ISMapper: Identifying transposase insertion sites in bacterial genomes from short read sequence data

BMC Genomics

Volumn 16, Issue 1, 2015, Pages

  Hawkey, Jane ^a,b   Hamidian, Mohammad ^c   Wick, Ryan R ^a   Edwards, David J ^a   Billman Jacobe, Helen ^b   Hall, Ruth M ^c   Holt, Kathryn E ^a  

^a UNIVERSITY OF MELBOURNE   (Australia)

^b UNIVERSITY OF MELBOURNE   (Australia)

^c UNIVERSITY OF SYDNEY   (Australia)

Author keywords

Antimicrobial resistance; Bacteria; Genomics; Insertion sequence (IS); Short read analysis; Tuberculosis

Indexed keywords

BETA LACTAMASE AMPC; CEPHALOSPORIN DERIVATIVE; TRANSPOSASE;

ACINETOBACTER BAUMANNII; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENOME; BACTERIUM ISOLATE; ESCHERICHIA COLI O157; GENE INSERTION SEQUENCE; GENE MAPPING; GENE SEQUENCE; ISMAPPER; KLEBSIELLA PNEUMONIAE; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PHENOTYPE; POLYMERASE CHAIN REACTION; SALMONELLA ENTERICA SEROVAR PARATYPHI A; SALMONELLA ENTERICA SEROVAR TYPHI; SALMONELLA ENTERICA SEROVAR TYPHIMURIUM; YERSINIA PESTIS; COMPUTER SIMULATION; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; REPRODUCIBILITY; SOFTWARE;

ACINETOBACTER BAUMANNII; BASE SEQUENCE; COMPUTER SIMULATION; DRUG RESISTANCE, MICROBIAL; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; MYCOBACTERIUM TUBERCULOSIS; POLYMERASE CHAIN REACTION; REPRODUCIBILITY OF RESULTS; SEQUENCE ANALYSIS, DNA; SOFTWARE; TRANSPOSASES;

EID: 84940529851     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-1860-2     Document Type: Article

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