.3    Harper, J.W.4
  • 3
    • 84862750365 scopus 로고    scopus 로고
    • MiR-375 inhibits autophagy and reduces viability of hepatocellular carcinoma cells under hypoxic conditions
    • e8
    • Chang Y., Yan W., He X., Zhang L., Li C., Huang H., Nace G., Geller D.A., Lin J., Tsung A. miR-375 inhibits autophagy and reduces viability of hepatocellular carcinoma cells under hypoxic conditions. Gastroenterology 2012, 143(1):177-187. e8.
    • (2012) Gastroenterology , vol.143 , Issue.1 , pp. 177-187
    • Chang, Y.1    Yan, W.2    He, X.3    Zhang, L.4    Li, C.5    Huang, H.6    Nace, G.7    Geller, D.A.8    Lin, J.9    Tsung, A.10
  • 4
    • 33846283385 scopus 로고    scopus 로고
    • The evolution of gene regulation by transcription factors and microRNAs
    • Chen K., Rajewsky N. The evolution of gene regulation by transcription factors and microRNAs. Nat. Rev. Genet. 2007, 8:93-103.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 93-103
    • Chen, K.1    Rajewsky, N.2
  • 6
    • 84867631216 scopus 로고    scopus 로고
    • Use of inducible Atg5 deletion and expression cell lines in study of the pro-survival function of autophagy under starvation
    • Chen B., Sun X., Zhang Y., Zhu X.-Q., Shen H.-M. Use of inducible Atg5 deletion and expression cell lines in study of the pro-survival function of autophagy under starvation. Biochem. Biophys. Res. Commun. 2012, 427:11-17.
    • (2012) Biochem. Biophys. Res. Commun. , vol.427 , pp. 11-17
    • Chen, B.1    Sun, X.2    Zhang, Y.3    Zhu, X.-Q.4    Shen, H.-M.5
  • 7
    • 84869155462 scopus 로고    scopus 로고
    • The miR-290-295 cluster suppresses autophagic cell death of melanoma cells
    • Chen Y., Liersch R., Detmar M. The miR-290-295 cluster suppresses autophagic cell death of melanoma cells. Sci. Rep. 2012, 2.
    • (2012) Sci. Rep. , vol.2
    • Chen, Y.1    Liersch, R.2    Detmar, M.3
  • 8
    • 84877628647 scopus 로고    scopus 로고
    • Autophagy in human health and disease
    • Choi A.M., Ryter S.W., Levine B. Autophagy in human health and disease. N. Engl. J. Med. 2013, 368:651-662.
    • (2013) N. Engl. J. Med. , vol.368 , pp. 651-662
    • Choi, A.M.1    Ryter, S.W.2    Levine, B.3
  • 9
    • 31444431754 scopus 로고    scopus 로고
    • Reliability and reproducibility issues in DNA microarray measurements
    • Draghici S., Khatri P., Eklund A.C., Szallasi Z. Reliability and reproducibility issues in DNA microarray measurements. Trends Genet. 2006, 22:101-109.
    • (2006) Trends Genet. , vol.22 , pp. 101-109
    • Draghici, S.1    Khatri, P.2    Eklund, A.C.3    Szallasi, Z.4
  • 10
    • 79959805164 scopus 로고    scopus 로고
    • MiRWalk-database: prediction of possible miRNA binding sites by "walking" the genes of three genomes
    • Dweep H., Sticht C., Pandey P., Gretz N. miRWalk-database: prediction of possible miRNA binding sites by "walking" the genes of three genomes. J. Biomed. Inform. 2011, 44:839-847.
    • (2011) J. Biomed. Inform. , vol.44 , pp. 839-847
    • Dweep, H.1    Sticht, C.2    Pandey, P.3    Gretz, N.4
  • 11
    • 79959805164 scopus 로고    scopus 로고
    • MiRWalk-database: prediction of possible miRNA binding sites by "walking" the genes of three genomes
    • Dweep H., Sticht C., Pandey P., Gretz N. miRWalk-database: prediction of possible miRNA binding sites by "walking" the genes of three genomes. J. Biomed. Inform. 2011, 44:839-847.
