-
2
-
-
33846515640
-
Myelodysplastic syndromes: The complexity of stem-cell diseases
-
Corey SJ, et al. (2007) Myelodysplastic syndromes: The complexity of stem-cell diseases. Nat Rev Cancer 7(2):118-129.
-
(2007)
Nat Rev Cancer
, vol.7
, Issue.2
, pp. 118-129
-
-
Corey, S.J.1
-
3
-
-
80053900941
-
Frequent pathway mutations of splicing machinery in myelodysplasia
-
Yoshida K, et al. (2011) Frequent pathway mutations of splicing machinery in myelodysplasia. Nature 478(7367):64-69.
-
(2011)
Nature
, vol.478
, Issue.7367
, pp. 64-69
-
-
Yoshida, K.1
-
4
-
-
84893772765
-
Landscape of genetic lesions in 944 patients with myelodysplastic syndromes
-
Haferlach T, et al. (2014) Landscape of genetic lesions in 944 patients with myelodysplastic syndromes. Leukemia 28(2):241-247.
-
(2014)
Leukemia
, vol.28
, Issue.2
, pp. 241-247
-
-
Haferlach, T.1
-
5
-
-
84859856420
-
Frequency and prognostic impact of mutations in SRSF2, U2AF1, and ZRSR2 in patients with myelodysplastic syndromes
-
Thol F, et al. (2012) Frequency and prognostic impact of mutations in SRSF2, U2AF1, and ZRSR2 in patients with myelodysplastic syndromes. Blood 119(15):3578-3584.
-
(2012)
Blood
, vol.119
, Issue.15
, pp. 3578-3584
-
-
Thol, F.1
-
6
-
-
84867801670
-
The clinical implication of SRSF2 mutation in patients with myelodysplastic syndrome and its stability during disease evolution
-
Wu SJ, et al. (2012) The clinical implication of SRSF2 mutation in patients with myelodysplastic syndrome and its stability during disease evolution. Blood 120(15):3106-3111.
-
(2012)
Blood
, vol.120
, Issue.15
, pp. 3106-3111
-
-
Wu, S.J.1
-
7
-
-
84929162813
-
SRSF2 mutations contribute to myelodysplasia by mutant-specific effects on exon recognition
-
Kim E, et al. (2015) SRSF2 mutations contribute to myelodysplasia by mutant-specific effects on exon recognition. Cancer Cell 27(5):617-630.
-
(2015)
Cancer Cell
, vol.27
, Issue.5
, pp. 617-630
-
-
Kim, E.1
-
8
-
-
78049416081
-
Alternative pre-mRNA splicing regulation in cancer: Pathways and programs unhinged
-
David CJ, Manley JL (2010) Alternative pre-mRNA splicing regulation in cancer: Pathways and programs unhinged. Genes Dev 24(21):2343-2364.
-
(2010)
Genes Dev
, vol.24
, Issue.21
, pp. 2343-2364
-
-
David, C.J.1
Manley, J.L.2
-
9
-
-
84887460995
-
Misregulation of pre-mRNA alternative splicing in cancer
-
Zhang J, Manley JL (2013) Misregulation of pre-mRNA alternative splicing in cancer. Cancer Discov 3(11):1228-1237.
-
(2013)
Cancer Discov
, vol.3
, Issue.11
, pp. 1228-1237
-
-
Zhang, J.1
Manley, J.L.2
-
10
-
-
58249093940
-
The SR protein family of splicing factors: Master regulators of gene expression
-
Long JC, Caceres JF (2009) The SR protein family of splicing factors: Master regulators of gene expression. Biochem J 417(1):15-27.
-
(2009)
Biochem J
, vol.417
, Issue.1
, pp. 15-27
-
-
Long, J.C.1
Caceres, J.F.2
-
11
-
-
0029064220
-
The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities
-
Tacke R, Manley JL (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J 14(14):3540-3551.
-
(1995)
EMBO J
, vol.14
, Issue.14
, pp. 3540-3551
-
-
Tacke, R.1
Manley, J.L.2
-
12
-
-
0027137934
-
Specific interactions between proteins implicated in splice site selection and regulated alternative splicing
-
Wu JY, Maniatis T (1993) Specific interactions between proteins implicated in splice site selection and regulated alternative splicing. Cell 75(6):1061-1070.
