HLA-DRB1, -DRB3, -DRB4 and -DRB5 genotyping at a super-high resolution level by long range PCR and high-throughput sequencing

Tissue Antigens

Volumn 83, Issue 1, 2014, Pages 10-16

  Ozaki, Y ^a   Suzuki, S ^a   Shigenari, A ^a   Okudaira, Y ^a   Kikkawa, E ^a   Oka, A ^a   Ota, M ^b   Mitsunaga, S ^a   Kulski, J K ^a,c   Inoko, H ^a   Shiina, T ^a  

^a TOKAI UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b SHINSHU UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^c UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

Author keywords

DNA typing; Human leukocyte antigen; Next generation sequencing; Polymerase chain reaction; Super high resolution single molecule sequence based typing

Indexed keywords

GENOMIC DNA; HLA DRB1 ANTIGEN; HLA DRB3 ANTIGEN; HLA DRB4 ANTIGEN; HLA DRB5 ANTIGEN;

3' UNTRANSLATED REGION; ARTICLE; DNA FINGERPRINTING; GENE LOCUS; GENOTYPE; HAPLOTYPE; HIGH THROUGHPUT SEQUENCING; HLA MATCHING; HUMAN; INTRON; NULL ALLELE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PYROSEQUENCING; SUPER HIGH RESOLUTION SINGLE MOLECULE SEQUENCE BASED TYPING;

DNA TYPING; HUMAN LEUKOCYTE ANTIGEN; NEXT-GENERATION SEQUENCING; POLYMERASE CHAIN REACTION; SUPER HIGH RESOLUTION SINGLE MOLECULE - SEQUENCE-BASED TYPING;

ALLELES; DNA PRIMERS; GENOTYPE; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HISTOCOMPATIBILITY TESTING; HLA-DRB1 CHAINS; HLA-DRB3 CHAINS; HLA-DRB4 CHAINS; HLA-DRB5 CHAINS; HUMANS; POLYMERASE CHAIN REACTION; TRANSPLANTATION IMMUNOLOGY;

EID: 84890806879     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/tan.12258     Document Type: Article

References (13)

1. Bettinotti MP, Mitsuishi Y, Bibee K, Lau M, Terasaki PI. Comprehensive method for the typing of HLA-A, B, and C alleles by direct sequencing of PCR products obtained from genomic DNA. J Immunother 1997: 20: 425-30.
2. Itoh Y, Mizuki N, Shimada T et al. High-throughput DNA typing of HLA-A, -B, -C, and -DRB1 loci by a PCR-SSOP-Luminex method in the Japanese population. Immunogenetics 2005: 57: 717-29.
3. Adams SD, Barracchini KC, Chen D et al. Ambiguous allele combinations in HLA Class I and Class II sequence-based typing: when precise nucleotide sequencing leads to imprecise allele identification. J Transl Med 2004: 2: 30.
4. Rozemuller EH. Collection and analysis of SBT results data. In: Hansen JA, ed. 13th IHWS Technology Joint Report, Immunobiology of the Human MHC. Seattle: IHWG Press, 2006, 413-6.
5. Lind C, Ferriola D, Mackiewicz K et al. Next-generation sequencing: the solution for high-resolution, unambiguous human leukocyte antigen typing. Hum Immunol 2010: 71: 1033-42.
6. Shiina T, Suzuki S, Ozaki Y et al. Super high resolution for single molecule-sequence-based typing of classical HLA loci at the 8-digit level using next generation sequencers. Tissue Antigens 2012: 80: 305-16.
7. Andersson G, Larhammar D, Widmark E, Servenius B, Peterson PA, Rask L. Class II genes of the human major histocompatibility complex. Organization and evolutionary relationship of the DR beta genes. J Biol Chem 1987: 262: 8748-58.
8. Kita YF, Ando A, Tanaka K et al. Application of high-resolution, massively parallel pyrosequencing for estimation of haplotypes and gene expression levels of swine leukocyte antigen (SLA) class I genes. Immunogenetics 2012: 64: 187-99.
9. Naruse TK, Ando R, Nose Y et al. HLA-DRB4 genotyping by PCR-RFLP: diversity in the associations between HLA-DRB4 and DRB1 alleles. Tissue Antigens 1997: 49: 152-9.
10. Marsh SG, Albert ED, Bodmer WF et al. Nomenclature for factors of the HLA system, 2004. Tissue Antigens 2005: 65: 301-69.
11. Pasi A, Crocchiolo R, Bontempelli M et al. The conundrum of HLA-DRB1*14:01/*14:54 and HLA-DRB3*02:01/*02:02 mismatches in unrelated hematopoietic SCT. Bone Marrow Transplant 2011: 46: 916-22.
12. Andersson G. Evolution of the human HLA-DR region. Front Biosci 1998: 3: d739-45.
13. Robbins F, Hurley CK, Tang T et al. Diversity associated with the second expressed HLA-DRB locus in the human population. Immunogenetics 1997: 46: 104-10.