-
2
-
-
0344530834
-
Evolution of cultivated chickpea: Four bottlenecks limit diversity and constrain adaptation
-
Abbo, S., Berger, J. D. & Turner, N. C. Evolution of cultivated chickpea: four bottlenecks limit diversity and constrain adaptation. Funct. Plant Biol. 30, 1081-1087 (2003).
-
(2003)
Funct. Plant Biol.
, vol.30
, pp. 1081-1087
-
-
Abbo, S.1
Berger, J.D.2
Turner, N.C.3
-
3
-
-
0347664265
-
The chickpea summer cropping, and a new model for pulse domestication in the ancient near East
-
Abbo, S., Stienberg, D., Lichtenzveig, J., Lev-Yadun, S. & Gopher, A. The chickpea summer cropping, and a new model for pulse domestication in the ancient near East. Quant. Rev. Biol. 78, 435-448 (2003).
-
(2003)
Quant. Rev. Biol.
, vol.78
, pp. 435-448
-
-
Abbo, S.1
Stienberg, D.2
Lichtenzveig, J.3
Lev-Yadun, S.4
Gopher, A.5
-
5
-
-
84939162173
-
-
Faostat. Fao.org/site/567/DesktopDefault.aspx?PageID= 567anchor
-
FAOSTAT. Faostat.fao.org/site/567/DesktopDefault.aspx?PageID= 567anchor (2009).
-
(2009)
FAOSTAT
-
-
-
6
-
-
0033120603
-
Sequence-tagged microsatellite site markers for chickpea (Cicer arietinum L.)
-
Huttel, B., et al. Sequence-tagged microsatellite site markers for chickpea (Cicer arietinum L.). Genome 42, 210-217 (1999).
-
(1999)
Genome
, vol.42
, pp. 210-217
-
-
Huttel, B.1
-
7
-
-
33746751494
-
Development of microsatellite markers and analysis of intraspecific genetic variability in chickpea (Cicer arietinum L.)
-
Sethy, N. K., Shokeen, B., Edwards, K. J. & Bhatia, S. Development of microsatellite markers and analysis of intraspecific genetic variability in chickpea (Cicer arietinum L.). Theor. Appl. Genet. 112, 1416-1428 (2006
-
(2006)
Theor. Appl. Genet.
, vol.112
, pp. 1416-1428
-
-
Sethy, N.K.1
Shokeen, B.2
Edwards, K.J.3
Bhatia, S.4
-
8
-
-
84863564349
-
Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes
-
Hiremath, P. J., et al. Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnol. J. 10, 716-732 (2012).
-
(2012)
Plant Biotechnol. J.
, vol.10
, pp. 716-732
-
-
Hiremath, P.J.1
-
9
-
-
84867714759
-
High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.)
-
Gaur, R., et al. High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.). DNA Res. 19, 357-373 (2012).
-
(2012)
DNA Res.
, vol.19
, pp. 357-373
-
-
Gaur, R.1
-
11
-
-
84928034709
-
Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea
-
Kujur, A., et al. Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea. Front. Plant Sc. 6, 162 (2015).
-
(2015)
Front. Plant Sc.
, vol.6
, pp. 162
-
-
Kujur, A.1
-
12
-
-
77953129466
-
Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome
-
Nayak, S. N., et al. Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theor. Appl. Genet. 120, 1415-1441 (2010).
-
(2010)
Theor. Appl. Genet.
, vol.120
, pp. 1415-1441
-
-
Nayak, S.N.1
-
13
-
-
84904255962
-
Exploring germplasm diversity to understand the domestication process in Cicer spp. Using SNP and DArT markers
-
Rookiwal, M., et al. Exploring germplasm diversity to understand the domestication process in Cicer spp. using SNP and DArT markers. PLoS ONE 9, e102016 (2014).
-
(2014)
PLoS ONE
, vol.9
, pp. e102016
-
-
Rookiwal, M.1
-
14
-
-
84860612585
-
Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.)
-
Thudi, M., et al. Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.). PLoS ONE 6, e27275 (2011).
-
(2011)
PLoS ONE
, vol.6
, pp. e27275
-
-
Thudi, M.1
-
15
-
-
84871643573
-
Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers
-
Agarwal, G., et al. Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers. PLoS ONE 7, e52443..
-
PLoS ONE
, vol.7
, pp. e52443
-
-
Agarwal, G.1
-
16
-
-
79951828683
-
-
Garg, R., Patel, R. K., Tyagi, A. K. & Jain, M. de novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification. DNA Res. 18, 53-63 (2011).
-
(2011)
DNA Res.