-
(1993)
Cell
, vol.75
, Issue.6
, pp. 1061-1070
-
-
Wu, J.Y.1
Maniatis, T.2
-
13
-
-
0028289188
-
Protein-protein interactions and 5?-splice-site recognition in mammalian mRNA precursors
-
Kohtz JD, et al. (1994) Protein-protein interactions and 5?-splice-site recognition in mammalian mRNA precursors. Nature 368(6467):119-124.
-
(1994)
Nature
, vol.368
, Issue.6467
, pp. 119-124
-
-
Kohtz, J.D.1
-
14
-
-
84888219405
-
Clinical and biological implications of driver mutations in myelodysplastic syndromes
-
Chronic Myeloid Disorders Working Group of the International Cancer Genome Consortium quiz 3699
-
Papaemmanuil E, et al.; Chronic Myeloid Disorders Working Group of the International Cancer Genome Consortium (2013) Clinical and biological implications of driver mutations in myelodysplastic syndromes. Blood 122(22):3616-3627, quiz 3699.
-
(2013)
Blood
, vol.122
, Issue.22
, pp. 3616-3627
-
-
Papaemmanuil, E.1
-
15
-
-
84855343723
-
A syn-anti conformational difference allows SRSF2 to recognize guanines and cytosines equally well
-
Daubner GM, Cléry A, Jayne S, Stevenin J, Allain FH (2012) A syn-anti conformational difference allows SRSF2 to recognize guanines and cytosines equally well. EMBO J 31(1):162-174.
-
(2012)
EMBO J
, vol.31
, Issue.1
, pp. 162-174
-
-
Daubner, G.M.1
Cléry, A.2
Jayne, S.3
Stevenin, J.4
Allain, F.H.5
-
16
-
-
84919936245
-
RMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
-
Shen S, et al. (2014) rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data. Proc Natl Acad Sci USA 111(51):E5593-E5601.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.51
, pp. 5593-5601
-
-
Shen, S.1
-
17
-
-
72949113230
-
Emerging roles of ATF2 and the dynamic AP1 network in cancer
-
Lopez-Bergami P, Lau E, Ronai Z (2010) Emerging roles of ATF2 and the dynamic AP1 network in cancer. Nat Rev Cancer 10(1):65-76.
-
(2010)
Nat Rev Cancer
, vol.10
, Issue.1
, pp. 65-76
-
-
Lopez-Bergami, P.1
Lau, E.2
Ronai, Z.3
-
18
-
-
0035183256
-
The deoxyguanosine kinase gene is mutated in individuals with depleted hepatocerebral mitochondrial DNA
-
Mandel H, et al. (2001) The deoxyguanosine kinase gene is mutated in individuals with depleted hepatocerebral mitochondrial DNA. Nat Genet 29(3):337-341.
-
(2001)
Nat Genet
, vol.29
, Issue.3
, pp. 337-341
-
-
Mandel, H.1
-
20
-
-
65949102982
-
CDK5RAP2 is required for spindle checkpoint function
-
Zhang X, et al. (2009) CDK5RAP2 is required for spindle checkpoint function. Cell Cycle 8(8):1206-1216.
-
(2009)
Cell Cycle
, vol.8
, Issue.8
, pp. 1206-1216
-
-
Zhang, X.1
-
21
-
-
0033575885
-
EPS8 and E3B1 transduce signals from Ras to Rac
-
Scita G, et al. (1999) EPS8 and E3B1 transduce signals from Ras to Rac. Nature 401(6750):290-293.