    • (2011) J. Biomed. Inform. , vol.44 , pp. 839-847
    • Dweep, H.1    Sticht, C.2    Pandey, P.3    Gretz, N.4
  • 12
    • 84865592978 scopus 로고    scopus 로고
    • Amino acids and mTORC1: from lysosomes to disease
    • Efeyan A., Zoncu R., Sabatini D.M. Amino acids and mTORC1: from lysosomes to disease. Trends Mol. Med. 2012, 18(9):524-533.
    • (2012) Trends Mol. Med. , vol.18 , Issue.9 , pp. 524-533
    • Efeyan, A.1    Zoncu, R.2    Sabatini, D.M.3
  • 13
    • 84868627011 scopus 로고    scopus 로고
    • MicroRNA regulation of autophagy
    • Frankel L.B., Lund A.H. MicroRNA regulation of autophagy. Carcinogenesis 2012, 33:2018-2025.
    • (2012) Carcinogenesis , vol.33 , pp. 2018-2025
    • Frankel, L.B.1    Lund, A.H.2
  • 16
    • 84891014899 scopus 로고    scopus 로고
    • The return of the nucleus: transcriptional and epigenetic control of autophagy
    • Füllgrabe J., Klionsky D.J., Joseph B. The return of the nucleus: transcriptional and epigenetic control of autophagy. Nat. Rev. Mol. Cell Biol. 2014, 15:65-74.
    • (2014) Nat. Rev. Mol. Cell Biol. , vol.15 , pp. 65-74
    • Füllgrabe, J.1    Klionsky, D.J.2    Joseph, B.3
  • 19
    • 84863344601 scopus 로고    scopus 로고
    • Phospho-δNp63α-dependent regulation of autophagic signaling through transcription and micro-RNA modulation
    • Huang Y., Guerrero-Preston R., Ratovitski E.A. Phospho-δNp63α-dependent regulation of autophagic signaling through transcription and micro-RNA modulation. Cell Cycle 2012, 11:1247-1259.
    • (2012) Cell Cycle , vol.11 , pp. 1247-1259
    • Huang, Y.1    Guerrero-Preston, R.2    Ratovitski, E.A.3
  • 20
    • 79955692998 scopus 로고    scopus 로고
    • Systems biology of the autophagy-lysosomal pathway
    • Jegga A.G., Schneider L., Ouyang X., Zhang J. Systems biology of the autophagy-lysosomal pathway. Autophagy 2011, 7:477-489.
    • (2011) Autophagy , vol.7 , pp. 477-489
    • Jegga, A.G.1    Schneider, L.2    Ouyang, X.3    Zhang, J.4
  • 22
    • 84924367293 scopus 로고    scopus 로고
    • LC3- and p62-based biochemical methods for the analysis of autophagy progression in mammalian cells
    • Jiang P., Mizushima N. LC3- and p62-based biochemical methods for the analysis of autophagy progression in mammalian cells. Methods 2015, 75:13-18.
    • (2015) Methods , vol.75 , pp. 13-18
    • Jiang, P.1    Mizushima, N.2
  • 23
    • 65949090057 scopus 로고    scopus 로고
    • RAG GTPases in nutrient-mediated TOR signaling pathway
    • Kim E., Guan K.-L. RAG GTPases in nutrient-mediated TOR signaling pathway. Cell Cycle 2009, 8:1014-1018.
    • (2009) Cell Cycle , vol.8 , pp. 1014-1018
    • Kim, E.1    Guan, K.-L.2
  • 24
    • 79551598347 scopus 로고    scopus 로고
    • AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1
    • Kim J., Kundu M., Viollet B., Guan K.-L. AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1. Nat. Cell Biol. 2011, 13:132-141.
    • (2011) Nat. Cell Biol. , vol.13 , pp. 132-141
    • Kim, J.1    Kundu, M.2    Viollet, B.3    Guan, K.-L.4
  • 25
    • 84872586081 scopus 로고    scopus 로고
    • Differential regulation of distinct Vps34 complexes by AMPK in nutrient stress and autophagy
    • Kim J., Kim Y.C., Fang C., Russell R.C., Kim J.H., Fan W., Liu R., Zhong Q., Guan K.-L. Differential regulation of distinct Vps34 complexes by AMPK in nutrient stress and autophagy. Cell 2013, 152:290-303.
