-
1
-
-
84876271982
-
The African coelacanth genome provides insights into tetrapod evolution
-
Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, Gerdol M, Aken B, Biscotti MA, Barucca M, Baurain D, Berlin AM, Blatch GL, Buonocore F, Burmester T, Campbell MS, Canapa A, Cannon JP, Christoffels A, De Moro G, Edkins AL, Fan L, Fausto AM, Feiner N, Forconi M, Gamieldien J, Gnerre S, Gnirke A, Goldstone JV, Haerty W, Hahn ME, Hesse U, Hoffmann S, Johnson J, Karchner SI, Kuraku S, Lara M, Levin JZ, Litman GW, Mauceli E, Miyake T, Mueller MG, Nelson DR, Nitsche A, Olmo E, Ota T, Pallavicini A, Panji S, Picone B, Ponting CP, Prohaska SJ, Przybylski D, Saha NR, Ravi V, Ribeiro FJ, Sauka-Spengler T, Scapigliati G, Searle SM, Sharpe T, Simakov O, Stadler PF, Stegeman JJ, Sumiyama K, Tabbaa D, Tafer H, Turner-Maier J, van Heusden P, White S, Williams L, Yandell M, Brinkmann H, Volff JN, Tabin CJ, Shubin N, Schartl M, Jaffe DB, Postlethwait JH, Venkatesh B, Di Palma F, Lander ES, Meyer A, Lindblad-Toh K. 2013. The African coelacanth genome provides insights into tetrapod evolution. Nature 496:311-316. doi: 10.1038/nature12027.
-
(2013)
Nature
, vol.496
, pp. 311-316
-
-
Amemiya, C.T.1
Alföldi, J.2
Lee, A.P.3
Fan, S.4
Philippe, H.5
Maccallum, I.6
Braasch, I.7
Manousaki, T.8
Schneider, I.9
Rohner, N.10
Organ, C.11
Chalopin, D.12
Smith, J.J.13
Robinson, M.14
Dorrington, R.A.15
Gerdol, M.16
Aken, B.17
Biscotti, M.A.18
Barucca, M.19
Baurain, D.20
Berlin, A.M.21
Blatch, G.L.22
Buonocore, F.23
Burmester, T.24
Campbell, M.S.25
Canapa, A.26
Cannon, J.P.27
Christoffels, A.28
De Moro, G.29
Edkins, A.L.30
Fan, L.31
Fausto, A.M.32
Feiner, N.33
Forconi, M.34
Gamieldien, J.35
Gnerre, S.36
Gnirke, A.37
Goldstone, J.V.38
Haerty, W.39
Hahn, M.E.40
Hesse, U.41
Hoffmann, S.42
Johnson, J.43
Karchner, S.I.44
Kuraku, S.45
Lara, M.46
Levin, J.Z.47
Litman, G.W.48
Mauceli, E.49
Miyake, T.50
Mueller, M.G.51
Nelson, D.R.52
Nitsche, A.53
Olmo, E.54
Ota, T.55
Pallavicini, A.56
Panji, S.57
Picone, B.58
Ponting, C.P.59
Prohaska, S.J.60
Przybylski, D.61
Saha, N.R.62
Ravi, V.63
Ribeiro, F.J.64
Sauka-Spengler, T.65
Scapigliati, G.66
Searle, S.M.67
Sharpe, T.68
Simakov, O.69
Stadler, P.F.70
Stegeman, J.J.71
Sumiyama, K.72
Tabbaa, D.73
Tafer, H.74
Turner-Maier, J.75
van Heusden, P.76
White, S.77
Williams, L.78
Yandell, M.79
Brinkmann, H.80
Volff, J.N.81
Tabin, C.J.82
Shubin, N.83
Schartl, M.84
Jaffe, D.B.85
Postlethwait, J.H.86
Venkatesh, B.87
Di Palma, F.88
Lander, E.S.89
Meyer, A.90
Lindblad-Toh, K.91
more..
-
2
-
-
84856094426
-
Gene regulatory logic for reading the sonic hedgehog signaling gradient in the vertebrate neural tube
-
Balaskas N, Ribeiro A, Panovska J, Dessaud E, Sasai N, Page KM, Briscoe J, Ribes V. 2012. Gene regulatory logic for reading the sonic hedgehog signaling gradient in the vertebrate neural tube. Cell 148:273-284. doi: 10.1016/ j.cell.2011.10.047.
-
(2012)
Cell
, vol.148
, pp. 273-284
-
-
Balaskas, N.1
Ribeiro, A.2
Panovska, J.3
Dessaud, E.4
Sasai, N.5
Page, K.M.6
Briscoe, J.7
Ribes, V.8
-
3
-
-
84993917293
-
A series of normal stages for development of Scyliorhinus canicula, the lesser spotted dogfish (Chondrichthyes: Scyliorhinidae)
-
Ballard WW, Mellinger J, Lechenault H. 1993. A series of normal stages for development of Scyliorhinus canicula, the lesser spotted dogfish (Chondrichthyes: Scyliorhinidae). Journal of Experimental Zoology 267:318-336. doi: 10.1002/jez.1402670309.
