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Volumn 8, Issue 4, 2010, Pages 763-788

Animal microrna target prediction using diverse sequence-specific determinants

Author keywords

MicroRNA; microRNA target prediction; sequence analysis; sequence specific determinants

Indexed keywords

ANIMALIA; CAENORHABDITIS ELEGANS; DROSOPHILA MELANOGASTER; HOMO SAPIENS; MUS MUSCULUS;

EID: 77955580091     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0219720010004896     Document Type: Article
Times cited : (17)

References (40)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP, MicroRNAs: Genomics, biogenesis, mechanism, and function, Cell 116:281-297, 2004.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 33645294070 scopus 로고    scopus 로고
    • Oncomirs -microRNAs with a role in cancer
    • Esquela-Kerscher A, Slack FJ, Oncomirs -microRNAs with a role in cancer, Nat Rev Cancer 6:259-269, 2006.
    • (2006) Nat Rev Cancer , vol.6 , pp. 259-269
    • Esquela-Kerscher, A.1    Slack, F.J.2
  • 3
    • 0037144457 scopus 로고    scopus 로고
    • Cleavage of scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
    • Llave C, Xie Z, Kasschau KD, Carrington JC, Cleavage of scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA, Science 297(5589):2053-2056, 2002.
    • (2002) Science , vol.297 , Issue.5589 , pp. 2053-2056
    • Llave, C.1    Xie, Z.2    Kasschau, K.D.3    Carrington, J.C.4
  • 4
    • 0037224921 scopus 로고    scopus 로고
    • A biochemical framework for RNA silencing in plants
    • Tang G, Reinhart BJ, Bartel DP, Zamore PD, A biochemical framework for RNA silencing in plants, Genes Dev 17(1):49-63, 2003.
    • (2003) Genes Dev , vol.17 , Issue.1 , pp. 49-63
    • Tang, G.1    Reinhart, B.J.2    Bartel, D.P.3    Zamore, P.D.4
  • 5
    • 2142654329 scopus 로고    scopus 로고
    • MicroRNA-directed cleavage of HOXB8 mRNA
    • Yekta S, Shih I-H, Bartel DP, MicroRNA-directed cleavage of HOXB8 mRNA, Science 304(5670):594-596, 2004.
    • (2004) Science , vol.304 , Issue.5670 , pp. 594-596
    • Yekta, S.1    Shih, I.-H.2    Bartel, D.P.3
  • 8
    • 33645119514 scopus 로고    scopus 로고
    • MicroRNAs direct rapid deadenylation of mRNA
    • Wu L, Fan J, Belasco JG, MicroRNAs direct rapid deadenylation of mRNA, Proc Natl Acad Sci USA 103(11):4034-4039, 2006.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.11 , pp. 4034-4039
    • Wu, L.1    Fan, J.2    Belasco, J.G.3
  • 10
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP, Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets, Cell 120:15-20, 2005.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 14
    • 26444449184 scopus 로고    scopus 로고
    • Computational identification of microRNA targets
    • Rajewsky N, Socci N, Computational identification of microRNA targets, Genome Biol 5(2):P5, 2004.
    • (2004) Genome Biol , vol.5 , Issue.2
    • Rajewsky, N.1    Socci, N.2
  • 15
    • 28944439309 scopus 로고    scopus 로고
    • Animal microRNAs confer robustness to gene expression and have a significant impact on 3'utr evolution
    • Stark A, Brennecke J, Bushati N, Russell RBB, Cohen SMM, Animal microRNAs confer robustness to gene expression and have a significant impact on 3'utr evolution, Cell 123(6):1133-1146, 2005.
    • (2005) Cell , vol.123 , Issue.6 , pp. 1133-1146
    • Stark, A.1    Brennecke, J.2    Bushati, N.3    Rbb, R.4    Smm, C.5
  • 16
    • 4644237189 scopus 로고    scopus 로고
    • Fast and effective prediction of microRNA/target duplexes
    • Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R. Fast and effective prediction of microRNA/target duplexes, RNA 10(10):1507-1517, 2004.
    • (2004) RNA , vol.10 , Issue.10 , pp. 1507-1517
    • Rehmsmeier, M.1    Steffen, P.2    Hochsmann, M.3    Giegerich, R.4
  • 17
    • 33748587841 scopus 로고    scopus 로고
    • A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes
    • Miranda KC, Huynh T, Tay Y, Ang Y-S, Tam W-L, Thomson AM, Lim B, Rigoutsos I, A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes, Cell 126(6):1203-1217, 2006.
    • (2006) Cell , vol.126 , Issue.6 , pp. 1203-1217
    • Miranda, K.C.1    Huynh, T.2    Tay, Y.3    Ang, Y.-S.4    Tam, W.-L.5    Thomson, A.M.6    Lim, B.7    Rigoutsos, I.8
  • 18
    • 34748821761 scopus 로고    scopus 로고
    • The role of site accessibility in microRNA target recognition
    • Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E, The role of site accessibility in microRNA target recognition, Nat Genet 39(10):1278-1284, 2007.
    • (2007) Nat Genet , vol.39 , Issue.10 , pp. 1278-1284
    • Kertesz, M.1    Iovino, N.2    Unnerstall, U.3    Gaul, U.4    Segal, E.5
