메뉴 건너뛰기




Volumn 15, Issue , 2014, Pages

Revealing editing and SNPs of microRNAs in colon tissues by analyzing high-throughput sequencing profiles of small RNAs

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; MICRORNA; MICRORNA 10A 5P; MICRORNA 125B; MICRORNA 125B 1; MICRORNA 125B 2; MICRORNA 1304; MICRORNA 141; MICRORNA 145; MICRORNA 145 3P; MICRORNA 194 2; MICRORNA 196A 2; MICRORNA 21; MICRORNA 3662A; MICRORNA 3676; MICRORNA 376A 1; MICRORNA 376A 2; MICRORNA 376C; MICRORNA 378B; MICRORNA 378C; MICRORNA 411; MICRORNA 429; MICRORNA 629; MICRORNA 6503 3P; UNCLASSIFIED DRUG; URIDINE;

EID: 84939507241     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-S9-S11     Document Type: Article
Times cited : (15)

References (41)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP: MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 2004; 116:281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 2
  • 8
    • 79959386594 scopus 로고    scopus 로고
    • A comprehensive survey of miRNA repertoire and 3' addition events in the placentas of patients with pre-eclampsia from high-throughput sequencing
    • Guo L, Yang Q, Lu J, Li H, Ge Q, Gu W, Bai Y, Lu Z: A comprehensive survey of miRNA repertoire and 3' addition events in the placentas of patients with pre-eclampsia from high-throughput sequencing. PloS ONE 2011; 6(6):21072.
    • (2011) PloS ONE , vol.6 , Issue.6 , pp. 21072
    • Guo, L.1    Yang, Q.2    Lu, J.3    Li, H.4    Ge, Q.5    Gu, W.6    Bai, Y.7    Lu, Z.8
  • 9
    • 80052527459 scopus 로고    scopus 로고
    • Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
    • Wyman SK, Knouf EC, Parkin RK, Fritz BR, Lin DW, Dennis LM, Krouse MA, Webster PJ, Tewari M: Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity. Genome Research 2011; 21(9):1450-1461.
    • (2011) Genome Research , vol.21 , Issue.9 , pp. 1450-1461
    • Wyman, S.K.1    Knouf, E.C.2    Parkin, R.K.3    Fritz, B.R.4    Lin, D.W.5    Dennis, L.M.6    Krouse, M.A.7    Webster, P.J.8    Tewari, M.9
  • 12
    • 84864580697 scopus 로고    scopus 로고
    • A-to-I editing of microRNAs in the mammalian brain increases during development
    • Ekdahl Y, Farahani HS, Behm M, Lagergren J, Öhman M: A-to-I editing of microRNAs in the mammalian brain increases during development. Genome Research 2012; 22(8):1477-1487.
    • (2012) Genome Research , vol.22 , Issue.8 , pp. 1477-1487
    • Ekdahl, Y.1    Farahani, H.S.2    Behm, M.3    Lagergren, J.4    Öhman, M.5
  • 13
    • 84868153864 scopus 로고    scopus 로고
    • Mono-Uridylation of Pre-MicroRNA as a key step in the biogenesis of group II let-7 MicroRNAs
    • Heo I, Ha M, Lim J, Yoon MJJ, Park JEE, Kwon SC, Chang H, Kim VN: Mono-Uridylation of Pre-MicroRNA as a key step in the biogenesis of group II let-7 MicroRNAs. Cell 2012; 151(3):521-532.
    • (2012) Cell , vol.151 , Issue.3 , pp. 521-532
    • Heo, I.1    Ha, M.2    Lim, J.3    Yoon, M.J.J.4    Park, J.E.E.5    Kwon, S.C.6    Chang, H.7    Kim, V.N.8
  • 14
    • 84878593341 scopus 로고    scopus 로고
    • Reprogramming of microRNAs by adenosine-to-inosine editing and the selective elimination of edited microRNA precursors in mouse oocytes and preimplantation embryos
    • García-López J, Hourcade JdD, del Mazo J: Reprogramming of microRNAs by adenosine-to-inosine editing and the selective elimination of edited microRNA precursors in mouse oocytes and preimplantation embryos. Nucleic Acids Research 2013; 41(10):5483-5493.
    • (2013) Nucleic Acids Research , vol.41 , Issue.10 , pp. 5483-5493
    • García-López, J.1    Hourcade, JdD.2    del Mazo, J.3
  • 17
  • 18
    • 84864622764 scopus 로고    scopus 로고
    • Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs
    • Vesely C, Tauber S, Sedlazeck FJ, von Haeseler A, Jantsch MF: Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs. Genome Research 2012; 22(8):1468-1476.
    • (2012) Genome Research , vol.22 , Issue.8 , pp. 1468-1476
    • Vesely, C.1    Tauber, S.2    Sedlazeck, F.J.3    von Haeseler, A.4    Jantsch, M.F.5
  • 20
    • 84880442139 scopus 로고    scopus 로고
    • The human TUT1 nucleotidyl transferase as a global regulator of microRNA abundance
    • Knouf EC, Wyman SK, Tewari M: The human TUT1 nucleotidyl transferase as a global regulator of microRNA abundance. PloS ONE 2013; 8(7):69630.