-
(1993)
Journal of Experimental Zoology
, vol.267
, pp. 318-336
-
-
Ballard, W.W.1
Mellinger, J.2
Lechenault, H.3
-
4
-
-
22444446048
-
Gli3 and Plzf cooperate in proximal limb patterning at early stages of limb development
-
Barna M, Pandolfi PP, Niswander L. 2005. Gli3 and Plzf cooperate in proximal limb patterning at early stages of limb development. Nature 436:277-281. doi: 10.1038/nature03801.
-
(2005)
Nature
, vol.436
, pp. 277-281
-
-
Barna, M.1
Pandolfi, P.P.2
Niswander, L.3
-
5
-
-
0028241951
-
An ancient family of embryonically expressed mouse genes sharing a conserved protein motif with the T-locus
-
Bollag RJ, Siegfried Z, Cebra-Thomas J, Garvey N, Davison EM, Silver LM. 1994a. An ancient family of embryonically expressed mouse genes sharing a conserved protein motif with the T-locus. Nature Genetics 7:383-389.
-
(1994)
Nature Genetics
, vol.7
, pp. 383-389
-
-
Bollag, R.J.1
Siegfried, Z.2
Cebra-Thomas, J.3
Garvey, N.4
Davison, E.M.5
Silver, L.M.6
-
6
-
-
84940477112
-
-
NCBI Nucleotide NM_009324
-
Bollag RJ, Siegfried Z, Cebra-Thomas J, Garvey N, Davison EM, Silver LM. 1994b. Mus musculus T-box 2 (Tbx2), mRNA. NCBI Nucleotide NM_009324. http://www.ncbi.nlm.nih.gov/nuccore/120407038.
-
(1994)
Mus musculus T-box 2 (Tbx2), mRNA
-
-
Bollag, R.J.1
Siegfried, Z.2
Cebra-Thomas, J.3
Garvey, N.4
Davison, E.M.5
Silver, L.M.6
-
7
-
-
4944262040
-
Glocal alignment: Finding rearrangements during alignment
-
Brudno M, Malde S, Poliakov A, Do CB, Couronne O, Dubchak I, Batzoglou S. 2003. Glocal alignment: finding rearrangements during alignment. Bioinformatics 19(Suppl 1):i54-i62. doi: 10.1093/bioinformatics/btg1005.
-
(2003)
Bioinformatics
, vol.19
, pp. i54-i62
-
-
Brudno, M.1
Malde, S.2
Poliakov, A.3
Do, C.B.4
Couronne, O.5
Dubchak, I.6
Batzoglou, S.7
-
8
-
-
0040976312
-
Evidence for genetic control of Sonic hedgehog by Gli3 in mouse limb development
-
Büscher D, Bosse B, Heymer J, Rüther U. 1997. Evidence for genetic control of Sonic hedgehog by Gli3 in mouse limb development. Mechanisms of Development 62:175-182. doi: 10.1016/S0925-4773(97)00656-4.
-
(1997)
Mechanisms of Development
, vol.62
, pp. 175-182
-
-
Büscher, D.1
Bosse, B.2
Heymer, J.3
Rüther, U.4
-
9
-
-
0037789240
-
The evolution of paired fins
-
Coates M. 2003. The evolution of paired fins. Theory in Biosciences 122:266-287. doi: 10.1007/s12064-003-0057-4.
-
(2003)
Theory in Biosciences
, vol.122
, pp. 266-287
-
-
Coates, M.1
-
11
-
-
33846306331
-
Sonic hedgehog function in chondrichthyan fins and the evolution of appendage patterning
-
Dahn RD, Davis MC, Pappano WN, Shubin NH. 2007. Sonic hedgehog function in chondrichthyan fins and the evolution of appendage patterning. Nature 445:311-314. doi: 10.1038/nature05436.
-
(2007)
Nature
, vol.445
, pp. 311-314
-
-
Dahn, R.D.1
Davis, M.C.2
Pappano, W.N.3
Shubin, N.H.4
-
12
-
-
34249337760
-
An autopodial-like pattern of Hox expression in the fins of a basal actinopterygian fish
-
Davis MC, Dahn RD, Shubin NH. 2007. An autopodial-like pattern of Hox expression in the fins of a basal actinopterygian fish. Nature 447:473-476. doi: 10.1038/nature05838.
-
(2007)
Nature
, vol.447
, pp. 473-476
-
-
Davis, M.C.1
Dahn, R.D.2
Shubin, N.H.3
-
13
-
-
0031912862
-
Embryonic staging and external features of development of the chimaeroid fish, Callorhinchus milii (Holocephali, Callorhinchidae)
-
Didier DA, Leclair EE, Vanbuskirk DR. 1998. Embryonic staging and external features of development of the chimaeroid fish, Callorhinchus milii (Holocephali, Callorhinchidae). Journal of Morphology 236:25-47. doi: 10. 1002/(SICI)1097-4687(199804)236:1<25::AID-JMOR2>3.0.CO;2-N.
-
(1998)
Journal of Morphology
, vol.236
, pp. 25-47
-
-
Didier, D.A.1
Leclair, E.E.2
Vanbuskirk, D.R.3
-
14
-
-
0037380290
-
Expression and regulation of eHAND during limb development
-
Fernandez-Teran M, Piedra ME, Rodriguez-Rey JC, Talamillo A, Ros MA. 2003. Expression and regulation of eHAND during limb development. Developmental Dynamics 226:690-701. doi: 10.1002/dvdy.10271.
