Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment

BMC Bioinformatics

Volumn 16, Issue 1, 2015, Pages

  Bohler, Anwesha ^a,b   Eijssen, Lars M T ^a   van Iersel, Martijn P ^c   Leemans, Christ ^a   Willighagen, Egon L ^a   Kutmon, Martina ^a,b   Jaillard, Magali ^d   Evelo, Chris T ^a,b  

^a MAASTRICHT UNIVERSITY   (Netherlands)

^b Netherlands Consortium for Systems Biology NCSB   (Netherlands)

^c General Bioinformatics Limited   (United Kingdom)

^d BIOMÉRIEUX   (France)

Author keywords

Automation; Biological pathways; Data visualisation; Multi omics; Pathway analysis; Pathway building; R package; Workflow integration

Indexed keywords

AUTOMATION; COMPUTATIONAL LINGUISTICS; COMPUTER PROGRAMMING; DATA HANDLING; DATA VISUALIZATION; FUNCTIONAL ANALYSIS; GENE EXPRESSION; GENES; HIGH LEVEL LANGUAGES; INFORMATION ANALYSIS; VISUALIZATION;

BIOLOGICAL PATHWAYS; DIFFERENTIALLY EXPRESSED GENE; MICROARRAY DATA ANALYSIS; MULTI-OMICS; PATHWAY ANALYSIS; PRELIMINARY ANALYSIS; PROGRAMMING ENVIRONMENT; WORKFLOW INTEGRATION;

QUALITY CONTROL;

MUS;

CYCLOPHOSPHAMIDE; TUMOR MARKER;

ANIMAL; AUTOMATION; COMPUTER GRAPHICS; DRUG EFFECTS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORK; GENETICS; GENOMICS; MOUSE; NEOPLASMS; PROCEDURES; SIGNAL TRANSDUCTION; SOFTWARE; WORKFLOW;

ANIMALS; AUTOMATION; BIOMARKERS, TUMOR; COMPUTER GRAPHICS; CYCLOPHOSPHAMIDE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, NEOPLASTIC; GENE REGULATORY NETWORKS; GENOMICS; MICE; NEOPLASMS; SIGNAL TRANSDUCTION; SOFTWARE; WORKFLOW;

EID: 84939618574     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-015-0708-8     Document Type: Article

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