-
1
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel DP: MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 2004; 116:281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
2
-
-
3342969381
-
RNA editing of a miRNA precursor
-
Luciano DJ, Mirsky H, Vendetti NJ, Maas S: RNA editing of a miRNA precursor. RNA 2004, 10(8):1174-1177.
-
(2004)
RNA
, vol.10
, Issue.8
, pp. 1174-1177
-
-
Luciano, D.J.1
Mirsky, H.2
Vendetti, N.J.3
Maas, S.4
-
3
-
-
33745053086
-
RNA editing of human microRNAs
-
Blow MJ, Grocock RJ, Van Dongen S, Enright AJ, Dicks E, Futreal PA, Wooster R, Stratton MR, et al: RNA editing of human microRNAs. Genome Biology 2006; 7(4):27.
-
(2006)
Genome Biology
, vol.7
, Issue.4
, pp. 27
-
-
Blow, M.J.1
Grocock, R.J.2
Van Dongen, S.3
Enright, A.J.4
Dicks, E.5
Futreal, P.A.6
Wooster, R.7
Stratton, M.R.8
-
4
-
-
52649128795
-
Frequency and fate of microRNA editing in human brain
-
Kawahara Y, Megraw M, Kreider E, Iizasa H, Valente L, Hatzigeorgiou AG, Nishikura K: Frequency and fate of microRNA editing in human brain. Nucleic Acids Research 2008; 36(16):5270-5280.
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.16
, pp. 5270-5280
-
-
Kawahara, Y.1
Megraw, M.2
Kreider, E.3
Iizasa, H.4
Valente, L.5
Hatzigeorgiou, A.G.6
Nishikura, K.7
-
5
-
-
77952368550
-
Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
-
Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP: Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes & Development 2010; 24(10):992-1009.
-
(2010)
Genes & Development
, vol.24
, Issue.10
, pp. 992-1009
-
-
Chiang, H.R.1
Schoenfeld, L.W.2
Ruby, J.G.3
Auyeung, V.C.4
Spies, N.5
Baek, D.6
Johnston, W.K.7
Russ, C.8
Luo, S.9
Babiarz, J.E.10
Blelloch, R.11
Schroth, G.P.12
Nusbaum, C.13
Bartel, D.P.14
-
6
-
-
75649089335
-
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
-
de Hoon MJL, Taft RJ, Hashimoto T, Kanamori-Katayama M, Kawaji H, Kawano M, Kishima M, Lassmann T, Faulkner GJ, Mattick JS, Daub CO, Carninci P, Kawai J, Suzuki H, Hayashizaki Y: Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. Genome Research 2010; 20(2):257-264.
-
(2010)
Genome Research
, vol.20
, Issue.2
, pp. 257-264
-
-
de Hoon, M.J.L.1
Taft, R.J.2
Hashimoto, T.3
Kanamori-Katayama, M.4
Kawaji, H.5
Kawano, M.6
Kishima, M.7
Lassmann, T.8
Faulkner, G.J.9
Mattick, J.S.10
Daub, C.O.11
Carninci, P.12
Kawai, J.13
Suzuki, H.14
Hayashizaki, Y.15
-
7
-
-
78649255480
-
A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness
-
Burroughs AM, Ando Y, de Hoon MJL, Tomaru Y, Nishibu T, Ukekawa R, Funakoshi T, Kurokawa T, Suzuki H, Hayashizaki Y, Daub CO: A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness. Genome Research 2010; 20(10):1398-1410.
-
(2010)
Genome Research
, vol.20
, Issue.10
, pp. 1398-1410
-
-
Burroughs, A.M.1
Ando, Y.2
de Hoon, M.J.L.3
Tomaru, Y.4
Nishibu, T.5
Ukekawa, R.6
Funakoshi, T.7
Kurokawa, T.8
Suzuki, H.9
Hayashizaki, Y.10
Daub, C.O.11
-
8
-
-
79959386594
-
A comprehensive survey of miRNA repertoire and 3' addition events in the placentas of patients with pre-eclampsia from high-throughput sequencing
-
Guo L, Yang Q, Lu J, Li H, Ge Q, Gu W, Bai Y, Lu Z: A comprehensive survey of miRNA repertoire and 3' addition events in the placentas of patients with pre-eclampsia from high-throughput sequencing. PloS ONE 2011; 6(6):21072.