-
(2003)
Developmental Dynamics
, vol.226
, pp. 690-701
-
-
Fernandez-Teran, M.1
Piedra, M.E.2
Rodriguez-Rey, J.C.3
Talamillo, A.4
Ros, M.A.5
-
15
-
-
3242891068
-
VISTA: Computational tools for comparative genomics
-
Frazer KA, Pachter L, Poliakov A, Rubin EM, Dubchak I. 2004. VISTA: computational tools for comparative genomics. Nucleic Acids Research 32:W273-W279. doi: 10.1093/nar/gkh458.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. W273-W279
-
-
Frazer, K.A.1
Pachter, L.2
Poliakov, A.3
Rubin, E.M.4
Dubchak, I.5
-
16
-
-
77952350426
-
Distinct roles of Hand2 in initiating polarity and posterior Shh expression during the onset of mouse limb bud development
-
Galli A, Robay D, Osterwalder M, Bao X, Bé nazet J-D, Tariq M, Paro R, Mackem S, Zeller R. 2010. Distinct roles of Hand2 in initiating polarity and posterior Shh expression during the onset of mouse limb bud development. PLOS Genetics 6:e1000901. doi: 10.1371/journal.pgen.1000901.
-
(2010)
PLOS Genetics
, vol.6
-
-
Galli, A.1
Robay, D.2
Osterwalder, M.3
Bao, X.4
Bénazet, J.-D.5
Tariq, M.6
Paro, R.7
Mackem, S.8
Zeller, R.9
-
18
-
-
84924926133
-
A series of normal stages in the development of the chick embryo
-
Hamburger V, Hamilton HL. 1951. A series of normal stages in the development of the chick embryo. Journal of Morphology 88:49-92. doi: 10.1002/aja.1001950404.
-
(1951)
Journal of Morphology
, vol.88
, pp. 49-92
-
-
Hamburger, V.1
Hamilton, H.L.2
-
19
-
-
0036436516
-
Exogenous retinoic acid induces a stage-specific, transient and progressive extension of Sonic hedgehog expression across the pectoral fin bud of zebrafish
-
Hoffman L, Miles J, Avaron F, Laforest L, Akimenko MA. 2002. Exogenous retinoic acid induces a stage-specific, transient and progressive extension of Sonic hedgehog expression across the pectoral fin bud of zebrafish. The International Journal of Developmental Biology 46:949-956.
-
(2002)
The International Journal of Developmental Biology
, vol.46
, pp. 949-956
-
-
Hoffman, L.1
Miles, J.2
Avaron, F.3
Laforest, L.4
Akimenko, M.A.5
-
20
-
-
33749251456
-
Visualizing plant development and gene expression in three dimensions using optical projection tomography
-
Lee K, Avondo J, Morrison H, Blot L, Stark M, Sharpe J, Bangham A, Coen E. 2006. Visualizing plant development and gene expression in three dimensions using optical projection tomography. The Plant Cell 18:2145-2156. doi: 10.1105/tpc.106.043042.
-
(2006)
The Plant Cell
, vol.18
, pp. 2145-2156
-
-
Lee, K.1
Avondo, J.2
Morrison, H.3
Blot, L.4
Stark, M.5
Sharpe, J.6
Bangham, A.7
Coen, E.8
-
21
-
-
84899634426
-
Formation of proximal and anterior limb skeleton requires early function of Irx3 and Irx5 and is negatively regulated by shh signaling
-
Li D, Sakuma R, Vakili NA, Mo R, Puviindran V, Deimling S, Zhang X, Hopyan S, Hui C. Chung. 2014. Formation of proximal and anterior limb skeleton requires early function of Irx3 and Irx5 and is negatively regulated by shh signaling. Developmental Cell 29:233-240. doi: 10.1016/j.devcel.2014.03.001.
-
(2014)
Developmental Cell
, vol.29
, pp. 233-240
-
-
Li, D.1
Sakuma, R.2
Vakili, N.A.3
Mo, R.4
Puviindran, V.5
Deimling, S.6
Zhang, X.7
Hopyan, S.8
Hui Chung., C.9
-
22
-
-
0029975823
-
Conservation in hedgehog signaling: Induction of a chicken patched homolog by Sonic hedgehog in the developing limb
-
Marigo V, Scott MP, Johnson RL, Goodrich LV, Tabin CJ. 1996. Conservation in hedgehog signaling: induction of a chicken patched homolog by Sonic hedgehog in the developing limb. Development 122:1225-1233.
-
(1996)
Development
, vol.122
, pp. 1225-1233
-
-
Marigo, V.1
Scott, M.P.2
Johnson, R.L.3
Goodrich, L.V.4
Tabin, C.J.5
-
23
-
-
84892764846
-
-
PLOS Genetics 9
-
Maurya AK, Ben J, Zhao Z, Lee RT, Niah W, Ng AS, Iyu A, Yu W, Elworthy S, van Eeden FJ, Ingham PW. 2013. Positive and negative regulation of gli activity by Kif7 in the zebrafish embryo. PLOS Genetics 9. doi: 10.1371/ journal.pgen.1003955.
