-
1
-
-
84869122814
-
Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism
-
Archer, J., Weber, J., Henry, K., Winner, D., Gibson, R., Lee, L. et al. (2012) Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism. PLoS ONE, 7, e49602.
-
(2012)
PLoS ONE
, vol.7
, pp. e49602
-
-
Archer, J.1
Weber, J.2
Henry, K.3
Winner, D.4
Gibson, R.5
Lee, L.6
-
2
-
-
70350043898
-
High-resolution, high-throughput HLA genotyping by next-generation sequencing
-
Bentley, G., Higuchi, R., Hoglund, B., Goodridge, D., Sayer, D., Trachtenberg, E.A. & Erlich, H.A. (2009) High-resolution, high-throughput HLA genotyping by next-generation sequencing. Tissue Antigens, 74, 393.
-
(2009)
Tissue Antigens
, vol.74
, pp. 393
-
-
Bentley, G.1
Higuchi, R.2
Hoglund, B.3
Goodridge, D.4
Sayer, D.5
Trachtenberg, E.A.6
Erlich, H.A.7
-
3
-
-
84887615450
-
A short-read multiplex sequencing method for reliable, cost-effective and high-throughput genotyping in large-scale studies
-
Cao, H., Wang, Y., Zhang, W., Chai, X., Zhang, X., Chen, S. et al. (2013) A short-read multiplex sequencing method for reliable, cost-effective and high-throughput genotyping in large-scale studies. Human Mutation, 34, 1715.
-
(2013)
Human Mutation
, vol.34
, pp. 1715
-
-
Cao, H.1
Wang, Y.2
Zhang, W.3
Chai, X.4
Zhang, X.5
Chen, S.6
-
4
-
-
84875689644
-
Rapid, scalable and highly automated HLA genotyping using next-generation sequencing: a transition from research to diagnostics
-
Danzer, M., Niklas, N., Stabentheiner, S., Hofer, K., Pröll, J., Stückler, C., Raml, E., Polin, H. & Gabriel, C. (2013) Rapid, scalable and highly automated HLA genotyping using next-generation sequencing: a transition from research to diagnostics. BMC Genomics, 14, 221.
-
(2013)
BMC Genomics
, vol.14
, pp. 221
-
-
Danzer, M.1
Niklas, N.2
Stabentheiner, S.3
Hofer, K.4
Pröll, J.5
Stückler, C.6
Raml, E.7
Polin, H.8
Gabriel, C.9
-
5
-
-
84872250896
-
16(th) IHIW: review of HLA typing by NGS
-
De Santis, D., Dinauer, D., Duke, J., Erlich, H.A., Holcomb, C.L., Lind, C. et al. (2013) 16(th) IHIW: review of HLA typing by NGS. International Journal of Immunogenetics, 40, 72.
-
(2013)
International Journal of Immunogenetics
, vol.40
, pp. 72
-
-
De Santis, D.1
Dinauer, D.2
Duke, J.3
Erlich, H.A.4
Holcomb, C.L.5
Lind, C.6
-
6
-
-
78651451727
-
Next-generation sequencing for HLA typing of class I loci
-
Erlich, R.L., Jia, X., Anderson, S., Banks, E., Gao, X., Carrington, M. et al. (2011) Next-generation sequencing for HLA typing of class I loci. BMC Genomics, 12, 42.
-
(2011)
BMC Genomics
, vol.12
, pp. 42
-
-
Erlich, R.L.1
Jia, X.2
Anderson, S.3
Banks, E.4
Gao, X.5
Carrington, M.6
-
7
-
-
84892976830
-
HLA typing by next-generation sequencing - getting closer to reality
-
Gabriel, C., Fürst, D., Faé, I., Wenda, S., Zollikofer, C., Mytilineos, J. & Fischer, G.F. (2014) HLA typing by next-generation sequencing - getting closer to reality. Tissue Antigens, 83, 65.
-
(2014)
Tissue Antigens
, vol.83
, pp. 65
-
-
Gabriel, C.1
Fürst, D.2
Faé, I.3
Wenda, S.4
Zollikofer, C.5
Mytilineos, J.6
Fischer, G.F.7
-
8
-
-
79551676183
-
A multi-site study using high-resolution HLA genotyping by next generation sequencing
-
Holcomb, C.L., Höglund, B., Anderson, M.W., Blake, L.A., Böhme, I., Egholm, M. et al. (2011) A multi-site study using high-resolution HLA genotyping by next generation sequencing. Tissue Antigens, 77, 206.
-
(2011)
Tissue Antigens
, vol.77
, pp. 206
-
-
Holcomb, C.L.1
Höglund, B.2
Anderson, M.W.3
Blake, L.A.4
Böhme, I.5
Egholm, M.6
-
9
-
-
38349100266
-
Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project
-
Horton, R., Gibson, R., Coggill, P., Miretti, M., Allcock, R.J., Almeida, J. et al. (2008) Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project. Immunogenetics, 60, 1.