    • (2013) PloS ONE , vol.8 , Issue.7 , pp. 69630
    • Knouf, E.C.1    Wyman, S.K.2    Tewari, M.3
  • 21
    • 34447319406 scopus 로고    scopus 로고
    • Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA
    • Duan R, Pak CH, Jin P: Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA. Human Molecular Genetics 2007; 16(9):1124-1131.
    • (2007) Human Molecular Genetics , vol.16 , Issue.9 , pp. 1124-1131
    • Duan, R.1    Pak, C.H.2    Jin, P.3
  • 22
    • 77952918274 scopus 로고    scopus 로고
    • Genetic variation in microRNA networks: the implications for cancer research
    • Ryan BM, Robles AI, Harris CC: Genetic variation in microRNA networks: the implications for cancer research. Nature Reviews Cancer 2010; 10(6):389-402.
    • (2010) Nature Reviews Cancer , vol.10 , Issue.6 , pp. 389-402
    • Ryan, B.M.1    Robles, A.I.2    Harris, C.C.3
  • 28
    • 79957622234 scopus 로고    scopus 로고
    • MiRvar: A comprehensive database for genomic variations in microRNAs
    • Bhartiya D, Laddha SV, Mukhopadhyay A, Scaria V: miRvar: A comprehensive database for genomic variations in microRNAs. Human Mutation 2011; 32(6):2226-2245.
    • (2011) Human Mutation , vol.32 , Issue.6 , pp. 2226-2245
    • Bhartiya, D.1    Laddha, S.V.2    Mukhopadhyay, A.3    Scaria, V.4
  • 31
    • 84857691987 scopus 로고    scopus 로고
    • Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis
    • Gong J, Tong Y, Zhang HM, Wang K, Hu T, Shan G, Sun J, Guo AY: Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis. Human Mutation 2012; 33(1):254-263.
    • (2012) Human Mutation , vol.33 , Issue.1 , pp. 254-263
    • Gong, J.1    Tong, Y.2    Zhang, H.M.3    Wang, K.4    Hu, T.5    Shan, G.6    Sun, J.7    Guo, A.Y.8
  • 32
    • 84863555312 scopus 로고    scopus 로고
    • Impact of microRNA regulation on variation in human gene expression
    • Lu J, Clark AG: Impact of microRNA regulation on variation in human gene expression. Genome Research 2012; 22(7):1243-1254.
    • (2012) Genome Research , vol.22 , Issue.7 , pp. 1243-1254
    • Lu, J.1    Clark, A.G.2
  • 34
    • 84892418266 scopus 로고    scopus 로고
    • Comprehensive analysis of single nucleotide polymorphisms in human MicroRNAs
    • Han M, Zheng Y: Comprehensive analysis of single nucleotide polymorphisms in human MicroRNAs. PLoS ONE 2013; 8(11):78028.
    • (2013) PLoS ONE , vol.8 , Issue.11 , pp. 78028
    • Han, M.1    Zheng, Y.2
  • 35
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg S: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 2009; 10(3):25-10.
    • (2009) Genome Biology , vol.10 , Issue.3 , pp. 25-110
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.4
  • 36
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • Hofacker IL: Vienna RNA secondary structure server. Nucleic Acids Research 2003; 31(13):3429-3431.
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3429-3431
    • Hofacker, I.L.1
  • 37
    • 77954505224 scopus 로고    scopus 로고
    • DARNED: a DAtabase of RNa EDiting in humans
    • Kiran A, Baranov PV: DARNED: a DAtabase of RNa EDiting in humans. Bioinformatics 2010; 26(14):1772-1776.
    • (2010) Bioinformatics , vol.26 , Issue.14 , pp. 1772-1776
    • Kiran, A.1    Baranov, P.V.2
  • 38
    • 77955580091 scopus 로고    scopus 로고
    • Animal microRNA target prediction using diverse sequence-specific determinants
    • Zheng Y, Zhang W: Animal microRNA target prediction using diverse sequence-specific determinants. Journal of Bioinformatics and Computational Biology 2010; 8(4):763-788.
    • (2010) Journal of Bioinformatics and Computational Biology , vol.8 , Issue.4 , pp. 763-788
    • Zheng, Y.1    Zhang, W.2
  • 41
    • 84864716794 scopus 로고    scopus 로고
    • MicroRNA-196a promotes non-small cell lung cancer cell proliferation and invasion through targeting HOXA5
    • Liu Xh, Lu Kh, Wang Km, Sun M, Zhang Eb, Yang Js, Yin Dd, Liu Zl, Zhou J, Liu Zj, et al: MicroRNA-196a promotes non-small cell lung cancer cell proliferation and invasion through targeting HOXA5. BMC Cancer 2012; 12(1):348.
    • (2012) BMC Cancer , vol.12 , Issue.1 , pp. 348
    • Xh, L.1    Kh, L.2    Km, W.3    Sun, M.4    Eb, Z.5    Js, Y.6    Dd, Y.7    Zl, L.8    Zhou, J.9    Zj, L.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.