-
(2013)
Positive and negative regulation of gli activity by Kif7 in the zebrafish embryo
-
-
Maurya, A.K.1
Ben, J.2
Zhao, Z.3
Lee, R.T.4
Niah, W.5
Ng, A.S.6
Iyu, A.7
Yu, W.8
Elworthy, S.9
van Eeden, F.J.10
Ingham, P.W.11
-
24
-
-
0034518158
-
VISTA: Visualizing global DNA sequence alignments of arbitrary length
-
Mayor C, BrudnoM, Schwartz JR, Poliakov A, Rubin EM, Frazer KA, Pachter LS, Dubchak I. 2000. VISTA: visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16:1046-1047. doi: 10.1093/bioinformatics/16.11.1046.
-
(2000)
Bioinformatics
, vol.16
, pp. 1046-1047
-
-
Mayor, C.1
Brudno, M.2
Schwartz, J.R.3
Poliakov, A.4
Rubin, E.M.5
Frazer, K.A.6
Pachter, L.S.7
Dubchak, I.8
-
25
-
-
26944482355
-
Pax9 and Jagged1 act downstream of Gli3 in vertebrate limb development
-
McGlinn E, Van Bueren KL, Fiorenza S, Mo R, Poh AM, Forrest A, Soares MB, Bonaldo MDF, Grimmond S, Hui CC, Wainwright B, Wicking C. 2005. Pax9 and Jagged1 act downstream of Gli3 in vertebrate limb development. Mechanisms of Development 122:1218-1233. doi: 10.1016/j.mod.2005.06.012.
-
(2005)
Mechanisms of Development
, vol.122
, pp. 1218-1233
-
-
McGlinn, E.1
Van Bueren, K.L.2
Fiorenza, S.3
Mo, R.4
Poh, A.M.5
Forrest, A.6
Soares, M.B.7
Bonaldo, M.D.F.8
Grimmond, S.9
Hui, C.C.10
Wainwright, B.11
Wicking, C.12
-
26
-
-
0033786946
-
Opposing RA and FGF signals control proximodistal vertebrate limb development through regulation of Meis genes
-
Mercader N, Leonardo E, Piedra ME, Martínez AC, Ros MA, Torres M. 2000. Opposing RA and FGF signals control proximodistal vertebrate limb development through regulation of Meis genes. Development 127:3961-3970.
-
(2000)
Development
, vol.127
, pp. 3961-3970
-
-
Mercader, N.1
Leonardo, E.2
Piedra, M.E.3
Martínez, A.C.4
Ros, M.A.5
Torres, M.6
-
27
-
-
0030587617
-
Expression of avian Pax1 and Pax9 is intrinsically regulated in the pharyngeal endoderm, but depends on environmental influences in the paraxial mesoderm
-
Muller TS, Ebensperger C, Neubuser A, Koseki H, Balling R, Christ B, Wilting J. 1996. Expression of avian Pax1 and Pax9 is intrinsically regulated in the pharyngeal endoderm, but depends on environmental influences in the paraxial mesoderm. Developmental Biology 178:403-417. doi: 10.1006/dbio.1996.0227.
-
(1996)
Developmental Biology
, vol.178
, pp. 403-417
-
-
Muller, T.S.1
Ebensperger, C.2
Neubuser, A.3
Koseki, H.4
Balling, R.5
Christ, B.6
Wilting, J.7
-
28
-
-
84940515625
-
-
NCBI Nucleotide NM_204912
-
Muller TS, Ebensperger C, Neubuser A, Koseki H, Balling R, Christ B, Wilting J. 2015. Gallus gallus paired box 9 (PAX9), mRNA. NCBI Nucleotide NM_204912. http://www.ncbi.nlm.nih.gov/nuccore/NM_204912.
-
(2015)
Gallus gallus paired box 9 (PAX9), mRNA
-
-
Muller, T.S.1
Ebensperger, C.2
Neubuser, A.3
Koseki, H.4
Balling, R.5
Christ, B.6
Wilting, J.7
-
29
-
-
56049095074
-
Exploration of human ORFeome: High-throughput preparation of ORF clones and efficient characterization of their protein products
-
Nagase T, Yamakawa H, Tadokoro S, Nakajima D, Inoue S, Yamaguchi K, Itokawa Y, Kikuno RF, Koga H, Ohara O. 2008. Exploration of human ORFeome: high-throughput preparation of ORF clones and efficient characterization of their protein products. DNA Research 15:137-149. doi: 10.1093/dnares/dsn004.
-
(2008)
DNA Research
, vol.15
, pp. 137-149
-
-
Nagase, T.1
Yamakawa, H.2
Tadokoro, S.3
Nakajima, D.4
Inoue, S.5
Yamaguchi, K.6
Itokawa, Y.7
Kikuno, R.F.8
Koga, H.9
Ohara, O.10
-
30
-
-
0025884056
-
Efficient selection for high-expression transfectants with a novel eukaryotic vector
-
Niwa H, Yamamura K, Miyazaki J. 1991. Efficient selection for high-expression transfectants with a novel eukaryotic vector. Gene 108:193-199.
-
(1991)
Gene
, vol.108
, pp. 193-199
-
-
Niwa, H.1
Yamamura, K.2
Miyazaki, J.3
-
31
-
-
84866439490
-
Evolution of a tissue-specific silencer underlies divergence in the expression of pax2 and pax8 paralogues
-
Ochi H, Tamai T, Nagano H, Kawaguchi A, Sudou N, Ogino H. 2012. Evolution of a tissue-specific silencer underlies divergence in the expression of pax2 and pax8 paralogues. Nature Communications 3:848. doi: 10.1038/ncomms1851.