-
(2008)
Immunogenetics
, vol.60
, pp. 1
-
-
Horton, R.1
Gibson, R.2
Coggill, P.3
Miretti, M.4
Allcock, R.J.5
Almeida, J.6
-
10
-
-
84878251175
-
Phase-defined complete sequencing of the HLA genes by next-generation sequencing
-
Hosomichi, K., Jinam, T.A., Mitsunaga, S., Nakaoka, H. & Inoue, I. (2013) Phase-defined complete sequencing of the HLA genes by next-generation sequencing. BMC Genomics, 14, 355.
-
(2013)
BMC Genomics
, vol.14
, pp. 355
-
-
Hosomichi, K.1
Jinam, T.A.2
Mitsunaga, S.3
Nakaoka, H.4
Inoue, I.5
-
12
-
-
84866414827
-
New reservoirs of HLA alleles: pools of rare variants enhance immune defense
-
Klitz, W., Hedrick, P. & Louis, E.J. (2012) New reservoirs of HLA alleles: pools of rare variants enhance immune defense. Trends in Genetics, 28, 480.
-
(2012)
Trends in Genetics
, vol.28
, pp. 480
-
-
Klitz, W.1
Hedrick, P.2
Louis, E.J.3
-
13
-
-
84892693336
-
Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing
-
Lange, V., Böhme, I., Hofmann, J., Lang, K., Sauter, J., Schöne, B. et al. (2014) Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing. BMC Genomics, 15, 63.
-
(2014)
BMC Genomics
, vol.15
, pp. 63
-
-
Lange, V.1
Böhme, I.2
Hofmann, J.3
Lang, K.4
Sauter, J.5
Schöne, B.6
-
14
-
-
84864497082
-
Ultra-high resolution HLA genotyping and allele discovery by highly multiplexed cDNA amplicon pyrosequencing
-
Lank, S.M., Golbach, B.A., Creager, H.M., Wiseman, R.W., Keskin, D.B., Reinherz, E.L., Brusic, V. & O'Connor, D.H. (2012) Ultra-high resolution HLA genotyping and allele discovery by highly multiplexed cDNA amplicon pyrosequencing. BMC Genomics, 13, 378.
-
(2012)
BMC Genomics
, vol.13
, pp. 378
-
-
Lank, S.M.1
Golbach, B.A.2
Creager, H.M.3
Wiseman, R.W.4
Keskin, D.B.5
Reinherz, E.L.6
Brusic, V.7
O'Connor, D.H.8
-
15
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754
-
-
Li, H.1
Durbin, R.2
-
16
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics, 26, 589.
-
(2010)
Bioinformatics
, vol.26
, pp. 589
-
-
Li, H.1
Durbin, R.2
-
17
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R. & Genome Project Data Processing Subgroup (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
18
-
-
77956618378
-
Next-generation sequencing: the solution for high-resolution, unambiguous human leukocyte antigen typing
-
Lind, C., Ferriola, D., Mackiewicz, K., Heron, S., Rogers, M., Slavich, L. et al. (2010) Next-generation sequencing: the solution for high-resolution, unambiguous human leukocyte antigen typing. Human Immunology, 71, 1033.
-
(2010)
Human Immunology
, vol.71
, pp. 1033
-
-
Lind, C.1
Ferriola, D.2
Mackiewicz, K.3
Heron, S.4
Rogers, M.5
Slavich, L.6
-
19
-
-
84860756398
-
Performance comparison of benchtop high-throughput sequencing platforms
-
Loman, N.J., Misra, R.V., Dallman, T.J., Constantinidou, C., Gharbia, S.E., Wain, J. & Pallen, M.J. (2012a) Performance comparison of benchtop high-throughput sequencing platforms. Nature Biotechnology, 30, 434.
-
(2012)
Nature Biotechnology
, vol.30
, pp. 434
-
-
Loman, N.J.1
Misra, R.V.2
Dallman, T.J.3
Constantinidou, C.4
Gharbia, S.E.5
Wain, J.6
Pallen, M.J.7
-
20
-
-
84865179264
-
High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity
-
Loman, N.J., Constantinidou, C., Chan, J.Z.M., Halachev, M., Sergeant, M., Penn, C.W., Robinson, E.R. & Pallen, M.J. (2012b) High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity. Nature Reviews Microbiology, 10, 599.
-
(2012)
Nature Reviews Microbiology
, vol.10
, pp. 599
-
-
Loman, N.J.1
Constantinidou, C.2
Chan, J.Z.M.3
Halachev, M.4
Sergeant, M.5
Penn, C.W.6
Robinson, E.R.7
Pallen, M.J.8
-
21
-
-
84892404218
-
HLA typing from 1000 genomes whole genome and whole exome illumina data
-
Major, E., Rigó, K., Hague, T., Bérces, A. & Juhos, S. (2013) HLA typing from 1000 genomes whole genome and whole exome illumina data. PLoS ONE, 8, e78410.
-
(2013)
PLoS ONE
, vol.8
, pp. e78410
-
-
Major, E.1
Rigó, K.2
Hague, T.3
Bérces, A.4
Juhos, S.5
-
22
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin, M. (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal, 17, 10.