-
(2011)
PloS ONE
, vol.6
, Issue.6
, pp. 21072
-
-
Guo, L.1
Yang, Q.2
Lu, J.3
Li, H.4
Ge, Q.5
Gu, W.6
Bai, Y.7
Lu, Z.8
-
9
-
-
80052527459
-
Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
-
Wyman SK, Knouf EC, Parkin RK, Fritz BR, Lin DW, Dennis LM, Krouse MA, Webster PJ, Tewari M: Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity. Genome Research 2011; 21(9):1450-1461.
-
(2011)
Genome Research
, vol.21
, Issue.9
, pp. 1450-1461
-
-
Wyman, S.K.1
Knouf, E.C.2
Parkin, R.K.3
Fritz, B.R.4
Lin, D.W.5
Dennis, L.M.6
Krouse, M.A.7
Webster, P.J.8
Tewari, M.9
-
10
-
-
79551543164
-
Sequencing and bioinformatics-based analyses of the microRNA transcriptome in Hepatitis B-related hepatocellular carcinoma
-
Mizuguchi Y, Mishima T, Yokomuro S, Arima Y, Kawahigashi Y, Shigehara K, Kanda T, Yoshida H, Uchida E, Tajiri T, et al: Sequencing and bioinformatics-based analyses of the microRNA transcriptome in Hepatitis B-related hepatocellular carcinoma. PloS ONE 2011; 6(1):15304.
-
(2011)
PloS ONE
, vol.6
, Issue.1
, pp. 15304
-
-
Mizuguchi, Y.1
Mishima, T.2
Yokomuro, S.3
Arima, Y.4
Kawahigashi, Y.5
Shigehara, K.6
Kanda, T.7
Yoshida, H.8
Uchida, E.9
Tajiri, T.10
-
11
-
-
84864591239
-
Systematic identification of edited microRNAs in the human brain
-
Alon S, Mor E, Vigneault F, Church GM, Locatelli F, Galeano F, Gallo A, Shomron N, Eisenberg E: Systematic identification of edited microRNAs in the human brain. Genome Research 2012; 22(8):1533-1540.
-
(2012)
Genome Research
, vol.22
, Issue.8
, pp. 1533-1540
-
-
Alon, S.1
Mor, E.2
Vigneault, F.3
Church, G.M.4
Locatelli, F.5
Galeano, F.6
Gallo, A.7
Shomron, N.8
Eisenberg, E.9
-
12
-
-
84864580697
-
A-to-I editing of microRNAs in the mammalian brain increases during development
-
Ekdahl Y, Farahani HS, Behm M, Lagergren J, Öhman M: A-to-I editing of microRNAs in the mammalian brain increases during development. Genome Research 2012; 22(8):1477-1487.
-
(2012)
Genome Research
, vol.22
, Issue.8
, pp. 1477-1487
-
-
Ekdahl, Y.1
Farahani, H.S.2
Behm, M.3
Lagergren, J.4
Öhman, M.5
-
13
-
-
84868153864
-
Mono-Uridylation of Pre-MicroRNA as a key step in the biogenesis of group II let-7 MicroRNAs
-
Heo I, Ha M, Lim J, Yoon MJJ, Park JEE, Kwon SC, Chang H, Kim VN: Mono-Uridylation of Pre-MicroRNA as a key step in the biogenesis of group II let-7 MicroRNAs. Cell 2012; 151(3):521-532.
-
(2012)
Cell
, vol.151
, Issue.3
, pp. 521-532
-
-
Heo, I.1
Ha, M.2
Lim, J.3
Yoon, M.J.J.4
Park, J.E.E.5
Kwon, S.C.6
Chang, H.7
Kim, V.N.8
-
14
-
-
84878593341
-
Reprogramming of microRNAs by adenosine-to-inosine editing and the selective elimination of edited microRNA precursors in mouse oocytes and preimplantation embryos
-
García-López J, Hourcade JdD, del Mazo J: Reprogramming of microRNAs by adenosine-to-inosine editing and the selective elimination of edited microRNA precursors in mouse oocytes and preimplantation embryos. Nucleic Acids Research 2013; 41(10):5483-5493.
-
(2013)
Nucleic Acids Research
, vol.41
, Issue.10
, pp. 5483-5493
-
-
García-López, J.1
Hourcade, JdD.2
del Mazo, J.3
-
15
-
-
0031230642
-
A standardized nomenclature for adenosine deaminases that act on RNA
-
Bass B, Nishikura K, Keller W, Seeburg PH, Emeson R, O'connell M, Samuel C, Herbert A: A standardized nomenclature for adenosine deaminases that act on RNA. RNA 1997, 3(9):947.