-
(2012)
Nature Communications
, vol.3
, pp. 848
-
-
Ochi, H.1
Tamai, T.2
Nagano, H.3
Kawaguchi, A.4
Sudou, N.5
Ogino, H.6
-
33
-
-
0000966989
-
Evolution and morphogenetic rules: The shape of the vertebrate limb in ontogeny and phylogeny
-
Oster GF, Shubin N, Murray JD, Alberch P. 1988. Evolution and morphogenetic rules: the shape of the vertebrate limb in ontogeny and phylogeny. Evolution 42:862-884. doi: 10.2307/2408905.
-
(1988)
Evolution
, vol.42
, pp. 862-884
-
-
Oster, G.F.1
Shubin, N.2
Murray, J.D.3
Alberch, P.4
-
34
-
-
84919862317
-
HAND2 targets define a network of transcriptional regulators that compartmentalize the early limb bud mesenchyme
-
OsterwalderM, Speziale D, Shoukry M, Mohan R, Ivanek R, Kohler M, Beisel C, Wen X, Scales SJ, Christoffels VM, Visel A, Lopez-rios J, Zeller R. 2014. HAND2 targets define a network of transcriptional regulators that compartmentalize the early limb bud mesenchyme. Developmental Cell 31:345-357. doi: 10.1016/j.devcel.2014.09.018.
-
(2014)
Developmental Cell
, vol.31
, pp. 345-357
-
-
Osterwalder, M.1
Speziale, D.2
Shoukry, M.3
Mohan, R.4
Ivanek, R.5
Kohler, M.6
Beisel, C.7
Wen, X.8
Scales, S.J.9
Christoffels, V.M.10
Visel, A.11
Lopez-Rios, J.12
Zeller, R.13
-
35
-
-
34249717798
-
A novel protein-processing domain in Gli2 and Gli3 differentially blocks complete protein degradation by the proteasome
-
Pan Y, Wang B. 2007. A novel protein-processing domain in Gli2 and Gli3 differentially blocks complete protein degradation by the proteasome. The Journal of Biological Chemistry 282:10846-10852. doi: 10.1074/jbc. M608599200.
-
(2007)
The Journal of Biological Chemistry
, vol.282
, pp. 10846-10852
-
-
Pan, Y.1
Wang, B.2
-
36
-
-
23044510559
-
Genetic interaction of Gli3 and Alx4 during limb development
-
Panman L, Drenth T, Tewelscher P, Zuniga A, Zeller R. 2005. Genetic interaction of Gli3 and Alx4 during limb development. The International Journal of Developmental Biology 49:443-448. doi: 10.1387/ijdb.051984lp.
-
(2005)
The International Journal of Developmental Biology
, vol.49
, pp. 443-448
-
-
Panman, L.1
Drenth, T.2
Tewelscher, P.3
Zuniga, A.4
Zeller, R.5
-
37
-
-
84879330929
-
Revealing less derived nature of cartilaginous fish genomes with their evolutionary time scale inferred with nuclear genes
-
Renz AJ, Meyer A, Kuraku S. 2013. Revealing less derived nature of cartilaginous fish genomes with their evolutionary time scale inferred with nuclear genes. PLOS ONE 8:e66400. doi: 10.1371/journal.pone.0066400.
-
(2013)
PLOS ONE
, vol.8
-
-
Renz, A.J.1
Meyer, A.2
Kuraku, S.3
-
38
-
-
0027760995
-
Sonic hedgehog mediates the polarizing activity of the ZPA
-
Riddle RD, Johnson RL, Laufer E, Tabin C. 1993. Sonic hedgehog mediates the polarizing activity of the ZPA. Cell 75:1401-1416. doi: 10.1016/0092-8674(93)90626-2.
-
(1993)
Cell
, vol.75
, pp. 1401-1416
-
-
Riddle, R.D.1
Johnson, R.L.2
Laufer, E.3
Tabin, C.4
-
39
-
-
26444577884
-
A previously unidentified amino-terminal domain regulates transcriptional activity of wild-type and disease-associated human GLI2
-
Roessler E, Ermilov AN, Grange DK, Wang A, Grachtchouk M, Dlugosz AA, Muenke M. 2005. A previously unidentified amino-terminal domain regulates transcriptional activity of wild-type and disease-associated human GLI2. Human Molecular Genetics 14:2181-2188. doi: 10.1093/hmg/ddi222.
-
(2005)
Human Molecular Genetics
, vol.14
, pp. 2181-2188
-
-
Roessler, E.1
Ermilov, A.N.2
Grange, D.K.3
Wang, A.4
Grachtchouk, M.5
Dlugosz, A.A.6
Muenke, M.7
-
40
-
-
65249125740
-
Heterochronic shift in Hoxmediated activation of Sonic hedgehog leads to morphological changes during fin development
-
Sakamoto K, Onimaru K, Munakata K, Suda N, Tamura M, Ochi H, Tanaka M. 2009a. Heterochronic shift in Hoxmediated activation of Sonic hedgehog leads to morphological changes during fin development. PLOS ONE 4: e5121. doi: 10.1371/journal.pone.0005121.
