메뉴 건너뛰기




Volumn 212, Issue , 2015, Pages 67-75

Monitoring of the microbiota of fermented sausages by culture independent rRNA-based approaches

Author keywords

Fermented meat; Molecular methods; Pyrosequencing; RT PCR DGGE

Indexed keywords

RNA 16S;

EID: 84940451113     PISSN: 01681605     EISSN: 18793460     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2015.01.016     Document Type: Article
Times cited : (100)

References (34)
  • 2
    • 84957985346 scopus 로고    scopus 로고
    • Microbiology of food and animal feeding stuffs-Horizontal method for the detection and enumeration of Listeria monocytogenes-Part 1.
    • International Organization for Standardization, Geneva, Switzerland
    • Anonymous Microbiology of food and animal feeding stuffs-Horizontal method for the detection and enumeration of Listeria monocytogenes-Part 1. Detection method (ISO 11290-1:1996) 1996, International Organization for Standardization, Geneva, Switzerland.
    • (1996) Detection method (ISO 11290-1:1996)
  • 5
    • 3242884053 scopus 로고    scopus 로고
    • Diversity and dynamics of communities of coagulase-negative staphylococci in traditional fermented sausages
    • Blaiotta G., Pennacchia C., Villani F., Ricciardi A., Tofalo R., Parente E. Diversity and dynamics of communities of coagulase-negative staphylococci in traditional fermented sausages. J. Appl. Microbiol. 2004, 97:271-284.
    • (2004) J. Appl. Microbiol. , vol.97 , pp. 271-284
    • Blaiotta, G.1    Pennacchia, C.2    Villani, F.3    Ricciardi, A.4    Tofalo, R.5    Parente, E.6
  • 7
    • 84897471513 scopus 로고    scopus 로고
    • Activities of strains of Brochothrix thermosphacta in vitro and in meat
    • Casaburi A., De Filippis F., Villani F., Ercolini D. Activities of strains of Brochothrix thermosphacta in vitro and in meat. Food Res. Int. 2014, 62:366-374.
    • (2014) Food Res. Int. , vol.62 , pp. 366-374
    • Casaburi, A.1    De Filippis, F.2    Villani, F.3    Ercolini, D.4
  • 9
    • 60249087513 scopus 로고    scopus 로고
    • Lactic acid bacteria ecology of three traditional fermented sausages produced in the North of Italy as determined by molecular methods
    • Cocolin L., Dolci P., Rantsiou K., Urso R., Cantoni C., Comi G. Lactic acid bacteria ecology of three traditional fermented sausages produced in the North of Italy as determined by molecular methods. Meat Sci. 2009, 82:125-132.
    • (2009) Meat Sci. , vol.82 , pp. 125-132
    • Cocolin, L.1    Dolci, P.2    Rantsiou, K.3    Urso, R.4    Cantoni, C.5    Comi, G.6
  • 10
    • 84885186507 scopus 로고    scopus 로고
    • Culture independent methods to assess the diversity and dynamics of microbiota during food fermentation
    • Cocolin L., Alessandria V., Dolci P., Gorra R., Rantsiou K. Culture independent methods to assess the diversity and dynamics of microbiota during food fermentation. Int. J. Food Microbiol. 2013, 167:29-43.
    • (2013) Int. J. Food Microbiol. , vol.167 , pp. 29-43
    • Cocolin, L.1    Alessandria, V.2    Dolci, P.3    Gorra, R.4    Rantsiou, K.5
  • 12
    • 84880809968 scopus 로고    scopus 로고
    • Exploring the sources of bacterial spoilers in beefsteaks by culture-independent high-throughput sequencing
    • De Filippis F., La Storia A., Villani F., Ercolini D. Exploring the sources of bacterial spoilers in beefsteaks by culture-independent high-throughput sequencing. PLoS ONE 2013, 8:e70222.
    • (2013) PLoS ONE , vol.8 , pp. e70222
    • De Filippis, F.1    La Storia, A.2    Villani, F.3    Ercolini, D.4
  • 14
    • 84877133975 scopus 로고    scopus 로고
    • High-throughput sequencing and metagenomics: moving forward in the culture-independent analysis of food microbial ecology
    • Ercolini D. High-throughput sequencing and metagenomics: moving forward in the culture-independent analysis of food microbial ecology. Appl. Environ. Microbiol. 2013, 79:3148-3155.
    • (2013) Appl. Environ. Microbiol. , vol.79 , pp. 3148-3155
    • Ercolini, D.1
  • 17
    • 84868610117 scopus 로고    scopus 로고