    • (2013) Cell , vol.152 , pp. 290-303
    • Kim, J.1    Kim, Y.C.2    Fang, C.3    Russell, R.C.4    Kim, J.H.5    Fan, W.6    Liu, R.7    Zhong, Q.8    Guan, K.-L.9
  • 26
    • 0034537290 scopus 로고    scopus 로고
    • Autophagy as a regulated pathway of cellular degradation
    • Klionsky D.J., Emr S.D. Autophagy as a regulated pathway of cellular degradation. Science 2000, 290:1717-1721.
    • (2000) Science , vol.290 , pp. 1717-1721
    • Klionsky, D.J.1    Emr, S.D.2
  • 27
    • 85046981182 scopus 로고    scopus 로고
    • MiR-376b controls starvation and mTOR inhibition-related autophagy by targeting ATG4C and BECN1
    • Korkmaz G., Le Sage C., Tekirdag K.A., Agami R., Gozuacik D. miR-376b controls starvation and mTOR inhibition-related autophagy by targeting ATG4C and BECN1. Autophagy 2012, 8:165-176.
    • (2012) Autophagy , vol.8 , pp. 165-176
    • Korkmaz, G.1    Le Sage, C.2    Tekirdag, K.A.3    Agami, R.4    Gozuacik, D.5
  • 29
    • 78651293534 scopus 로고    scopus 로고
    • MiRBase: integrating microRNA annotation and deep-sequencing data
    • Kozomara A., Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 2011, 39:D152-D157.
    • (2011) Nucleic Acids Res. , vol.39 , pp. D152-D157
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 33
    • 84890786701 scopus 로고    scopus 로고
    • MIR106B and MIR93 prevent removal of bacteria from epithelial cells by disrupting ATG16L1-mediated autophagy
    • Lu C., Chen J., Xu H.G., Zhou X., He Q., Li Y.L., Jiang G., Shan Y., Xue B., Zhao R.X. MIR106B and MIR93 prevent removal of bacteria from epithelial cells by disrupting ATG16L1-mediated autophagy. Gastroenterology 2014, 146:188-199.
    • (2014) Gastroenterology , vol.146 , pp. 188-199
    • Lu, C.1    Chen, J.2    Xu, H.G.3    Zhou, X.4    He, Q.5    Li, Y.L.6    Jiang, G.7    Shan, Y.8    Xue, B.9    Zhao, R.X.10
  • 34
    • 36249025723 scopus 로고    scopus 로고
    • Autophagy: process and function
    • Mizushima N. Autophagy: process and function. Genes Dev. 2007, 21:2861-2873.
    • (2007) Genes Dev. , vol.21 , pp. 2861-2873
    • Mizushima, N.1
  • 35
    • 39849109338 scopus 로고    scopus 로고
    • Autophagy fights disease through cellular self-digestion
    • Mizushima N., Levine B., Cuervo A.M., Klionsky D.J. Autophagy fights disease through cellular self-digestion. Nature 2008, 451:1069-1075.
    • (2008) Nature , vol.451 , pp. 1069-1075
    • Mizushima, N.1    Levine, B.2    Cuervo, A.M.3    Klionsky, D.J.4
  • 36
    • 75749122303 scopus 로고    scopus 로고
    • Methods in mammalian autophagy research
    • Mizushima N., Yoshimori T., Levine B. Methods in mammalian autophagy research. Cell 2010, 140:313-326.
    • (2010) Cell , vol.140 , pp. 313-326
    • Mizushima, N.1    Yoshimori, T.2    Levine, B.3
  • 38
    • 70449711243 scopus 로고    scopus 로고
    • Computation for ChIP-seq and RNA-seq studies
    • Pepke S., Wold B., Mortazavi A. Computation for ChIP-seq and RNA-seq studies. Nat. Methods 2009, 6:S22-S32.