-
(2009)
PLOS ONE
, vol.4
-
-
Sakamoto, K.1
Onimaru, K.2
Munakata, K.3
Suda, N.4
Tamura, M.5
Ochi, H.6
Tanaka, M.7
-
41
-
-
84940539913
-
-
NCBI Nucleotide EU005550
-
Sakamoto K, Onimaru K, Munakata K, Suda N, Tamura M, Ochi H, Tanaka M. 2009b. Scyliorhinus canicula HoxA13 mRNA, partial cds. NCBI Nucleotide EU005550. http://www.ncbi.nlm.nih.gov/nuccore/EU005550.
-
(2009)
Scyliorhinus canicula HoxA13 mRNA, partial cds
-
-
Sakamoto, K.1
Onimaru, K.2
Munakata, K.3
Suda, N.4
Tamura, M.5
Ochi, H.6
Tanaka, M.7
-
42
-
-
0034333473
-
Similar expression and regulation of Gli2 and Gli3 in the chick limb bud
-
Schweitzer R, Vogan KJ, Tabin CJ. 2000. Similar expression and regulation of Gli2 and Gli3 in the chick limb bud. Mechanisms of Development 98:171-174. doi: 10.1016/S0925-4773(00)00458-5.
-
(2000)
Mechanisms of Development
, vol.98
, pp. 171-174
-
-
Schweitzer, R.1
Vogan, K.J.2
Tabin, C.J.3
-
43
-
-
0037134008
-
Optical projection tomography as a tool for 3D microscopy and gene expression studies
-
Sharpe J, Ahlgren U, Perry P, Hill B, Ross A, Hecksher-Sørensen J, Baldock R, Davidson D. 2002. Optical projection tomography as a tool for 3D microscopy and gene expression studies. Science 296:541-545. doi: 10.1126/ science.1068206.
-
(2002)
Science
, vol.296
, pp. 541-545
-
-
Sharpe, J.1
Ahlgren, U.2
Perry, P.3
Hill, B.4
Ross, A.5
Hecksher-Sørensen, J.6
Baldock, R.7
Davidson, D.8
-
44
-
-
0000427057
-
A morphogenetic approach to the origin and basic organization of the tetrapod limb
-
Shubin NH, Alberch P. 1986. A morphogenetic approach to the origin and basic organization of the tetrapod limb. Evolutionary Biology 20:318-390.
-
(1986)
Evolutionary Biology
, vol.20
, pp. 318-390
-
-
Shubin, N.H.1
Alberch, P.2
-
45
-
-
50049084142
-
Congenic method in the chick limb buds by electroporation
-
Suzuki T, Ogura T. 2008. Congenic method in the chick limb buds by electroporation. Development, Growth & Differentiation 50:459-465. doi: 10.1111/j.1440-169X.2008.01054.x.
-
(2008)
Development, Growth & Differentiation
, vol.50
, pp. 459-465
-
-
Suzuki, T.1
Ogura, T.2
-
46
-
-
84857237165
-
Hepatic and extrahepatic distribution of ornithine urea cycle enzymes in holocephalan elephant fish (Callorhinchus milii)
-
Takagi W, Kajimura M, Bell JD, Toop T, Donald JA, Hyodo S. 2012. Hepatic and extrahepatic distribution of ornithine urea cycle enzymes in holocephalan elephant fish (Callorhinchus milii). Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology 161:331-340. doi: 10.1016/j.cbpb.2011.12.006.
-
(2012)
Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology
, vol.161
, pp. 331-340
-
-
Takagi, W.1
Kajimura, M.2
Bell, J.D.3
Toop, T.4
Donald, J.A.5
Hyodo, S.6
-
47
-
-
0031672928
-
The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development
-
Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T, Belmonte JC. 1998. The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development. Development 125:4417-4425.
-
(1998)
Development
, vol.125
, pp. 4417-4425
-
-
Takahashi, M.1
Tamura, K.2
Buscher, D.3
Masuya, H.4
Yonei-Tamura, S.5
Matsumoto, K.6
Naitoh-Matsuo, M.7
Takeuchi, J.8
Ogura, K.9
Shiroishi, T.10
Ogura, T.11
Belmonte, J.C.12
-
48
-
-
84940545061
-
-
NCBI Nucleotide NM_204162
-
Takahashi M, Tamura K, Buscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T, Izpisua Belmonte JC. 2013. Gallus gallus ALX homeobox 4 (ALX4), mRNA. NCBI Nucleotide NM_204162. http://www.ncbi.nlm.nih.gov/nuccore/NM_204162.
-
(2013)
Gallus gallus ALX homeobox 4 (ALX4), mRNA
-
-
Takahashi, M.1
Tamura, K.2
Buscher, D.3
Masuya, H.4
Yonei-Tamura, S.5
Matsumoto, K.6
Naitoh-Matsuo, M.7
Takeuchi, J.8
Ogura, K.9
Shiroishi, T.10
Ogura, T.11
Izpisua Belmonte, J.C.12
-
49
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28:1530-1534. doi: 10.1093/molbev/msr121.