-
(1997)
RNA
, vol.3
, Issue.9
, pp. 947
-
-
Bass, B.1
Nishikura, K.2
Keller, W.3
Seeburg, P.H.4
Emeson, R.5
O'connell, M.6
Samuel, C.7
Herbert, A.8
-
16
-
-
30044443191
-
Modulation of microRNA processing and expression through RNA editing by ADAR deaminases
-
Yang W, Chendrimada TP, Wang Q, Higuchi M, Seeburg PH, Shiekhattar R, Nishikura K: Modulation of microRNA processing and expression through RNA editing by ADAR deaminases. Nature Structural & Molecular Biology 2005; 13(1):13-21.
-
(2005)
Nature Structural & Molecular Biology
, vol.13
, Issue.1
, pp. 13-21
-
-
Yang, W.1
Chendrimada, T.P.2
Wang, Q.3
Higuchi, M.4
Seeburg, P.H.5
Shiekhattar, R.6
Nishikura, K.7
-
17
-
-
34547629436
-
RNA editing of the microRNA-151 precursor blocks cleavage by the Dicer-TRBP complex
-
Kawahara Y, Zinshteyn B, Chendrimada TP, Shiekhattar R, Nishikura K: RNA editing of the microRNA-151 precursor blocks cleavage by the Dicer-TRBP complex. EMBO Reports 2007; 8(8):763-769.
-
(2007)
EMBO Reports
, vol.8
, Issue.8
, pp. 763-769
-
-
Kawahara, Y.1
Zinshteyn, B.2
Chendrimada, T.P.3
Shiekhattar, R.4
Nishikura, K.5
-
18
-
-
84864622764
-
Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs
-
Vesely C, Tauber S, Sedlazeck FJ, von Haeseler A, Jantsch MF: Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs. Genome Research 2012; 22(8):1468-1476.
-
(2012)
Genome Research
, vol.22
, Issue.8
, pp. 1468-1476
-
-
Vesely, C.1
Tauber, S.2
Sedlazeck, F.J.3
von Haeseler, A.4
Jantsch, M.F.5
-
19
-
-
33847317017
-
Redirection of silencing targets by Adenosine-to-Inosine editing of miRNAs
-
Kawahara Y, Zinshteyn B, Sethupathy P, Iizasa H, Hatzigeorgiou AG, Nishikura K: Redirection of silencing targets by Adenosine-to-Inosine editing of miRNAs. Science 2007; 315(5815):1137-1140.
-
(2007)
Science
, vol.315
, Issue.5815
, pp. 1137-1140
-
-
Kawahara, Y.1
Zinshteyn, B.2
Sethupathy, P.3
Iizasa, H.4
Hatzigeorgiou, A.G.5
Nishikura, K.6
-
20
-
-
84880442139
-
The human TUT1 nucleotidyl transferase as a global regulator of microRNA abundance
-
Knouf EC, Wyman SK, Tewari M: The human TUT1 nucleotidyl transferase as a global regulator of microRNA abundance. PloS ONE 2013; 8(7):69630.
-
(2013)
PloS ONE
, vol.8
, Issue.7
, pp. 69630
-
-
Knouf, E.C.1
Wyman, S.K.2
Tewari, M.3
-
21
-
-
34447319406
-
Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA
-
Duan R, Pak CH, Jin P: Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA. Human Molecular Genetics 2007; 16(9):1124-1131.
-
(2007)
Human Molecular Genetics
, vol.16
, Issue.9
, pp. 1124-1131
-
-
Duan, R.1
Pak, C.H.2
Jin, P.3
-
22
-
-
77952918274
-
Genetic variation in microRNA networks: the implications for cancer research
-
Ryan BM, Robles AI, Harris CC: Genetic variation in microRNA networks: the implications for cancer research. Nature Reviews Cancer 2010; 10(6):389-402.
