메뉴 건너뛰기




Volumn 290, Issue 31, 2015, Pages 19121-19132

Nephron toxicity profiling via untargeted metabolome analysis employing a high performance liquid chromatography-mass spectrometry-based experimental and computational pipeline

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; DRUG PRODUCTS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; RISK ASSESSMENT; TOXICITY;

EID: 84940504861     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M115.644146     Document Type: Article
Times cited : (10)

References (47)
  • 1
    • 0036007687 scopus 로고    scopus 로고
    • Metabolomics: The link between genotypes and phenotypes
    • Fiehn, O. (2002) Metabolomics: The link between genotypes and phenotypes. Plant Mol. Biol. 48, 155-171
    • (2002) Plant Mol. Biol. , vol.48 , pp. 155-171
    • Fiehn, O.1
  • 5
    • 84928203667 scopus 로고    scopus 로고
    • Global LC/MS metabolomics profiling of calcium stressed and immunosuppressant drug treated Saccharomyces cerevisiae
    • Jenkins, S., Fischer, S. M., Chen, L., and Sana, T. R. (2013) Global LC/MS metabolomics profiling of calcium stressed and immunosuppressant drug treated Saccharomyces cerevisiae. Metabolites 3, 1102-1117
    • (2013) Metabolites , vol.3 , pp. 1102-1117
    • Jenkins, S.1    Fischer, S.M.2    Chen, L.3    Sana, T.R.4
  • 9
    • 77954817641 scopus 로고    scopus 로고
    • Predicting human developmental toxicity of pharmaceuticals using human embryonic stem cells and metabolomics
    • West, P. R., Weir, A. M., Smith, A. M., Donley, E. L., and Cezar, G. G. (2010) Predicting human developmental toxicity of pharmaceuticals using human embryonic stem cells and metabolomics. Toxicol. Appl. Pharmacol. 247, 18-27
    • (2010) Toxicol. Appl. Pharmacol. , vol.247 , pp. 18-27
    • West, P.R.1    Weir, A.M.2    Smith, A.M.3    Donley, E.L.4    Cezar, G.G.5
  • 10
    • 79956224108 scopus 로고    scopus 로고
    • An untargeted multi-technique metabolomics approach to studying intracellular metabolites of HepG2 cells exposed to 2,3,7,8-tetrachlorodibenzop-dioxin
    • Ruiz-Aracama, A., Peijnenburg, A., Kleinjans, J., Jennen, D., Van Delft, J., Hellfrisch, C., and Lommen, A. (2011) An untargeted multi-technique metabolomics approach to studying intracellular metabolites of HepG2 cells exposed to 2,3,7,8-tetrachlorodibenzop-dioxin. BMC Genomics 12, 251-269
    • (2011) BMC Genomics , vol.12 , pp. 251-269
    • Ruiz-Aracama, A.1    Peijnenburg, A.2    Kleinjans, J.3    Jennen, D.4    Van Delft, J.5    Hellfrisch, C.6    Lommen, A.7
  • 11
    • 78650907092 scopus 로고    scopus 로고
    • Applications of liquid chromatography coupled to mass spectrometry-based metabolomics in clinical chemistry and toxicology: A review
    • Roux, A., Lison, D., Junot, C., and Heilier, J. F. (2011) Applications of liquid chromatography coupled to mass spectrometry-based metabolomics in clinical chemistry and toxicology: A review. Clin. Biochem. 44, 119-135
    • (2011) Clin. Biochem. , vol.44 , pp. 119-135
    • Roux, A.1    Lison, D.2    Junot, C.3    Heilier, J.F.4
  • 14
    • 83455250219 scopus 로고    scopus 로고
    • Separation strategies for untargeted metabolomics
    • Patti, G. J. (2011) Separation strategies for untargeted metabolomics. J. Sep. Sci. 34, 3460-3469
    • (2011) J. Sep. Sci. , vol.34 , pp. 3460-3469
    • Patti, G.J.1
  • 15
    • 84858790233 scopus 로고    scopus 로고
    • Innovation: Metabolomics: The apogee of the omics trilogy
    • Patti, G. J., Yanes, O., and Siuzdak, G. (2012) Innovation: Metabolomics: The apogee of the omics trilogy. Nat. Rev. Mol. Cell Biol. 13, 263-269
    • (2012) Nat. Rev. Mol. Cell Biol. , vol.13 , pp. 263-269
    • Patti, G.J.1    Yanes, O.2    Siuzdak, G.3
  • 16
    • 32444446805 scopus 로고    scopus 로고
    • XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
    • Smith, C. A., Want, E. J., O'Maille, G., Abagyan, R., and Siuzdak, G. (2006) XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal. Chem. 78, 779-787
    • (2006) Anal. Chem. , vol.78 , pp. 779-787
    • Smith, C.A.1    Want, E.J.2    O'Maille, G.3    Abagyan, R.4    Siuzdak, G.5
  • 17
    • 65249132985 scopus 로고    scopus 로고
    • MetAlign: Interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing
    • Lommen, A. (2009) MetAlign: Interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing. Anal. Chem. 81, 3079-3086
    • (2009) Anal. Chem. , vol.81 , pp. 3079-3086
    • Lommen, A.1
  • 18
    • 77954772536 scopus 로고    scopus 로고
    • MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
    • Pluskal, T., Castillo, S., Villar-Briones, A., and Oresic, M. (2010) MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinformatics 11, 395