-
(2011)
Molecular Biology and Evolution
, vol.28
, pp. 1530-1534
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
50
-
-
0031571620
-
Retinoic acid changes the proximodistal developmental competence and affinity of distal cells in the developing chick limb bud
-
Tamura K, Yokouchi Y, Kuroiwa A, Ide H. 1997. Retinoic acid changes the proximodistal developmental competence and affinity of distal cells in the developing chick limb bud. Developmental Biology 188:224-234. doi: 10.1006/dbio.1997.8627.
-
(1997)
Developmental Biology
, vol.188
, pp. 224-234
-
-
Tamura, K.1
Yokouchi, Y.2
Kuroiwa, A.3
Ide, H.4
-
51
-
-
0037041417
-
Fin development in a cartilaginous fish and the origin of vertebrate limbs
-
Tanaka M, Münsterberg A, Anderson WG, Prescott AR, Hazon N, Tickle C. 2002a. Fin development in a cartilaginous fish and the origin of vertebrate limbs. Nature 416:527-531. doi: 10.1038/416527a.
-
(2002)
Nature
, vol.416
, pp. 527-531
-
-
Tanaka, M.1
Münsterberg, A.2
Anderson, W.G.3
Prescott, A.R.4
Hazon, N.5
Tickle, C.6
-
52
-
-
84940552346
-
-
NCBI Nucleotide AY057890
-
Tanaka M, Munsterberg A, Anderson WG, Prescott AR, Hazon N, Tickle C. 2002b. Scyliorhinus canicula dHand protein mRNA, partial cds. NCBI Nucleotide AY057890. http://www.ncbi.nlm.nih.gov/nuccore/ AY057890.
-
(2002)
Scyliorhinus canicula dHand protein mRNA, partial cds
-
-
Tanaka, M.1
Munsterberg, A.2
Anderson, W.G.3
Prescott, A.R.4
Hazon, N.5
Tickle, C.6
-
53
-
-
0037083760
-
Mutual genetic antagonism involving GLI3 and dHAND prepatterns the vertebrate limb bud mesenchyme prior to SHH signaling
-
Te Welscher P, Fernandez-Teran M, Ros MA, Zeller R. 2002. Mutual genetic antagonism involving GLI3 and dHAND prepatterns the vertebrate limb bud mesenchyme prior to SHH signaling. Genes & Development 16: 421-426. doi: 10.1101/gad.219202.
-
(2002)
Genes & Development
, vol.16
, pp. 421-426
-
-
Te Welscher, P.1
Fernandez-Teran, M.2
Ros, M.A.3
Zeller, R.4
-
54
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876-4882. doi: 10.1093/nar/25.24.4876.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
55
-
-
34247342594
-
Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome
-
Venkatesh B, Kirkness EF, Loh Y-H, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S. 2007. Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome. PLOS Biology 5:e101. doi: 10.1371/journal.pbio.0050101.
-
(2007)
PLOS Biology
, vol.5
-
-
Venkatesh, B.1
Kirkness, E.F.2
Loh, Y.-H.3
Halpern, A.L.4
Lee, A.P.5
Johnson, J.6
Dandona, N.7
Viswanathan, L.D.8
Tay, A.9
Venter, J.C.10
Strausberg, R.L.11
Brenner, S.12
-
56
-
-
84892160187
-
Elephant shark genome provides unique insights into gnathostome evolution
-
Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, Kondrychyn I, Lim ZW, Tay B-H, Tohari S, Kong KW, Ho S, Lorente-Galdos B, Quilez J, Marques-Bonet T, Raney BJ, Ingham PW, Tay A, Hillier LW, Minx P, Boehm T, Wilson RK, Brenner S, Warren WC. 2014. Elephant shark genome provides unique insights into gnathostome evolution. Nature 505: 174-179. doi: 10.1038/nature12826.
-
(2014)
Nature
, vol.505
, pp. 174-179
-
-
Venkatesh, B.1
Lee, A.P.2
Ravi, V.3
Maurya, A.K.4
Lian, M.M.5
Swann, J.B.6
Ohta, Y.7
Flajnik, M.F.8
Sutoh, Y.9
Kasahara, M.10
Hoon, S.11
Gangu, V.12
Roy, S.W.13
Irimia, M.14
Korzh, V.15
Kondrychyn, I.16
Lim, Z.W.17
Tay, B.-H.18
Tohari, S.19
Kong, K.W.20
Ho, S.21
Lorente-Galdos, B.22
Quilez, J.23
Marques-Bonet, T.24
Raney, B.J.25
Ingham, P.W.26
Tay, A.27
Hillier, L.W.28
Minx, P.29
Boehm, T.30
Wilson, R.K.31
Brenner, S.32
Warren, W.C.33
more..
-
58
-
-
53549125545
-
A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb
-
Vokes SA, Ji H, Wong WH, McMahon AP. 2008. A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb. Genes & Development 22:2651-2663. doi: 10. 1101/gad.1693008.
-
(2008)
Genes & Development
, vol.22
, pp. 2651-2663
-
-
Vokes, S.A.1
Ji, H.2
Wong, W.H.3
McMahon, A.P.4
-
59
-
-
36348979142
-
Fins into limbs: Evolution, development, and transformation
-
Hall BK, editor. The University of Chicago Press
-
Wagner GP, Larsson HCE. 2007. Fins into limbs: evolution, development, and transformation. In: Hall BK, editor. Fins and limbs in the study of evolutionary novelties: The University of Chicago Press. p. 49-61.