    • (2009) Nat. Methods , vol.6 , pp. S22-S32
    • Pepke, S.1    Wold, B.2    Mortazavi, A.3
  • 39
    • 77951768486 scopus 로고    scopus 로고
    • Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids
    • Sancak Y., Bar-Peled L., Zoncu R., Markhard A.L., Nada S., Sabatini D.M. Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids. Cell 2010, 141:290-303.
    • (2010) Cell , vol.141 , pp. 290-303
    • Sancak, Y.1    Bar-Peled, L.2    Zoncu, R.3    Markhard, A.L.4    Nada, S.5    Sabatini, D.M.6
  • 40
    • 84891748139 scopus 로고    scopus 로고
    • A current perspective of autophagosome biogenesis
    • Shibutani S.T., Yoshimori T. A current perspective of autophagosome biogenesis. Cell Res. 2014, 24:58-68.
    • (2014) Cell Res. , vol.24 , pp. 58-68
    • Shibutani, S.T.1    Yoshimori, T.2
  • 41
    • 8344242220 scopus 로고    scopus 로고
    • Autophagy in health and disease: a double-edged sword
    • Shintani T., Klionsky D.J. Autophagy in health and disease: a double-edged sword. Science 2004, 306:990-995.
    • (2004) Science , vol.306 , pp. 990-995
    • Shintani, T.1    Klionsky, D.J.2
  • 42
    • 79952146521 scopus 로고    scopus 로고
    • NAViGaTing the micronome-using multiple microRNA prediction databases to identify signalling pathway-associated microRNAs
    • Shirdel E.A., Xie W., Mak T.W., Jurisica I. NAViGaTing the micronome-using multiple microRNA prediction databases to identify signalling pathway-associated microRNAs. PLoS One 2011, 6:e17429.
    • (2011) PLoS One , vol.6 , pp. e17429
    • Shirdel, E.A.1    Xie, W.2    Mak, T.W.3    Jurisica, I.4
  • 44
    • 84877344944 scopus 로고    scopus 로고
    • MIR181A regulates starvation- and rapamycin-induced autophagy through targeting of ATG5
    • Tekirdag K.A., Korkmaz G., Ozturk D.G., Agami R., Gozuacik D. MIR181A regulates starvation- and rapamycin-induced autophagy through targeting of ATG5. Autophagy 2013, 9:107-118.
    • (2013) Autophagy , vol.9 , pp. 107-118
    • Tekirdag, K.A.1    Korkmaz, G.2    Ozturk, D.G.3    Agami, R.4    Gozuacik, D.5
  • 48
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • Wang Z., Gerstein M., Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 2009, 10:57-63.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 49
    • 84865326329 scopus 로고    scopus 로고
    • MiR-20a and miR-106b negatively regulate autophagy induced by leucine deprivation via suppression of ULK1 expression in C2C12 myoblasts
    • Wu H., Wang F., Hu S., Yin C., Li X., Zhao S., Wang J., Yan X. MiR-20a and miR-106b negatively regulate autophagy induced by leucine deprivation via suppression of ULK1 expression in C2C12 myoblasts. Cell. Signal. 2012, 24(11):2179-2186.
    • (2012) Cell. Signal. , vol.24 , Issue.11 , pp. 2179-2186
    • Wu, H.1    Wang, F.2    Hu, S.3    Yin, C.4    Li, X.5    Zhao, S.6    Wang, J.7    Yan, X.8
  • 50
    • 34848886914 scopus 로고    scopus 로고
    • Autophagosome formation: core machinery and adaptations
    • Xie Z., Klionsky D.J. Autophagosome formation: core machinery and adaptations. Nat. Cell Biol. 2007, 9:1102-1109.
    • (2007) Nat. Cell Biol. , vol.9 , pp. 1102-1109
    • Xie, Z.1    Klionsky, D.J.2
  • 51
    • 84864872512 scopus 로고    scopus 로고
    • MicroRNAs in autophagy and their emerging roles in crosstalk with apoptosis
    • Xu J., Wang Y., Tan X., Jing H. MicroRNAs in autophagy and their emerging roles in crosstalk with apoptosis. Autophagy 2012, 8:873-882.