    • (2010) BMC Bioinformatics , vol.11 , pp. 395
    • Pluskal, T.1    Castillo, S.2    Villar-Briones, A.3    Oresic, M.4
  • 19
    • 79953267955 scopus 로고    scopus 로고
    • PeakML/mzMatch: A file format, Java library, R library, and tool-chain for mass spectrometry data analysis
    • Scheltema, R. A., Jankevics, A., Jansen, R. C., Swertz, M. A., and Breitling, R. (2011) PeakML/mzMatch: A file format, Java library, R library, and tool-chain for mass spectrometry data analysis. Anal. Chem. 83, 2786-2793
    • (2011) Anal. Chem. , vol.83 , pp. 2786-2793
    • Scheltema, R.A.1    Jankevics, A.2    Jansen, R.C.3    Swertz, M.A.4    Breitling, R.5
  • 25
    • 0016846996 scopus 로고
    • Letter: Molecular structure of the carcinostat isophosphamide
    • Brassfield, H. A., Jacobson, R. A., and Verkade, J. G. (1975) Letter: Molecular structure of the carcinostat isophosphamide. J. Am. Chem. Soc. 97, 4143-4144
    • (1975) J. Am. Chem. Soc. , vol.97 , pp. 4143-4144
    • Brassfield, H.A.1    Jacobson, R.A.2    Verkade, J.G.3
  • 31
    • 84863609997 scopus 로고    scopus 로고
    • TOPPAS: A graphical workflow editor for the analysis of highthroughput proteomics data
    • Junker, J., Bielow, C., Bertsch, A., Sturm, M., Reinert, K., and Kohlbacher, O. (2012) TOPPAS: A graphical workflow editor for the analysis of highthroughput proteomics data. J. Proteome Res. 11, 3914-3920
    • (2012) J. Proteome Res. , vol.11 , pp. 3914-3920
    • Junker, J.1    Bielow, C.2    Bertsch, A.3    Sturm, M.4    Reinert, K.5    Kohlbacher, O.6
  • 34
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Smyth, G. K. (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet Mol. 3, Article3
    • (2004) Stat. Appl. Genet Mol. , vol.3
    • Smyth, G.K.1
  • 35
    • 0025066941 scopus 로고
    • More powerful procedures for multiple significance testing
    • Hochberg, Y., and Benjamini, Y. (1990) More powerful procedures for multiple significance testing. Stat. Med. 9, 811-818
    • (1990) Stat. Med. , vol.9 , pp. 811-818
    • Hochberg, Y.1    Benjamini, Y.2
  • 39
    • 77958524801 scopus 로고    scopus 로고
    • Should we abandon the t-test in the analysis of gene expression microarray data? a comparison of variance modeling strategies
    • Jeanmougin, M., De Reynies, A., Marisa, L., Paccard, C., Nuel, G., and Guedj, M. (2010) Should we abandon the t-test in the analysis of gene expression microarray data?: A comparison of variance modeling strategies. PLoS One 5, e12336
    • (2010) PLoS One , vol.5 , pp. e12336
    • Jeanmougin, M.1    De Reynies, A.2    Marisa, L.3    Paccard, C.4    Nuel, G.5    Guedj, M.6
  • 40
    • 0033404995 scopus 로고    scopus 로고
    • Automation of a Fourier transform ion cyclotron resonance mass spectrometer for acquisition, analysis, and E-mailing of high-resolution exact-mass electrospray ionization mass spectral data
    • Huang, N., Siegel, M. M., Kruppa, G. H., and Laukien, F. H. (1999) Automation of a Fourier transform ion cyclotron resonance mass spectrometer for acquisition, analysis, and E-mailing of high-resolution exact-mass electrospray ionization mass spectral data. J. Am. Soc. Mass Spectr. 10, 1166-1173
    • (1999) J. Am. Soc. Mass Spectr. , vol.10 , pp. 1166-1173
    • Huang, N.1    Siegel, M.M.2    Kruppa, G.H.3    Laukien, F.H.4
  • 43
    • 84864826447 scopus 로고    scopus 로고
    • Pyroglutamic acid: Throwing light on a lightly studied metabolite
    • Kumar A., and Bachhawat, A. K. (2012) Pyroglutamic acid: Throwing light on a lightly studied metabolite. Curr. Sci. 102, 288-297
    • (2012) Curr. Sci. , vol.102 , pp. 288-297
    • Kumar, A.1    Bachhawat, A.K.2
  • 46
    • 17044429015 scopus 로고    scopus 로고
    • Oxidative stress on mitochondrial antioxidant defense system in the aging process: Role of DL-lipoic acid and l-carnitine
    • Savitha, S., Tamilselvan, J., Anusuyadevi, M., and Panneerselvam, C. (2005) Oxidative stress on mitochondrial antioxidant defense system in the aging process: Role of DL-lipoic acid and l-carnitine. Clin. Chim. Acta 355, 173-180
    • (2005) Clin. Chim. Acta , vol.355 , pp. 173-180
    • Savitha, S.1    Tamilselvan, J.2    Anusuyadevi, M.3    Panneerselvam, C.4
  • 47
    • 0142043994 scopus 로고    scopus 로고
    • Protection by pantothenic acid against apoptosis and cell damage by oxygen free radicals: The role of glutathione
    • Wojtczak, L., and Slyshenkov, V. S. (2003) Protection by pantothenic acid against apoptosis and cell damage by oxygen free radicals: The role of glutathione. BioFactors 17, 61-73
    • (2003) BioFactors , vol.17 , pp. 61-73
    • Wojtczak, L.1    Slyshenkov, V.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.