-
(2007)
Fins and limbs in the study of evolutionary novelties
, pp. 49-61
-
-
Wagner, G.P.1
Larsson, H.C.E.2
-
60
-
-
0034681266
-
Hedgehog-regulated processing of Gli3 produces an anterior/posterior repressor gradient in the developing vertebrate limb
-
Wang B, Fallon J, Beachy P. 2000. Hedgehog-regulated processing of Gli3 produces an anterior/posterior repressor gradient in the developing vertebrate limb. Cell 100:423-434. doi: 10.1016/S0092-8674(00)80678-9.
-
(2000)
Cell
, vol.100
, pp. 423-434
-
-
Wang, B.1
Fallon, J.2
Beachy, P.3
-
61
-
-
84862240827
-
-
Database 2012, bar064
-
Wang Q, Arighi CN, King BL, Polson SW, Vincent J, Chen C, Huang H, Kingham BF, Page ST, Farnum Rendino M, Thomas WK, Udwary DW, Wu CH. 2012. Community annotation and bioinformatics workforce development in concert-Little Skate Genome Annotation Workshops and Jamborees. Database 2012, bar064.
-
(2012)
Community annotation and bioinformatics workforce development in concert-Little Skate Genome Annotation Workshops and Jamborees
-
-
Wang, Q.1
Arighi, C.N.2
King, B.L.3
Polson, S.W.4
Vincent, J.5
Chen, C.6
Huang, H.7
Kingham, B.F.8
Page, S.T.9
Farnum Rendino, M.10
Thomas, W.K.11
Udwary, D.W.12
Wu, C.H.13
-
62
-
-
0031718841
-
A modified overlap extension PCR method to create chimeric genes in the absence of restriction enzymes
-
Wurch T, Lestienne F, Pauwels PJ. 1998. A modified overlap extension PCR method to create chimeric genes in the absence of restriction enzymes. Biotechnology Techniques 12:653-657. doi: 10.1023/A:1008848517221.
-
(1998)
Biotechnology Techniques
, vol.12
, pp. 653-657
-
-
Wurch, T.1
Lestienne, F.2
Pauwels, P.J.3
-
63
-
-
1642287727
-
Regulation of retinoic acid distribution is required for proximodistal patterning and outgrowth of the developing mouse limb
-
Yashiro K, Zhao X, Uehara M, Yamashita K, Nishijima M, Nishino J, Saijoh Y, Sakai Y, Hamada H. 2004. Regulation of retinoic acid distribution is required for proximodistal patterning and outgrowth of the developing mouse limb. Developmental Cell 6:411-422. doi: 10.1016/S1534-5807(04)00062-0.
-
(2004)
Developmental Cell
, vol.6
, pp. 411-422
-
-
Yashiro, K.1
Zhao, X.2
Uehara, M.3
Yamashita, K.4
Nishijima, M.5
Nishino, J.6
Saijoh, Y.7
Sakai, Y.8
Hamada, H.9
-
64
-
-
71649095998
-
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58
-
Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S, Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N, Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y, Okado H, Hashimoto M, Asahara H. 2009. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Developmental Cell 17:836-848. doi: 10.1016/j.devcel.2009.10.011.
-
(2009)
Developmental Cell
, vol.17
, pp. 836-848
-
-
Yokoyama, S.1
Ito, Y.2
Ueno-Kudoh, H.3
Shimizu, H.4
Uchibe, K.5
Albini, S.6
Mitsuoka, K.7
Miyaki, S.8
Kiso, M.9
Nagai, A.10
Hikata, T.11
Osada, T.12
Fukuda, N.13
Yamashita, S.14
Harada, D.15
Mezzano, V.16
Kasai, M.17
Puri, P.L.18
Hayashizaki, Y.19
Okado, H.20
Hashimoto, M.21
Asahara, H.22
more..
-
65
-
-
55049087326
-
Competent stripes for diverse positions of limbs/fins in gnathostome embryos
-
Yonei-Tamura S, Abe G, Tanaka Y, Anno H, Noro M, Ide H, Aono H, Kuraishi R, Osumi N, Kuratani S, Tamura K. 2008. Competent stripes for diverse positions of limbs/fins in gnathostome embryos. Evolution & Development 10:737-745. doi: 10.1111/j.1525-142X.2008.00288.x.
-
(2008)
Evolution & Development
, vol.10
, pp. 737-745
-
-
Yonei-Tamura, S.1
Abe, G.2
Tanaka, Y.3
Anno, H.4
Noro, M.5
Ide, H.6
Aono, H.7
Kuraishi, R.8
Osumi, N.9
Kuratani, S.10
Tamura, K.11
-
67
-
-
77954540386
-
Loss of fish actinotrichia proteins and the fin-to-limb transition
-
Zhang J, Wagh P, Guay D, Sanchez-Pulido L, Padhi BK, Korzh V, Andrade-Navarro MA, Akimenko M-A. 2010. Loss of fish actinotrichia proteins and the fin-to-limb transition. Nature 466:234-237. doi: 10.1038/nature09137.
-
(2010)
Nature
, vol.466
, pp. 234-237
-
-
Zhang, J.1
Wagh, P.2
Guay, D.3
Sanchez-Pulido, L.4
Padhi, B.K.5
Korzh, V.6
Andrade-Navarro, M.A.7
Akimenko, M.-A.8
|