-
1
-
-
84903745828
-
Genomic support for a moa-tinamou clade and adaptive morphological convergence in flightless ratites
-
COI: 1:CAS:528:DC%2BC2cXhtFShs7nK, PID: 24825849
-
Baker AJ, Haddrath O, McPherson JD, Cloutier A (2014) Genomic support for a moa-tinamou clade and adaptive morphological convergence in flightless ratites. Mol Biol Evol 31:1686–1696. doi:10.1093/molbev/msu153
-
(2014)
Mol Biol Evol
, vol.31
, pp. 1686-1696
-
-
Baker, A.J.1
Haddrath, O.2
McPherson, J.D.3
Cloutier, A.4
-
2
-
-
2142738304
-
WebLogo: a sequence logo generator
-
COI: 1:CAS:528:DC%2BD2cXkvFGht7Y%3D, PID: 15173120
-
Crooks GE, Hon G, Chandonia J-M, Brenner SE (2004) WebLogo: a sequence logo generator. Genome Res 14:1188–1190. doi:10.1101/gr.849004
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.-M.3
Brenner, S.E.4
-
3
-
-
0036796354
-
Mammalian retroelements
-
COI: 1:CAS:528:DC%2BD38XotVKgtLw%3D, PID: 12368238
-
Deininger PL, Batzer MA (2002) Mammalian retroelements. Genome Res 12:1455–1465. doi:10.1101/gr.282402
-
(2002)
Genome Res
, vol.12
, pp. 1455-1465
-
-
Deininger, P.L.1
Batzer, M.A.2
-
4
-
-
0034079713
-
Human LINE retrotransposons generate processed pseudogenes
-
COI: 1:CAS:528:DC%2BD3cXisVCjsbw%3D, PID: 10742098
-
Esnault C, Maestre J, Heidmann T (2000) Human LINE retrotransposons generate processed pseudogenes. Nat Genet 24:363–367
-
(2000)
Nat Genet
, vol.24
, pp. 363-367
-
-
Esnault, C.1
Maestre, J.2
Heidmann, T.3
-
5
-
-
0035819894
-
Subfamilies of CR1 non-LTR retrotransposons have different 5′UTR sequences but are otherwise conserved
-
COI: 1:CAS:528:DC%2BD3MXhsleksbk%3D, PID: 11255020
-
Haas NB, Grabowski JM, North J, Moran JV, Kazazian HH Jr, Burch JBE (2001) Subfamilies of CR1 non-LTR retrotransposons have different 5′UTR sequences but are otherwise conserved. Gene 265:175–183. doi:10.1016/s0378-1119(01)00344-4
-
(2001)
Gene
, vol.265
, pp. 175-183
-
-
Haas, N.B.1
Grabowski, J.M.2
North, J.3
Moran, J.V.4
Kazazian, H.H.5
Burch, J.B.E.6
-
6
-
-
84867569468
-
Multiple nuclear genes and retroposons support vicariance and dispersal of the palaeognaths, and an Early Cretaceous origin of modern birds
-
PID: 22977150
-
Haddrath O, Baker AJ (2012) Multiple nuclear genes and retroposons support vicariance and dispersal of the palaeognaths, and an Early Cretaceous origin of modern birds. Proc R Soc B 279:4617–4625
-
(2012)
Proc R Soc B
, vol.279
, pp. 4617-4625
-
-
Haddrath, O.1
Baker, A.J.2
-
7
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
COI: 1:CAS:528:DC%2BD2cXhtVGmtb7M
-
Hillier LW et al (2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432:695–716. doi:10.1038/nature03154
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
Hillier, L.W.1
-
8
-
-
33845901252
-
Insertion events of CR1 retrotransposable elements elucidate the phylogenetic branching order in galliform birds
-
COI: 1:CAS:528:DC%2BD2sXnvFWltA%3D%3D, PID: 17077154
-
Kaiser VB, van Tuinen M, Ellegren H (2007) Insertion events of CR1 retrotransposable elements elucidate the phylogenetic branching order in galliform birds. Mol Biol Evol 24:338–347. doi:10.1093/molbev/msl164
-
(2007)
Mol Biol Evol
, vol.24
, pp. 338-347
-
-
Kaiser, V.B.1
van Tuinen, M.2
Ellegren, H.3
-
9
-
-
0030731154
-
Determination of the entire sequence of turtle CR1: the first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif
-
COI: 1:CAS:528:DyaK2sXnvVCrsbs%3D, PID: 9402732
-
Kajikawa M, Ohshima K, Okada N (1997) Determination of the entire sequence of turtle CR1: the first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif. Mol Biol Evol 14:1206–1217
-
(1997)
Mol Biol Evol
, vol.14
, pp. 1206-1217
-
-
Kajikawa, M.1
Ohshima, K.2
Okada, N.3
-
10
-
-
0037225253
-
The esterase and PHD domains in CR1-like non-LTR retrotransposons
-
COI: 1:CAS:528:DC%2BD3sXktlOrsg%3D%3D, PID: 12519904
-
Kapitonov VV, Jurka J (2003) The esterase and PHD domains in CR1-like non-LTR retrotransposons. Mol Biol Evol 20:38–46. doi:10.1093/molbev/msg011
-
(2003)
Mol Biol Evol
, vol.20
, pp. 38-46
-
-
Kapitonov, V.V.1
Jurka, J.2
-
11
-
-
37549035420
-
Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: galliformes)
-
PID: 17925025
-
Kriegs JO, Matzke A, Churakov G, Kuritzin A, Mayr G, Brosius J, Schmitz J (2007) Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: galliformes). BMC Evol Biol 7:190
-
(2007)
BMC Evol Biol
, vol.7
, pp. 190
-
-
Kriegs, J.O.1
Matzke, A.2
Churakov, G.3
Kuritzin, A.4
Mayr, G.5
Brosius, J.6
Schmitz, J.7
-
12
-
-
84861341358
-
CR1 retroposons provide a new insight into the phylogeny of Phasianidae species (Aves: Galliformes)
-
COI: 1:CAS:528:DC%2BC38XntVWhurs%3D, PID: 22565186
-
Liu Z, He L, Yuan H, Yue B, Li J (2012) CR1 retroposons provide a new insight into the phylogeny of Phasianidae species (Aves: Galliformes). Gene 502:125–132. doi:10.1016/j.gene.2012.04.068
-
(2012)
Gene
, vol.502
, pp. 125-132
-
-
Liu, Z.1
He, L.2
Yuan, H.3
Yue, B.4
Li, J.5
-
13
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition
-
COI: 1:CAS:528:DyaK3sXhs1ansrc%3D, PID: 7679954
-
Luan DD, Korman MH, Jakubczak JL, Eickbush TH (1993) Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72:595–605. doi:10.1016/0092-8674(93)90078-5
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
14
-
-
0029927086
-
The 3′ ends of tRNA-derived short interspersed repetitive elements are derived from the 3′ ends of long interspersed repetitive elements
-
COI: 1:CAS:528:DyaK28XjvVWnurg%3D, PID: 8668192
-
Ohshima K, Hamada M, Terai Y, Okada N (1996) The 3′ ends of tRNA-derived short interspersed repetitive elements are derived from the 3′ ends of long interspersed repetitive elements. Mol Cell Biol 16:3756–3764
-
(1996)
Mol Cell Biol
, vol.16
, pp. 3756-3764
-
-
Ohshima, K.1
Hamada, M.2
Terai, Y.3
Okada, N.4
-
15
-
-
1842452859
-
First application of the SINE (short interspersed repetitive element) method to infer phylogenetic relationships in reptiles: an example from the turtle superfamily Testudinoidea
-
COI: 1:CAS:528:DC%2BD2cXjt1egu7s%3D, PID: 15014157
-
Sasaki T, Takahashi K, Nikaido M, Miura S, Yasukawa Y, Okada N (2004) First application of the SINE (short interspersed repetitive element) method to infer phylogenetic relationships in reptiles: an example from the turtle superfamily Testudinoidea. Mol Biol Evol 21:705–715. doi:10.1093/molbev/msh069
-
(2004)
Mol Biol Evol
, vol.21
, pp. 705-715
-
-
Sasaki, T.1
Takahashi, K.2
Nikaido, M.3
Miura, S.4
Yasukawa, Y.5
Okada, N.6
-
16
-
-
33847281471
-
Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome
-
COI: 1:CAS:528:DC%2BD2sXisVSgt78%3D, PID: 17307883
-