-
(1999)
Nature
, vol.401
, Issue.6750
, pp. 290-293
-
-
Scita, G.1
-
22
-
-
0029960469
-
Cdc45p assembles into a complex with Cdc46p/Mcm5p, is required for minichromosome maintenance, and is essential for chromosomal DNA replication
-
Hopwood B, Dalton S (1996) Cdc45p assembles into a complex with Cdc46p/Mcm5p, is required for minichromosome maintenance, and is essential for chromosomal DNA replication. Proc Natl Acad Sci USA 93(22):12309-12314.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, Issue.22
, pp. 12309-12314
-
-
Hopwood, B.1
Dalton, S.2
-
23
-
-
84887197887
-
Maternal embryonic leucine zipper kinase (MELK): A novel regulator in cell cycle control, embryonic development, and cancer
-
Jiang P, Zhang D (2013) Maternal embryonic leucine zipper kinase (MELK): A novel regulator in cell cycle control, embryonic development, and cancer. Int J Mol Sci 14(11):21551-21560.
-
(2013)
Int J Mol Sci
, vol.14
, Issue.11
, pp. 21551-21560
-
-
Jiang, P.1
Zhang, D.2
-
24
-
-
84870913730
-
Exome sequencing reveals de novo WDR45 mutations causing a phenotypically distinct X-linked dominant form of NBIA
-
Haack TB, et al. (2012) Exome sequencing reveals De novo WDR45 mutations causing a phenotypically distinct, X-linked dominant form of NBIA. Am J Hum Genet 91(6): 1144-1149.
-
(2012)
Am J Hum Genet
, vol.91
, Issue.6
, pp. 1144-1149
-
-
Haack, T.B.1
-
25
-
-
84898730826
-
A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age
-
Familial Breast Cancer Study
-
Ahsan H, et al.; Familial Breast Cancer Study (2014) A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age. Cancer Epidemiol Biomarkers Prev 23(4):658-669.
-
(2014)
Cancer Epidemiol Biomarkers Prev
, vol.23
, Issue.4
, pp. 658-669
-
-
Ahsan, H.1
-
26
-
-
1842844280
-
Identification of the human mitochondrial S-adenosylmethionine transporter: Bacterial expression, reconstitution, functional characterization and tissue distribution
-
Agrimi G, et al. (2004) Identification of the human mitochondrial S-adenosylmethionine transporter: Bacterial expression, reconstitution, functional characterization and tissue distribution. Biochem J 379(Pt 1):183-190.
-
(2004)
Biochem J
, vol.379
, pp. 183-190
-
-
Agrimi, G.1
-
27
-
-
0033017499
-
The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers
-
Cavaloc Y, Bourgeois CF, Kister L, Stévenin J (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA 5(3):468-483.
-
(1999)
RNA
, vol.5
, Issue.3
, pp. 468-483
-
-
Cavaloc, Y.1
Bourgeois, C.F.2
Kister, L.3
Stévenin, J.4
-
28
-
-
0033019048
-
Selection and characterization of pre-mRNA splicing enhancers: Identification of novel SR protein-specific enhancer sequences
-
Schaal TD, Maniatis T (1999) Selection and characterization of pre-mRNA splicing enhancers: Identification of novel SR protein-specific enhancer sequences. Mol Cell Biol 19(3):1705-1719.
-
(1999)
Mol Cell Biol
, vol.19
, Issue.3
, pp. 1705-1719
-
-
Schaal, T.D.1
Maniatis, T.2
-
29
-
-
77950342256
-
Antagonistic factors control the unproductive splicing of SC35 terminal intron
-
Dreumont N, et al. (2010) Antagonistic factors control the unproductive splicing of SC35 terminal intron. Nucleic Acids Res 38(4):1353-1366.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.4
, pp. 1353-1366
-
-
Dreumont, N.1
-
30
-
-
4544346598
-
An exonic splicing enhancer offsets the atypical GU-rich 3 splice site of human apolipoprotein A-II exon 3
-
Arrisi-Mercado P, Romano M, Muro AF, Baralle FE (2004) An exonic splicing enhancer offsets the atypical GU-rich 3? splice site of human apolipoprotein A-II exon 3. J Biol Chem 279(38):39331-39339.