-
(2010)
Nature Reviews Cancer
, vol.10
, Issue.6
, pp. 389-402
-
-
Ryan, B.M.1
Robles, A.I.2
Harris, C.C.3
-
23
-
-
27244434788
-
A MicroRNA signature associated with prognosis and progression in chronic lymphocytic leukemia
-
Calin GA, Ferracin M, Cimmino A, Di Leva G, Shimizu M, Wojcik SE, Iorio MV, Visone R, Sever NI, Fabbri M, et al: A MicroRNA signature associated with prognosis and progression in chronic lymphocytic leukemia. New England Journal of Medicine 2005; 353(17):1793-1801.
-
(2005)
New England Journal of Medicine
, vol.353
, Issue.17
, pp. 1793-1801
-
-
Calin, G.A.1
Ferracin, M.2
Cimmino, A.3
Di Leva, G.4
Shimizu, M.5
Wojcik, S.E.6
Iorio, M.V.7
Visone, R.8
Sever, N.I.9
Fabbri, M.10
-
24
-
-
44449153200
-
Common SNP in pre-miR-146a decreases mature miR expression and predisposes to papillary thyroid carcinoma
-
Jazdzewski K, Murray EL, Franssila K, Jarzab B, Schoenberg DR, de La Chapelle A: Common SNP in pre-miR-146a decreases mature miR expression and predisposes to papillary thyroid carcinoma. Proceedings of the National Academy of Sciences of the United States of America 2008; 105(20):7269-7274.
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.20
, pp. 7269-7274
-
-
Jazdzewski, K.1
Murray, E.L.2
Franssila, K.3
Jarzab, B.4
Schoenberg, D.R.5
de La Chapelle, A.6
-
25
-
-
67349223927
-
Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss
-
Á Mencía, Modamio-Høybjør S, Redshaw N, Morín M, Mayo-Merino F, Olavarrieta L, Aguirre LA, Del Castillo I, Steel KP, Dalmay T, et al: Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss. Nature Genetics 2009; 41(5):609-613.
-
(2009)
Nature Genetics
, vol.41
, Issue.5
, pp. 609-613
-
-
Mencía, A.1
Modamio-Høybjør, S.2
Redshaw, N.3
Morín, M.4
Mayo-Merino, F.5
Olavarrieta, L.6
Aguirre, L.A.7
Del Castillo, I.8
Steel, K.P.9
Dalmay, T.10
-
26
-
-
67650995908
-
MicroRNA miR-196a-2 and breast cancer: a genetic and epigenetic association study and functional analysis
-
Hoffman AE, Zheng T, Yi C, Leaderer D, Weidhaas J, Slack F, Zhang Y, Paranjape T, Zhu Y: microRNA miR-196a-2 and breast cancer: a genetic and epigenetic association study and functional analysis. Cancer Research 2009; 69(14):5970-5977.
-
(2009)
Cancer Research
, vol.69
, Issue.14
, pp. 5970-5977
-
-
Hoffman, A.E.1
Zheng, T.2
Yi, C.3
Leaderer, D.4
Weidhaas, J.5
Slack, F.6
Zhang, Y.7
Paranjape, T.8
Zhu, Y.9
-
27
-
-
78650986168
-
The association between two polymorphisms in pre-miRNAs and breast cancer risk: a meta-analysis
-
Gao LB, Bai P, Pan XM, Jia J, Li LJ, Liang WB, Tang M, Zhang LS, Wei YG, Zhang L: The association between two polymorphisms in pre-miRNAs and breast cancer risk: a meta-analysis. Breast Cancer Research and Treatment 2011; 125(2):571-574.
-
(2011)
Breast Cancer Research and Treatment
, vol.125
, Issue.2
, pp. 571-574
-
-
Gao, L.B.1
Bai, P.2
Pan, X.M.3
Jia, J.4
Li, L.J.5
Liang, W.B.6
Tang, M.7
Zhang, L.S.8
Wei, Y.G.9
Zhang, L.10
-
28
-
-
79957622234
-
MiRvar: A comprehensive database for genomic variations in microRNAs
-
Bhartiya D, Laddha SV, Mukhopadhyay A, Scaria V: miRvar: A comprehensive database for genomic variations in microRNAs. Human Mutation 2011; 32(6):2226-2245.
-
(2011)
Human Mutation
, vol.32
, Issue.6
, pp. 2226-2245
-
-
Bhartiya, D.1
Laddha, S.V.2
Mukhopadhyay, A.3
Scaria, V.4
-
31
-
-
84857691987
-
Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis
-
Gong J, Tong Y, Zhang HM, Wang K, Hu T, Shan G, Sun J, Guo AY: Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis. Human Mutation 2012; 33(1):254-263.