Shedlock AM et al (2007) Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome. Proc Natl Acad Sci USA 104:2767–2772. doi:10.1073/pnas.0606204104
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 2767-2772
-
-
Shedlock, A.M.1
-
17
-
-
0024375274
-
Evidence that chicken CR1 elements represent a novel family of retroposons
-
COI: 1:CAS:528:DyaK3cXhslehu7s%3D, PID: 2477689
-
Silva R, Burch JBE (1989) Evidence that chicken CR1 elements represent a novel family of retroposons. Mol Cell Biol 9:3563–3566. doi:10.1128/mcb.9.8.3563
-
(1989)
Mol Cell Biol
, vol.9
, pp. 3563-3566
-
-
Silva, R.1
Burch, J.B.E.2
-
18
-
-
58149287716
-
Recent CR1 non-LTR retrotransposon activity in coscoroba reveals an insertion site preference
-
St. John J, Quinn TW (2008) Recent CR1 non-LTR retrotransposon activity in coscoroba reveals an insertion site preference. BMC Genom 9:567
-
(2008)
BMC Genom
, vol.9
, pp. 567
-
-
St. John, J.1
Quinn, T.W.2
-
19
-
-
84919656263
-
Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes
-
COI: 1:CAS:528:DC%2BC2MXjt1Cnu7o%3D
-
Suh A et al (2015a) Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes. Genome Biol Evol 7:205–217. doi:10.1093/gbe/evu256
-
(2015)
Genome Biol Evol
, vol.7
, pp. 205-217
-
-
Suh, A.1
-
20
-
-
80052407723
-
Retroposon insertions and the chronology of avian sex chromosome evolution
-
COI: 1:CAS:528:DC%2BC3MXhtlyqsbfM, PID: 21633113
-
Suh A, Kriegs JO, Brosius J, Schmitz J (2011a) Retroposon insertions and the chronology of avian sex chromosome evolution. Mol Biol Evol 28:2993–2997. doi:10.1093/molbev/msr147
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2993-2997
-
-
Suh, A.1
Kriegs, J.O.2
Brosius, J.3
Schmitz, J.4
-
21
-
-
80052392767
-
Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds
-
PID: 21863010
-
Suh A et al (2011b) Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds. Nat Commun 2:443. doi:10.1038/ncomms1448
-
(2011)
Nat Commun
, vol.2
, pp. 443
-
-
Suh, A.1
-
22
-
-
84863634273
-
A universal method for the study of CR1 retroposons in nonmodel bird genomes
-
COI: 1:CAS:528:DC%2BC38XhsVehtbrF, PID: 22522308
-
Suh A, Kriegs JO, Donnellan S, Brosius J, Schmitz J (2012) A universal method for the study of CR1 retroposons in nonmodel bird genomes. Mol Biol Evol 29:2899–2903. doi:10.1093/molbev/mss124
-
(2012)
Mol Biol Evol
, vol.29
, pp. 2899-2903
-
-
Suh, A.1
Kriegs, J.O.2
Donnellan, S.3
Brosius, J.4
Schmitz, J.5
-
23
-
-
84940641284
-
The dynamics of incomplete lineage sorting across the ancient adaptive radiation of neoavian birds. PLoS Biol
-
Suh A, Smeds L, Ellegren H (2015b) The dynamics of incomplete lineage sorting across the ancient adaptive radiation of neoavian birds. PLoS Biol. doi:10.1371/journal.pbio.1002224
-
(2015)
doi:10.1371/journal.pbio.1002224
-
-
Suh, A.1
Smeds, L.2
Ellegren, H.3
-
24
-
-
19944432437
-
The repetitive landscape of the chicken genome
-
PID: 15256510
-
Wicker T et al (2005) The repetitive landscape of the chicken genome. Genome Res 15:126–136
-
(2005)
Genome Res
, vol.15
, pp. 126-136
-
-
Wicker, T.1
-
25
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
COI: 1:CAS:528:DC%2BD3sXltVWisr8%3D, PID: 12824337
-
Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406–3415. doi:10.1093/nar/gkg595
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|