    • "Remake" by high-throughput sequencing of the microbiota involved in the production of water buffalo mozzarella cheese
    • Ercolini D., De Filippis F., La Storia A., Iacono M. "Remake" by high-throughput sequencing of the microbiota involved in the production of water buffalo mozzarella cheese. Appl. Environ. Microbiol. 2012, 78:8142-8145.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 8142-8145
    • Ercolini, D.1    De Filippis, F.2    La Storia, A.3    Iacono, M.4
  • 18
    • 34248207624 scopus 로고    scopus 로고
    • Characterisation of the bacterial flora of modified atmosphere packaged farmed Atlantic cod (Gadus morhua) by PCR-DGGE of conserved 16S rRNA gene regions
    • Hovda M.B., Lunestad B.T., Sivertsvik M., Rosnes J.T. Characterisation of the bacterial flora of modified atmosphere packaged farmed Atlantic cod (Gadus morhua) by PCR-DGGE of conserved 16S rRNA gene regions. Int. J. Food Microbiol. 2007, 117:68-75.
    • (2007) Int. J. Food Microbiol. , vol.117 , pp. 68-75
    • Hovda, M.B.1    Lunestad, B.T.2    Sivertsvik, M.3    Rosnes, J.T.4
  • 19
    • 33746227618 scopus 로고    scopus 로고
    • Molecular and technological characterization of Staphylococcus xylosus isolated from naturally fermented Italian sausages by RAPD, Rep-PCR and Sau-PCR analysis
    • Iacumin L., Comi G., Cantoni C., Cocolin L. Molecular and technological characterization of Staphylococcus xylosus isolated from naturally fermented Italian sausages by RAPD, Rep-PCR and Sau-PCR analysis. Meat Sci. 2006, 74:281-288.
    • (2006) Meat Sci. , vol.74 , pp. 281-288
    • Iacumin, L.1    Comi, G.2    Cantoni, C.3    Cocolin, L.4
  • 20
    • 84888413019 scopus 로고    scopus 로고
    • The use of nucleosides and arginine as alternative energy sources by coagulase-negative staphylococci in view of meat fermentation
    • Janssens M., Van der Mijnsbrugge A., Sánchez Mainar M., Balzarini T., De Vuyst L., Leroy F. The use of nucleosides and arginine as alternative energy sources by coagulase-negative staphylococci in view of meat fermentation. Food Microbiol. 2014, 39:53-60.
    • (2014) Food Microbiol. , vol.39 , pp. 53-60
    • Janssens, M.1    Van der Mijnsbrugge, A.2    Sánchez Mainar, M.3    Balzarini, T.4    De Vuyst, L.5    Leroy, F.6
  • 21
    • 0025990859 scopus 로고
    • Identification of mesophilic lactic acid bacteria by using polymerase chain reaction- amplified variable regions of 16S rRNA and specific DNA probes
    • Klijn N., Weerkamp A.H., de Vos W.M. Identification of mesophilic lactic acid bacteria by using polymerase chain reaction- amplified variable regions of 16S rRNA and specific DNA probes. Appl. Environ. Microbiol. 1991, 57:3390-3393.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 3390-3393
    • Klijn, N.1    Weerkamp, A.H.2    de Vos, W.M.3
  • 22
    • 75149177192 scopus 로고    scopus 로고
    • Biodiversity of indigenous staphylococci of naturally fermented dry sausages and manufacturing environments of small-scale processing units
    • Leroy S., Giammarinaro P., Chacornac J.-P., Lebert I., Talon R. Biodiversity of indigenous staphylococci of naturally fermented dry sausages and manufacturing environments of small-scale processing units. Food Microbiol. 2010, 27:294-301.
    • (2010) Food Microbiol. , vol.27 , pp. 294-301
    • Leroy, S.1    Giammarinaro, P.2    Chacornac, J.-P.3    Lebert, I.4    Talon, R.5
  • 23
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C., Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 2005, 71:8228-8235.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 24
    • 84855469896 scopus 로고    scopus 로고
    • The fate of indigenous microbiota, starter cultures, Escherichia coli, Listeria innocua and Staphylococcus aureus in Danish raw milk and cheeses determined by pyrosequencing and quantitative real time (qRT)-PCR
    • Masoud W., Vogensen F.K., Lillevang S., Abu Al-Soud W., Sørensen S.J., Jakobsen M. The fate of indigenous microbiota, starter cultures, Escherichia coli, Listeria innocua and Staphylococcus aureus in Danish raw milk and cheeses determined by pyrosequencing and quantitative real time (qRT)-PCR. Int. J. Food Microbiol. 2012, 153:192-202.