-
(2012)
Human Mutation
, vol.33
, Issue.1
, pp. 254-263
-
-
Gong, J.1
Tong, Y.2
Zhang, H.M.3
Wang, K.4
Hu, T.5
Shan, G.6
Sun, J.7
Guo, A.Y.8
-
32
-
-
84863555312
-
Impact of microRNA regulation on variation in human gene expression
-
Lu J, Clark AG: Impact of microRNA regulation on variation in human gene expression. Genome Research 2012; 22(7):1243-1254.
-
(2012)
Genome Research
, vol.22
, Issue.7
, pp. 1243-1254
-
-
Lu, J.1
Clark, A.G.2
-
33
-
-
84856386410
-
Catalog of MicroRNA Seed Polymorphisms in Vertebrates
-
Zorc M, Skok DJ, Godnic I, Calin GA, Horvat S, Jiang Z, Dovc P, Kunej T: Catalog of MicroRNA Seed Polymorphisms in Vertebrates. PloS ONE 2012; 7(1):30737.
-
(2012)
PloS ONE
, vol.7
, Issue.1
, pp. 30737
-
-
Zorc, M.1
Skok, D.J.2
Godnic, I.3
Calin, G.A.4
Horvat, S.5
Jiang, Z.6
Dovc, P.7
Kunej, T.8
-
34
-
-
84892418266
-
Comprehensive analysis of single nucleotide polymorphisms in human MicroRNAs
-
Han M, Zheng Y: Comprehensive analysis of single nucleotide polymorphisms in human MicroRNAs. PLoS ONE 2013; 8(11):78028.
-
(2013)
PLoS ONE
, vol.8
, Issue.11
, pp. 78028
-
-
Han, M.1
Zheng, Y.2
-
35
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg S: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 2009; 10(3):25-10.
-
(2009)
Genome Biology
, vol.10
, Issue.3
, pp. 25-110
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.4
-
36
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker IL: Vienna RNA secondary structure server. Nucleic Acids Research 2003; 31(13):3429-3431.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
37
-
-
77954505224
-
DARNED: a DAtabase of RNa EDiting in humans
-
Kiran A, Baranov PV: DARNED: a DAtabase of RNa EDiting in humans. Bioinformatics 2010; 26(14):1772-1776.
-
(2010)
Bioinformatics
, vol.26
, Issue.14
, pp. 1772-1776
-
-
Kiran, A.1
Baranov, P.V.2
-
38
-
-
77955580091
-
Animal microRNA target prediction using diverse sequence-specific determinants
-
Zheng Y, Zhang W: Animal microRNA target prediction using diverse sequence-specific determinants. Journal of Bioinformatics and Computational Biology 2010; 8(4):763-788.
-
(2010)
Journal of Bioinformatics and Computational Biology
, vol.8
, Issue.4
, pp. 763-788
-
-
Zheng, Y.1
Zhang, W.2
-
40
-
-
67651177709
-
High miR-196a levels promote the oncogenic phenotype of colorectal cancer cells
-
Schimanski CC, Frerichs K, Rahman F, Berger M, Lang H, Galle PR, Moehler M, Gockel I: High miR-196a levels promote the oncogenic phenotype of colorectal cancer cells. World journal of gastroenterology: WJG 2009; 15(17):2089.
-
(2009)
World journal of gastroenterology: WJG
, vol.15
, Issue.17
, pp. 2089
-
-
Schimanski, C.C.1
Frerichs, K.2
Rahman, F.3
Berger, M.4
Lang, H.5
Galle, P.R.6
Moehler, M.7
Gockel, I.8
-
41
-
-
84864716794
-
MicroRNA-196a promotes non-small cell lung cancer cell proliferation and invasion through targeting HOXA5
-
Liu Xh, Lu Kh, Wang Km, Sun M, Zhang Eb, Yang Js, Yin Dd, Liu Zl, Zhou J, Liu Zj, et al: MicroRNA-196a promotes non-small cell lung cancer cell proliferation and invasion through targeting HOXA5. BMC Cancer 2012; 12(1):348.
-
(2012)
BMC Cancer
, vol.12
, Issue.1
, pp. 348
-
-
Xh, L.1
Kh, L.2
Km, W.3
Sun, M.4
Eb, Z.5
Js, Y.6
Dd, Y.7
Zl, L.8
Zhou, J.9
Zj, L.10
|