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Volumn 14, Issue 1, 2013, Pages

Rapid, scalable and highly automated HLA genotyping using next-generation sequencing: A transition from research to diagnostics

Author keywords

[No Author keywords available]

Indexed keywords

HLA A ANTIGEN; HLA ANTIGEN; HLA ANTIGEN CLASS 1; HLA ANTIGEN CLASS 2; HLA B ANTIGEN; HLA C ANTIGEN; HLA DPB1 ANTIGEN; HLA DQB1 ANTIGEN; HLA DRB1 ANTIGEN;

EID: 84875689644     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-221     Document Type: Article
Times cited : (60)

References (29)
  • 1
    • 84861576998 scopus 로고    scopus 로고
    • Advances in graft-versus-host disease biology and therapy
    • 10.1038/nri3212, 22576252
    • Blazar BR, Murphy WJ, Abedi M. Advances in graft-versus-host disease biology and therapy. Nat Rev Immunol 2012, 12:443-458. 10.1038/nri3212, 22576252.
    • (2012) Nat Rev Immunol , vol.12 , pp. 443-458
    • Blazar, B.R.1    Murphy, W.J.2    Abedi, M.3
  • 2
    • 84861548052 scopus 로고    scopus 로고
    • Emerging concepts in haematopoietic cell transplantation
    • 10.1038/nri3226, 22627859
    • Li HW, Sykes M. Emerging concepts in haematopoietic cell transplantation. Nat Rev Immunol 2012, 12:403-416. 10.1038/nri3226, 22627859.
    • (2012) Nat Rev Immunol , vol.12 , pp. 403-416
    • Li, H.W.1    Sykes, M.2
  • 4
    • 50549099222 scopus 로고    scopus 로고
    • Optimal HLA matching in hematopoietic cell transplantation
    • 10.1016/j.coi.2008.06.014, 3182141, 18674615
    • Petersdorf EW. Optimal HLA matching in hematopoietic cell transplantation. Curr Opin Immunol 2008, 20:588-593. 10.1016/j.coi.2008.06.014, 3182141, 18674615.
    • (2008) Curr Opin Immunol , vol.20 , pp. 588-593
    • Petersdorf, E.W.1
  • 5
    • 77954574035 scopus 로고    scopus 로고
    • The impact of HLA genotyping on survival following unrelated donor haematopoietic stem cell transplantation
    • 10.1111/j.1365-2141.2010.08224.x, 20560963
    • Shaw BE, Arguello R, Garcia-Sepulveda CA, Madrigal JA. The impact of HLA genotyping on survival following unrelated donor haematopoietic stem cell transplantation. Br J Haematol 2010, 150:251-258. 10.1111/j.1365-2141.2010.08224.x, 20560963.
    • (2010) Br J Haematol , vol.150 , pp. 251-258
    • Shaw, B.E.1    Arguello, R.2    Garcia-Sepulveda, C.A.3    Madrigal, J.A.4
  • 7
    • 80855144587 scopus 로고    scopus 로고
    • Human leucocyte antigen typing: techniques and technology, a critical appraisal
    • 10.1111/j.1744-313X.2011.01040.x, 22059555
    • Dunn PP. Human leucocyte antigen typing: techniques and technology, a critical appraisal. Int J Immunogenet 2011, 38:463-473. 10.1111/j.1744-313X.2011.01040.x, 22059555.
    • (2011) Int J Immunogenet , vol.38 , pp. 463-473
    • Dunn, P.P.1
  • 9
    • 84864823436 scopus 로고    scopus 로고
    • Nomenclature for factors of the HLA system, update June 2012
    • 10.1111/j.1399-0039.2012.01947.x, 22881061
    • Marsh SG. Nomenclature for factors of the HLA system, update June 2012. Tissue Antigens 2012, 80:289-293. 10.1111/j.1399-0039.2012.01947.x, 22881061.
    • (2012) Tissue Antigens , vol.80 , pp. 289-293
    • Marsh, S.G.1
  • 10
    • 35148863564 scopus 로고    scopus 로고
    • Reanalysis of sequence-based HLA-A, -B and -Cw typings: how ambiguous is today's SBT typing tomorrow
    • 10.1111/j.1399-0039.2007.00921.x, 17868258
    • Voorter CE, Mulkers E, Liebelt P, Sleyster E, van den Berg-Loonen EM. Reanalysis of sequence-based HLA-A, -B and -Cw typings: how ambiguous is today's SBT typing tomorrow. Tissue Antigens 2007, 70:383-389. 10.1111/j.1399-0039.2007.00921.x, 17868258.
    • (2007) Tissue Antigens , vol.70 , pp. 383-389
    • Voorter, C.E.1    Mulkers, E.2    Liebelt, P.3    Sleyster, E.4    van den Berg-Loonen, E.M.5
  • 11
    • 0000794861 scopus 로고    scopus 로고
    • Sequencing of HLA class II genes based on the conserved diversity of the non-coding regions: sequencing based typing of HLA-DRB genes