-
(2004)
J Biol Chem
, vol.279
, Issue.38
, pp. 39331-39339
-
-
Arrisi-Mercado, P.1
Romano, M.2
Muro, A.F.3
Baralle, F.E.4
-
31
-
-
1642372088
-
SC35 and heterogeneous nuclear ribonucleoprotein A/B proteins bind to a juxtaposed exonic splicing enhancer/exonic splicing silencer element to regulate HIV-1 tat exon 2 splicing
-
Zahler AM, Damgaard CK, Kjems J, Caputi M (2004) SC35 and heterogeneous nuclear ribonucleoprotein A/B proteins bind to a juxtaposed exonic splicing enhancer/exonic splicing silencer element to regulate HIV-1 tat exon 2 splicing. J Biol Chem 279(11): 10077-10084.
-
(2004)
J Biol Chem
, vol.279
, Issue.11
, pp. 10077-10084
-
-
Zahler, A.M.1
Damgaard, C.K.2
Kjems, J.3
Caputi, M.4
-
32
-
-
33845993932
-
Biochemical and NMR study on the competition between proteins SC35, SRp40, and heterogeneous nuclear ribonucleoprotein A1 at the HIV-1 Tat exon 2 splicing site
-
Hallay H, et al. (2006) Biochemical and NMR study on the competition between proteins SC35, SRp40, and heterogeneous nuclear ribonucleoprotein A1 at the HIV-1 Tat exon 2 splicing site. J Biol Chem 281(48):37159-37174.
-
(2006)
J Biol Chem
, vol.281
, Issue.48
, pp. 37159-37174
-
-
Hallay, H.1
-
33
-
-
0037083819
-
SR proteins and hnRNP H regulate the splicing of the HIV-1 tev-specific exon 6D
-
Caputi M, Zahler AM (2002) SR proteins and hnRNP H regulate the splicing of the HIV-1 tev-specific exon 6D. EMBO J 21(4):845-855.
-
(2002)
EMBO J
, vol.21
, Issue.4
, pp. 845-855
-
-
Caputi, M.1
Zahler, A.M.2
-
34
-
-
80051737020
-
Regulation of the alternative splicing of tau exon 10 by SC35 and Dyrk1A
-
Qian W, et al. (2011) Regulation of the alternative splicing of tau exon 10 by SC35 and Dyrk1A. Nucleic Acids Res 39(14):6161-6171.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.14
, pp. 6161-6171
-
-
Qian, W.1
-
35
-
-
0032947182
-
Multiple distinct splicing enhancers in the protein-coding sequences of a constitutively spliced pre-mRNA
-
Schaal TD, Maniatis T (1999) Multiple distinct splicing enhancers in the protein-coding sequences of a constitutively spliced pre-mRNA. Mol Cell Biol 19(1):261-273.
-
(1999)
Mol Cell Biol
, vol.19
, Issue.1
, pp. 261-273
-
-
Schaal, T.D.1
Maniatis, T.2
-
36
-
-
22544464444
-
ASF/SF2 and SC35 regulate the glutamate receptor subunit 2 alternative flip/flop splicing
-
Crovato TE, Egebjerg J (2005) ASF/SF2 and SC35 regulate the glutamate receptor subunit 2 alternative flip/flop splicing. FEBS Lett 579(19):4138-4144.
-
(2005)
FEBS Lett
, vol.579
, Issue.19
, pp. 4138-4144
-
-
Crovato, T.E.1
Egebjerg, J.2
-
37
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
(Web Server issue)
-
Bailey TL, et al. (2009) MEME SUITE: Tools for motif discovery and searching. Nucleic Acids Res 37(Web Server issue):W202-208.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 202-208
-
-
Bailey, T.L.1
-
38
-
-
0031878108
-
A potential role for U2AF-SAP 155 interactions in recruiting U2 snRNP to the branch site
-
Gozani O, Potashkin J, Reed R (1998) A potential role for U2AF-SAP 155 interactions in recruiting U2 snRNP to the branch site. Mol Cell Biol 18(8):4752-4760.
-
(1998)
Mol Cell Biol
, vol.18
, Issue.8
, pp. 4752-4760
-
-
Gozani, O.1
Potashkin, J.2
Reed, R.3
-
39
-
-
2042437650
-
International human genome sequencing consortium (2001) initial sequencing and analysis of the human genome
-
and corrections 2001) 411:720 and 2001) 412 565
-
Lander ES, et al.; International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome. Nature 409(6822):860-921, and corrections (2001) 411:720 and (2001) 412:565.