    • (2012) Int. J. Food Microbiol. , vol.153 , pp. 192-202
    • Masoud, W.1    Vogensen, F.K.2    Lillevang, S.3    Abu Al-Soud, W.4    Sørensen, S.J.5    Jakobsen, M.6
  • 25
    • 0942278721 scopus 로고    scopus 로고
    • Isolation and technological properties of coagulase negative staphylococci from fermented sausages of Southern Italy
    • Mauriello G., Casaburi A., Blaiotta G., Villani F. Isolation and technological properties of coagulase negative staphylococci from fermented sausages of Southern Italy. Meat Sci. 2004, 67:149-158.
    • (2004) Meat Sci. , vol.67 , pp. 149-158
    • Mauriello, G.1    Casaburi, A.2    Blaiotta, G.3    Villani, F.4
  • 27
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturig gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G., De Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturig gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 1993, 59:695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 28
    • 84907173921 scopus 로고    scopus 로고
    • Bacterial diversity in typical Italian salami at different ripening stages as revealed by high-throughput sequencing of 16S rRNA amplicons
    • Połka J., Rebecchi A., Pisacane V., Morelli L., Puglisi E. Bacterial diversity in typical Italian salami at different ripening stages as revealed by high-throughput sequencing of 16S rRNA amplicons. Food Microbiol. 2015, 46:342-356.
    • (2015) Food Microbiol. , vol.46 , pp. 342-356
    • Połka, J.1    Rebecchi, A.2    Pisacane, V.3    Morelli, L.4    Puglisi, E.5
  • 29
    • 33645876449 scopus 로고    scopus 로고
    • New developments in the study of the microbiota of naturally fermented sausages as determined by molecular methods: a review
    • Rantsiou K., Cocolin L. New developments in the study of the microbiota of naturally fermented sausages as determined by molecular methods: a review. Int. J. Food Microbiol. 2006, 108:255-267.
    • (2006) Int. J. Food Microbiol. , vol.108 , pp. 255-267
    • Rantsiou, K.1    Cocolin, L.2
  • 31
    • 77956304094 scopus 로고    scopus 로고
    • Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
    • Reeder J., Knight R. Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nat. Methods 2010, 7:668-669.
    • (2010) Nat. Methods , vol.7 , pp. 668-669
    • Reeder, J.1    Knight, R.2
  • 32
    • 34250761514 scopus 로고    scopus 로고
    • Microbial ecosystems of traditional fermented meat products: the importance of indigenous starters
    • Talon R., Leroy S., Lebert I. Microbial ecosystems of traditional fermented meat products: the importance of indigenous starters. Meat Sci. 2007, 77:55-62.
    • (2007) Meat Sci. , vol.77 , pp. 55-62
    • Talon, R.1    Leroy, S.2    Lebert, I.3
  • 33
    • 0002032381 scopus 로고
    • Computer-aided objective comparison of electrophoretic patterns for grouping and identification of microorganisms
    • Vauterin L., Vauterin P. Computer-aided objective comparison of electrophoretic patterns for grouping and identification of microorganisms. Eur. J. Clin. Microbiol. 1992, 1:37-41.
    • (1992) Eur. J. Clin. Microbiol. , vol.1 , pp. 37-41
    • Vauterin, L.1    Vauterin, P.2
  • 34
    • 34548489389 scopus 로고    scopus 로고
    • Study of the microbial ecology of the "Soppressata of Vallo di Diano", a traditional dry fermented sausage from Southern Italy, and in vitro and in situ selection of autochthonous starter cultures
    • Villani F., Casaburi A., Pennacchia C., Filosa L., Russo F., Ercolini D. Study of the microbial ecology of the "Soppressata of Vallo di Diano", a traditional dry fermented sausage from Southern Italy, and in vitro and in situ selection of autochthonous starter cultures. Appl. Environ. Microbiol. 2007, 73:5453-5463.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5453-5463
    • Villani, F.1    Casaburi, A.2    Pennacchia, C.3    Filosa, L.4    Russo, F.5    Ercolini, D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.