  • 20
    • 12744262431 scopus 로고    scopus 로고
    • Prediction and identification of arabidopsis thaliana microRNAs and their mRNA targets
    • Wang XJ, Reyes JL, Chua NH, Gaasterland T, Prediction and identification of arabidopsis thaliana microRNAs and their mRNA targets, Genome Biol 5(9):R65, 2004.
    • (2004) Genome Biol , vol.5 , Issue.9
    • Wang, X.J.1    Reyes, J.L.2    Chua, N.H.3    Gaasterland, T.4
  • 21
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    • Jones-Rhoades MW, Bartel DP, Computational identification of plant microRNAs and their targets, including a stress-induced miRNA, Mol Cell 14(6):787-799, 2004.
    • (2004) Mol Cell , vol.14 , Issue.6 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 22
    • 23144458275 scopus 로고    scopus 로고
    • MiRU: An automated plant miRNA target prediction server
    • Zhang Y, miRU: An automated plant miRNA target prediction server, Nucleic Acids Res 33(suppl 2):W701-704, 2005.
    • (2005) Nucleic Acids Res , vol.33 , Issue.SUPPL. 2
    • Zhang, Y.1
  • 23
    • 33745248430 scopus 로고    scopus 로고
    • MicroRNA target predictions in animals
    • (6s)
    • Rajewsky N, microRNA target predictions in animals, Nat Genet 38 Suppl 1(6s):2006.
    • (2006) Nat Genet , vol.38 , Issue.SUPPL. 1
    • Rajewsky, N.1
  • 25
    • 0942301280 scopus 로고    scopus 로고
    • The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3'UTR
    • Vella MC, Choi E-Y, Lin S-Y, Reinert K, Slack FJ, The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3'UTR, Genes Dev 18(2):132-137, 2004.
    • (2004) Genes Dev , vol.18 , Issue.2 , pp. 132-137
    • Vella, M.C.1    Choi, E.-Y.2    Lin, S.-Y.3    Reinert, K.4    Slack, F.J.5
  • 26
    • 35548996307 scopus 로고    scopus 로고
    • Determinants of targeting by endogenous and exogenous microRNAs and siRNAs
    • Nielsen CB, Shomron N, Sandberg R, Hornstein E, Kitzman J, Burge CB, Determinants of targeting by endogenous and exogenous microRNAs and siRNAs, RNA 13(11):1894-1910, 2007.
    • (2007) RNA , vol.13 , Issue.11 , pp. 1894-1910
    • Nielsen, C.B.1    Shomron, N.2    Sandberg, R.3    Hornstein, E.4    Kitzman, J.5    Burge, C.B.6
  • 31
    • 70350707749 scopus 로고    scopus 로고
    • Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets
    • Hausser J, Landthaler M, Jaskiewicz L, Gaidatzis D, Zavolan M, Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets, Genome Res 19(11):2009-2020, 2009.
    • (2009) Genome Res , vol.19 , Issue.11 , pp. 2009-2020
    • Hausser, J.1    Landthaler, M.2    Jaskiewicz, L.3    Gaidatzis, D.4    Zavolan, M.5
  • 32
    • 31044444975 scopus 로고    scopus 로고
    • TarBase: A comprehensive database of experimentally supported animal microRNA targets
    • Sethupathy P, Corda B, Hatzigeorgiou AG, TarBase: A comprehensive database of experimentally supported animal microRNA targets, RNA 12(2):192-197, 2006.
    • (2006) RNA , vol.12 , Issue.2 , pp. 192-197
    • Sethupathy, P.1    Corda, B.2    Hatzigeorgiou, A.G.3
  • 33
    • 33750318273 scopus 로고    scopus 로고
    • A guide through present computational approaches for the identification of mammalian microRNA targets
    • Sethupathy P, Megraw M, Hatzigeorgiou AG, A guide through present computational approaches for the identification of mammalian microRNA targets, Nat Methods 3(11):881-886, 2006.
    • (2006) Nat Methods , vol.3 , Issue.11 , pp. 881-886
    • Sethupathy, P.1    Megraw, M.2    Hatzigeorgiou, A.G.3
  • 36
    • 42449086421 scopus 로고    scopus 로고
    • MiR-148 targets human DNMT3b protein coding region
    • Duursma AM, Kedde M, Schrier M, leSage C, Agami R, miR-148 targets human DNMT3b protein coding region, RNA 14(5):872-877, 2008.
    • (2008) RNA , vol.14 , Issue.5 , pp. 872-877
    • Duursma, A.M.1    Kedde, M.2    Schrier, M.3    Lesage, C.4    Agami, R.5
  • 37
    • 38849145861 scopus 로고    scopus 로고
    • Prediction of both conserved and nonconserved microRNA targets in animals
    • Wang X, El Naqa IM, Prediction of both conserved and nonconserved microRNA targets in animals, Bioinformatics 24(3):325-332, 2008.
    • (2008) Bioinformatics , vol.24 , Issue.3 , pp. 325-332
    • Wang, X.1    El Naqa, I.M.2
  • 38
    • 1642374097 scopus 로고    scopus 로고
    • Specificity of microRNA target selection in translational repression
    • Doench JG, Sharp PA, Specificity of microRNA target selection in translational repression, Genes Dev 18(5):504-511, 2004.
    • (2004) Genes Dev , vol.18 , Issue.5 , pp. 504-511
    • Doench, J.G.1    Sharp, P.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.