-
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
-
40
-
-
84860385776
-
MATS: A Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data
-
Shen S, et al. (2012) MATS: A Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data. Nucleic Acids Res 40(8):e61.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.8
, pp. e61
-
-
Shen, S.1
-
41
-
-
71949096690
-
Alternative splicing modulates autoinhibition and SH3 accessibility in the Src kinase Fyn
-
Brignatz C, et al. (2009) Alternative splicing modulates autoinhibition and SH3 accessibility in the Src kinase Fyn. Mol Cell Biol 29(24):6438-6448.
-
(2009)
Mol Cell Biol
, vol.29
, Issue.24
, pp. 6438-6448
-
-
Brignatz, C.1
-
42
-
-
0029821113
-
Cytogenetic and molecular delineation of a region of chromosome 7 commonly deleted in malignant myeloid diseases
-
Le Beau MM, et al. (1996) Cytogenetic and molecular delineation of a region of chromosome 7 commonly deleted in malignant myeloid diseases. Blood 88(6):1930-1935.
-
(1996)
Blood
, vol.88
, Issue.6
, pp. 1930-1935
-
-
Le Beau, M.M.1
-
43
-
-
1842295700
-
Molecular cytogenetic delineation of deletions and translocations involving chromosome band 7q22 in myeloid leukemias
-
Fischer K, et al. (1997) Molecular cytogenetic delineation of deletions and translocations involving chromosome band 7q22 in myeloid leukemias. Blood 89(6):2036-2041.
-
(1997)
Blood
, vol.89
, Issue.6
, pp. 2036-2041
-
-
Fischer, K.1
-
44
-
-
0037742196
-
A specific splicing variant of SVH, a novel human armadillo repeat protein, is up-regulated in hepatocellular carcinomas
-
Huang R, et al. (2003) A specific splicing variant of SVH, a novel human armadillo repeat protein, is up-regulated in hepatocellular carcinomas. Cancer Res 63(13):3775-3782.
-
(2003)
Cancer Res
, vol.63
, Issue.13
, pp. 3775-3782
-
-
Huang, R.1
-
45
-
-
34948886775
-
SVH-B interacts directly with p53 and suppresses the transcriptional activity of p53
-
Zhou X, Yang G, Huang R, Chen X, Hu G (2007) SVH-B interacts directly with p53 and suppresses the transcriptional activity of p53. FEBS Lett 581(25):4943-4948.
-
(2007)
FEBS Lett
, vol.581
, Issue.25
, pp. 4943-4948
-
-
Zhou, X.1
Yang, G.2
Huang, R.3
Chen, X.4
Hu, G.5
-
46
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim D, et al. (2013) TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol 14(4):R36.
-
(2013)
Genome Biol
, vol.14
, Issue.4
, pp. 36
-
-
Kim, D.1
-
47
-
-
84928987900
-
HTSeq-a Python framework to work with highthroughput sequencing data
-
Anders S, Pyl PT, Huber W (2015) HTSeq-a Python framework to work with highthroughput sequencing data. Bioinformatics 31(2):166-169.
-
(2015)
Bioinformatics
, vol.31
, Issue.2
, pp. 166-169
-
-
Anders, S.1
Pyl, P.T.2
Huber, W.3
-
48
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love MI, Huber W, Anders S (2014) Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol 15(12):550.
-
(2014)
Genome Biol
, vol.15
, Issue.12
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
49
-
-
84862777397
-
Concentration-dependent control of pyruvate kinase M mutually exclusive splicing by hnRNP proteins
-
Chen M, David CJ, Manley JL (2012) Concentration-dependent control of pyruvate kinase M mutually exclusive splicing by hnRNP proteins. Nat Struct Mol Biol 19(3): 346-354.
-
(2012)
Nat Struct Mol Biol
, vol.19
, Issue.3
, pp. 346-354
-
-
Chen, M.1
David, C.J.2
Manley, J.L.3
|