    • (2012) Autophagy , vol.8 , pp. 873-882
    • Xu, J.1    Wang, Y.2    Tan, X.3    Jing, H.4
  • 52
    • 84863834241 scopus 로고    scopus 로고
    • Cisplatin-induced downregulation of miR-199a-5p increases drug resistance by activating autophagy in HCC cell
    • Xu N., Zhang J., Shen C., Luo Y., Xia L., Xue F., Xia Q. Cisplatin-induced downregulation of miR-199a-5p increases drug resistance by activating autophagy in HCC cell. Biochem. Biophys. Res. Commun. 2012, 423(4):826-831.
    • (2012) Biochem. Biophys. Res. Commun. , vol.423 , Issue.4 , pp. 826-831
    • Xu, N.1    Zhang, J.2    Shen, C.3    Luo, Y.4    Xia, L.5    Xue, F.6    Xia, Q.7
  • 53
    • 74949090299 scopus 로고    scopus 로고
    • An overview of the molecular mechanism of autophagy
    • Yang Z., Klionsky D.J. An overview of the molecular mechanism of autophagy. Curr. Top. Microbiol. Immunol. 2009, 335:1-32.
    • (2009) Curr. Top. Microbiol. Immunol. , vol.335 , pp. 1-32
    • Yang, Z.1    Klionsky, D.J.2
  • 54
    • 77956404377 scopus 로고    scopus 로고
    • Eaten alive: a history of macroautophagy
    • Yang Z., Klionsky D.J. Eaten alive: a history of macroautophagy. Nat. Cell Biol. 2010, 12:814-822.
    • (2010) Nat. Cell Biol. , vol.12 , pp. 814-822
    • Yang, Z.1    Klionsky, D.J.2
  • 55
    • 77951214016 scopus 로고    scopus 로고
    • Mammalian autophagy: core molecular machinery and signaling regulation
    • Yang Z., Klionsky D.J. Mammalian autophagy: core molecular machinery and signaling regulation. Curr. Opin. Cell Biol. 2010, 22:124-131.
    • (2010) Curr. Opin. Cell Biol. , vol.22 , pp. 124-131
    • Yang, Z.1    Klionsky, D.J.2
  • 56
    • 84873619831 scopus 로고    scopus 로고
    • MicroRNA: a third dimension in autophagy
    • Zhai H., Fesler A., Ju J. MicroRNA: a third dimension in autophagy. Cell Cycle 2013, 12:246-250.
    • (2013) Cell Cycle , vol.12 , pp. 246-250
    • Zhai, H.1    Fesler, A.2    Ju, J.3
  • 57
    • 84876408458 scopus 로고    scopus 로고
    • Activation of lysosomal function in the course of autophagy via mTORC1 suppression and autophagosome-lysosome fusion
    • Zhou J., Tan S.-H., Nicolas V., Bauvy C., Yang N.-D., Zhang J., Xue Y., Codogno P., Shen H.-M. Activation of lysosomal function in the course of autophagy via mTORC1 suppression and autophagosome-lysosome fusion. Cell Res. 2013, 23:508-523.
    • (2013) Cell Res. , vol.23 , pp. 508-523
    • Zhou, J.1    Tan, S.-H.2    Nicolas, V.3    Bauvy, C.4    Yang, N.-D.5    Zhang, J.6    Xue, Y.7    Codogno, P.8    Shen, H.-M.9
  • 58
    • 69449097865 scopus 로고    scopus 로고
    • Regulation of autophagy by a beclin 1-targeted microRNA, miR-30a, in cancer cells
    • Zhu H., Wu H., Liu X., Li B., Chen Y., Ren X., Liu C.-G., Yang J.-M. Regulation of autophagy by a beclin 1-targeted microRNA, miR-30a, in cancer cells. Autophagy 2009, 5:816-823.
    • (2009) Autophagy , vol.5 , pp. 816-823
    • Zhu, H.1    Wu, H.2    Liu, X.3    Li, B.4    Chen, Y.5    Ren, X.6    Liu, C.-G.7    Yang, J.-M.8


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