    • 10.1034/j.1399-0039.1999.530505.x, 10372544
    • Kotsch K, Wehling J, Blasczyk R. Sequencing of HLA class II genes based on the conserved diversity of the non-coding regions: sequencing based typing of HLA-DRB genes. Tissue Antigens 1999, 53:486-497. 10.1034/j.1399-0039.1999.530505.x, 10372544.
    • (1999) Tissue Antigens , vol.53 , pp. 486-497
    • Kotsch, K.1    Wehling, J.2    Blasczyk, R.3
  • 12
    • 79551656262 scopus 로고    scopus 로고
    • Resolution of HLA class I sequence-based typing ambiguities by group-specific sequencing primers
    • 10.1111/j.1399-0039.2010.01616.x, 21299532
    • Lebedeva TV, Mastromarino SA, Lee E, Ohashi M, Alosco SM, Yu N. Resolution of HLA class I sequence-based typing ambiguities by group-specific sequencing primers. Tissue Antigens 2011, 77:247-250. 10.1111/j.1399-0039.2010.01616.x, 21299532.
    • (2011) Tissue Antigens , vol.77 , pp. 247-250
    • Lebedeva, T.V.1    Mastromarino, S.A.2    Lee, E.3    Ohashi, M.4    Alosco, S.M.5    Yu, N.6
  • 13
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - the next generation
    • 10.1038/nrg2626, 19997069
    • Metzker ML. Sequencing technologies - the next generation. Nat Rev Genet 2010, 11:31-46. 10.1038/nrg2626, 19997069.
    • (2010) Nat Rev Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 14
    • 64149123778 scopus 로고    scopus 로고
    • Next-generation sequencing: from basic research to diagnostics
    • 10.1373/clinchem.2008.112789, 19246620
    • Voelkerding KV, Dames SA, Durtschi JD. Next-generation sequencing: from basic research to diagnostics. Clin Chem 2009, 55:641-658. 10.1373/clinchem.2008.112789, 19246620.
    • (2009) Clin Chem , vol.55 , pp. 641-658
    • Voelkerding, K.V.1    Dames, S.A.2    Durtschi, J.D.3
  • 15
    • 70349954786 scopus 로고    scopus 로고
    • Rapid high-throughput human leukocyte antigen typing by massively parallel pyrosequencing for high-resolution allele identification
    • 10.1016/j.humimm.2009.08.009, 19706315
    • Gabriel C, Danzer M, Hackl C, Kopal G, Hufnagl P, Hofer K, Polin H, Stabentheiner S, Proll J. Rapid high-throughput human leukocyte antigen typing by massively parallel pyrosequencing for high-resolution allele identification. Hum Immunol 2009, 70:960-964. 10.1016/j.humimm.2009.08.009, 19706315.
    • (2009) Hum Immunol , vol.70 , pp. 960-964
    • Gabriel, C.1    Danzer, M.2    Hackl, C.3    Kopal, G.4    Hufnagl, P.5    Hofer, K.6    Polin, H.7    Stabentheiner, S.8    Proll, J.9
  • 16
    • 70350043898 scopus 로고    scopus 로고
    • High-resolution, high-throughput HLA genotyping by next-generation sequencing
    • 10.1111/j.1399-0039.2009.01345.x, 19845894
    • Bentley G, Higuchi R, Hoglund B, Goodridge D, Sayer D, Trachtenberg EA, Erlich HA. High-resolution, high-throughput HLA genotyping by next-generation sequencing. Tissue Antigens 2009, 74:393-403. 10.1111/j.1399-0039.2009.01345.x, 19845894.
    • (2009) Tissue Antigens , vol.74 , pp. 393-403
    • Bentley, G.1    Higuchi, R.2    Hoglund, B.3    Goodridge, D.4    Sayer, D.5    Trachtenberg, E.A.6    Erlich, H.A.7
  • 19
    • 84864497082 scopus 로고    scopus 로고
    • Ultra-high resolution HLA genotyping and allele discovery by highly multiplexed cDNA amplicon pyrosequencing
    • 10.1186/1471-2164-13-378, 3575390, 22866951
    • Lank SM, Golbach BA, Creager HM, Wiseman RW, Keskin DB, Reinherz EL, Brusic V, O'Connor DH. Ultra-high resolution HLA genotyping and allele discovery by highly multiplexed cDNA amplicon pyrosequencing. BMC Genomics 2012, 13:378. 10.1186/1471-2164-13-378, 3575390, 22866951.
    • (2012) BMC Genomics , vol.13 , pp. 378
    • Lank, S.M.1    Golbach, B.A.2    Creager, H.M.3    Wiseman, R.W.4    Keskin, D.B.5    Reinherz, E.L.6    Brusic, V.7    O'Connor, D.H.8
  • 20
    • 77956618377 scopus 로고    scopus 로고
