PathVisio-Validator: A rule-based validation plugin for graphical pathway notations

Bioinformatics

Volumn 28, Issue 6, 2012, Pages 889-890

  Chandan, Kumar ^a   van Iersel, Martijn P ^b   Aladjem, Mirit I ^c   Kohn, Kurt W ^c   Luna, Augustin ^c,d  

^a KESHAV MEMORIAL INSTITUTE OF TECHNOLOGY   (India)

^b MAASTRICHT UNIVERSITY   (Netherlands)

^c NATIONAL CANCER INSTITUTE   (United States)

^d BOSTON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER GRAPHICS; COMPUTER PROGRAM; METHODOLOGY; SYSTEMS BIOLOGY;

COMPUTER GRAPHICS; SOFTWARE; SYSTEMS BIOLOGY;

EID: 84859040275     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr694     Document Type: Article

References (8)

1. Beltrame, L. et al. (2011) The Biological Connection Markup Language: a SBGNcompliant format for visualization, filtering and analysis of biological pathways. Bioinformatics, 27, 2127-2133.
2. Czauderna, T. et al. (2010) Editing, validating and translating of SBGN maps. Bioinformatics, 26, 2340-2341.
3. Demir, E. et al. (2010) The BioPAX community standard for pathway data sharing. Nature Biotechnology, 28, 935-942.
4. Hucka, M. et al. (2003) The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics, 19, 524-531.
5. Luna, A. et al. (2011a) A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-based format, an API, and a validation method. BMC Bioinformatics, 12, 167.
6. Luna, A. et al. (2011b) PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs). Bioinformatics, 27, 2165-2166.
7. Pico, A. R. et al. (2008)WikiPathways: pathway editing for the people. PLoS Biol, 6, 4.
8. van Iersel, M. P. et al. (2008) Presenting and exploring biological pathways with PathVisio. BMC Bioinformatics, 9, 399.