-
(2011)
EMBnet.journal
, vol.17
, pp. 10
-
-
Martin, M.1
-
23
-
-
84870495569
-
Progress in ion torrent semiconductor chip based sequencing
-
Ion Torrent R&D Team
-
Merriman, B., Ion Torrent R&D Team & Rothberg, J.M. (2012) Progress in ion torrent semiconductor chip based sequencing. Electrophoresis, 33, 3397.
-
(2012)
Electrophoresis
, vol.33
, pp. 3397
-
-
Merriman, B.1
Rothberg, J.M.2
-
24
-
-
84878371491
-
Routine performance and errors of 454 HLA exon sequencing in diagnostics
-
Niklas, N., Pröll, J., Danzer, M., Stabentheiner, S., Hofer, K. & Gabriel, C. (2013) Routine performance and errors of 454 HLA exon sequencing in diagnostics. BMC Bioinformatics, 14, 176.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 176
-
-
Niklas, N.1
Pröll, J.2
Danzer, M.3
Stabentheiner, S.4
Hofer, K.5
Gabriel, C.6
-
25
-
-
84890806879
-
HLA-DRB1, -DRB3, -DRB4 and -DRB5 genotyping at a super-high resolution level by long range PCR and high-throughput sequencing
-
Ozaki, Y., Suzuki, S., Shigenari, A., Okudaira, Y., Kikkawa, E., Oka, A. et al. (2014) HLA-DRB1, -DRB3, -DRB4 and -DRB5 genotyping at a super-high resolution level by long range PCR and high-throughput sequencing. Tissue Antigens, 83, 10.
-
(2014)
Tissue Antigens
, vol.83
, pp. 10
-
-
Ozaki, Y.1
Suzuki, S.2
Shigenari, A.3
Okudaira, Y.4
Kikkawa, E.5
Oka, A.6
-
26
-
-
84865591846
-
A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
-
Quail, M.A., Smith, M., Coupland, P., Otto, T.D., Harris, S.R., Connor, T.R., Bertoni, A., Swerdlow, H.P. & Gu, Y. (2012) A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics, 13, 341.
-
(2012)
BMC Genomics
, vol.13
, pp. 341
-
-
Quail, M.A.1
Smith, M.2
Coupland, P.3
Otto, T.D.4
Harris, S.R.5
Connor, T.R.6
Bertoni, A.7
Swerdlow, H.P.8
Gu, Y.9
-
27
-
-
84866632618
-
Super high resolution for single molecule-sequence-based typing of classical HLA loci at the 8-digit level using next generation sequencers
-
Shiina, T., Suzuki, S., Ozaki, Y., Taira, H., Kikkawa, E., Shigenari, A. et al. (2012) Super high resolution for single molecule-sequence-based typing of classical HLA loci at the 8-digit level using next generation sequencers. Tissue Antigens, 80, 305.
-
(2012)
Tissue Antigens
, vol.80
, pp. 305
-
-
Shiina, T.1
Suzuki, S.2
Ozaki, Y.3
Taira, H.4
Kikkawa, E.5
Shigenari, A.6
-
28
-
-
84861865679
-
High-throughput, high-fidelity HLA genotyping with deep sequencing
-
Wang, C., Krishnakumar, S., Wilhelmy, J., Babrzadeh, F., Stepanyan, L., Su, L.F. et al. (2012) High-throughput, high-fidelity HLA genotyping with deep sequencing. Proceedings of the National Academy of Sciences of the USA, 109, 8676.
-
(2012)
Proceedings of the National Academy of Sciences of the USA
, vol.109
, pp. 8676
-
-
Wang, C.1
Krishnakumar, S.2
Wilhelmy, J.3
Babrzadeh, F.4
Stepanyan, L.5
Su, L.F.6
-
29
-
-
84872769379
-
Derivation of HLA types from shotgun sequence datasets
-
Warren, R.L., Choe, G., Freeman, D.J., Castellarin, M., Munro, S., Moore, R. & Holt, R.A. (2012) Derivation of HLA types from shotgun sequence datasets. Genome Medicine, 4, 95.
-
(2012)
Genome Medicine
, vol.4
, pp. 95
-
-
Warren, R.L.1
Choe, G.2
Freeman, D.J.3
Castellarin, M.4
Munro, S.5
Moore, R.6
Holt, R.A.7
-
30
-
-
70449134621
-
Major histocompatibility complex genotyping with massively parallel pyrosequencing
-
Wiseman, R.W., Karl, J.A., Bimber, B.N., O'Leary, C.E., Lank, S.M., Tuscher, J.J. et al. (2009) Major histocompatibility complex genotyping with massively parallel pyrosequencing. Nature Medicine, 15, 1322.
-
(2009)
Nature Medicine
, vol.15
, pp. 1322
-
-
Wiseman, R.W.1
Karl, J.A.2
Bimber, B.N.3
O'Leary, C.E.4
Lank, S.M.5
Tuscher, J.J.6
|