    • A novel single cDNA amplicon pyrosequencing method for high-throughput, cost-effective sequence-based HLA class I genotyping
    • 10.1016/j.humimm.2010.07.012, 3191540, 20650293
    • Lank SM, Wiseman RW, Dudley DM, O'Connor DH. A novel single cDNA amplicon pyrosequencing method for high-throughput, cost-effective sequence-based HLA class I genotyping. Hum Immunol 2010, 71:1011-1017. 10.1016/j.humimm.2010.07.012, 3191540, 20650293.
    • (2010) Hum Immunol , vol.71 , pp. 1011-1017
    • Lank, S.M.1    Wiseman, R.W.2    Dudley, D.M.3    O'Connor, D.H.4
  • 24
    • 84861660542 scopus 로고    scopus 로고
    • HLA DNA typing: past, present, and future
    • 10.1111/j.1399-0039.2012.01881.x, 22651253
    • Erlich H. HLA DNA typing: past, present, and future. Tissue Antigens 2012, 80:1-11. 10.1111/j.1399-0039.2012.01881.x, 22651253.
    • (2012) Tissue Antigens , vol.80 , pp. 1-11
    • Erlich, H.1
  • 25
    • 80052015071 scopus 로고    scopus 로고
    • Sequence capture and next generation resequencing of the MHC region highlights potential transplantation determinants in HLA identical haematopoietic stem cell transplantation
    • 10.1093/dnares/dsr008, 3158463, 21622977
    • Proll J, Danzer M, Stabentheiner S, Niklas N, Hackl C, Hofer K, Atzmuller S, Hufnagl P, Gully C, Hauser H, Krieger O, Gabriel C. Sequence capture and next generation resequencing of the MHC region highlights potential transplantation determinants in HLA identical haematopoietic stem cell transplantation. DNA Res 2011, 18:201-210. 10.1093/dnares/dsr008, 3158463, 21622977.
    • (2011) DNA Res , vol.18 , pp. 201-210
    • Proll, J.1    Danzer, M.2    Stabentheiner, S.3    Niklas, N.4    Hackl, C.5    Hofer, K.6    Atzmuller, S.7    Hufnagl, P.8    Gully, C.9    Hauser, H.10    Krieger, O.11    Gabriel, C.12
  • 26
    • 10344257231 scopus 로고    scopus 로고
    • Immunogenetics of HLA null alleles: implications for blood stem cell transplantation
    • 10.1111/j.1399-0039.2004.00322.x, 15546342
    • Elsner HA, Blasczyk R. Immunogenetics of HLA null alleles: implications for blood stem cell transplantation. Tissue Antigens 2004, 64:687-695. 10.1111/j.1399-0039.2004.00322.x, 15546342.
    • (2004) Tissue Antigens , vol.64 , pp. 687-695
    • Elsner, H.A.1    Blasczyk, R.2
  • 27
    • 65449154418 scopus 로고    scopus 로고
    • Method for improving sequence coverage uniformity of targeted genomic intervals amplified by LR-PCR using Illumina GA sequencing-by-synthesis technology
    • 10.2144/000113082, 19317667
    • Harismendy O, Frazer K. Method for improving sequence coverage uniformity of targeted genomic intervals amplified by LR-PCR using Illumina GA sequencing-by-synthesis technology. Biotechniques 2009, 46:229-231. 10.2144/000113082, 19317667.
    • (2009) Biotechniques , vol.46 , pp. 229-231
    • Harismendy, O.1    Frazer, K.2
  • 28
    • 36849090929 scopus 로고    scopus 로고
    • High-throughput sequence-based typing strategy for HLA-DRB1 based on real-time polymerase chain reaction
    • 10.1016/j.humimm.2007.10.005, 18082572
    • Danzer M, Polin H, Proll J, Hofer K, Fae I, Fischer GF, Gabriel C. High-throughput sequence-based typing strategy for HLA-DRB1 based on real-time polymerase chain reaction. Hum Immunol 2007, 68:915-917. 10.1016/j.humimm.2007.10.005, 18082572.
    • (2007) Hum Immunol , vol.68 , pp. 915-917
    • Danzer, M.1    Polin, H.2    Proll, J.3    Hofer, K.4    Fae, I.5    Fischer, G.F.6    Gabriel, C.7
  • 29
    • 34948842866 scopus 로고    scopus 로고
    • Accuracy and quality of massively parallel DNA pyrosequencing
    • 10.1186/gb-2007-8-7-r143, 2323236, 17659080
    • Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol 2007, 8:R143. 10.1186/gb-2007-8-7-r143, 2323236, 17659080.
    • (2007) Genome Biol , vol.8
    • Huse, S.M.1    Huber, J.A.2    Morrison, H.G.3    Sogin, M.L.4    Welch, D.M.5


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