, vol.18
, pp. 53-63
-
-
Garg, R.1
Patel, R.K.2
Tyagi, A.K.3
Jain, M.4
-
17
-
-
84863567245
-
Transcriptome sequencing of wild chickpea as a rich resource for marker development
-
Jhanwar, S., et al. Transcriptome sequencing of wild chickpea as a rich resource for marker development. Plant Biotechnol. J. 10, 690-702 (2012).
-
(2012)
Plant Biotechnol. J.
, vol.10
, pp. 690-702
-
-
Jhanwar, S.1
-
18
-
-
84898058216
-
Comprehensive transcriptome assembly of Chickpea (Cicer arietinum L.) using sanger and next generation sequencing platforms: Development and applications
-
Kudapa, H., et al. Comprehensive transcriptome assembly of Chickpea (Cicer arietinum L.) using sanger and next generation sequencing platforms: development and applications. PLoS ONE 9, e86039 (2014).
-
(2014)
PLoS ONE
, vol.9
, pp. e86039
-
-
Kudapa, H.1
-
19
-
-
84979730194
-
Genome-based analysis of the transcriptome from mature chickpea root nodules
-
Afonso-Grunz, F., et al. Genome-based analysis of the transcriptome from mature chickpea root nodules. Front Plant Sci. 5, 325 (2014).
-
(2014)
Front Plant Sci.
, vol.5
, pp. 325
-
-
Afonso-Grunz, F.1
-
20
-
-
79961197602
-
Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development
-
Garg, R., et al. Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development. Plant Physiol. 156, 1661-1678 (2012).
-
(2012)
Plant Physiol.
, vol.156
, pp. 1661-1678
-
-
Garg, R.1
-
21
-
-
71049166845
-
A comprehensive resource of drought- and salinity-responsive EST for gene discovery and marker development in chickpea (Cicer arietinum L.)
-
Varshney, R. K., et al. A comprehensive resource of drought- and salinity-responsive EST for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics 10: 523 (2009).
-
(2009)
BMC Genomics
, vol.10
, pp. 523
-
-
Varshney, R.K.1
-
22
-
-
84880976034
-
A global view of transcriptome dynamics during flower development in chickpea by deep sequencing
-
Singh, V. K., Garg, R. & Jain, M. A global view of transcriptome dynamics during flower development in chickpea by deep sequencing. Plant Biotechnol. J. 11, 691-701 (2013).
-
(2013)
Plant Biotechnol. J.
, vol.11
, pp. 691-701
-
-
Singh, V.K.1
Garg, R.2
Jain, M.3
-
23
-
-
84925456875
-
A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea
-
Bajaj, D., et al. A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea. Sci. Rep. 5, 9264 (2015).
-
(2015)
Sci. Rep.
, vol.5
, pp. 9264
-
-
Bajaj, D.1
-
24
-
-
84884190218
-
Functionally relevant microsatellite markers from chickpea transcription factor genes for efficient genotyping applications and trait association mapping
-
Kujur, A., et al. Functionally relevant microsatellite markers from chickpea transcription factor genes for efficient genotyping applications and trait association mapping. DNA Res. 20, 355-374 (2013).
-
(2013)
DNA Res.
, vol.20
, pp. 355-374
-
-
Kujur, A.1
-
25
-
-
84913593601
-
Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing
-
Jain, M., Chevala, V. V. & Garg, R. Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing. J. Exp. Bot. 65, 5945-5958 (2014).
-
(2014)
J. Exp. Bot.
, vol.65
, pp. 5945-5958
-
-
Jain, M.1
Chevala, V.V.2
Garg, R.3
-
26
-
-
84907781660
-
Identification and characterization of wilt and salt stress-responsive microRNAs in chickpea through highthroughput sequencing
-
Kohil, D., et al. Identification and characterization of wilt and salt stress-responsive microRNAs in chickpea through highthroughput sequencing. PLoS ONE 9, e108851 (2014).
-
(2014)
PLoS ONE
, vol.9
, pp. e108851
-
-
Kohil, D.1
-
27
-
-
84878341271
-
A draft genome sequence of the pulse crop chickpea (Cicer arientinum L.)
-
Jain, M., et al. A draft genome sequence of the pulse crop chickpea (Cicer arientinum L.). Plant J. 74, 715-729 (2013).
-
(2013)
Plant J.
, vol.74
, pp. 715-729
-
-
Jain, M.1
-
28
-
-
84875176954
-
Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
-
Varshney, R. K., et al. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat. Biotechnol. 31, 240-246 (2013).
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 240-246
-
-
Varshney, R.K.1
-
29
-
-
84922450139
-
An integrated genomic approach for rapid delineation of candidate genes regulating agro-morphological traits in chickpea
-
Saxena, M. S., et al. An integrated genomic approach for rapid delineation of candidate genes regulating agro-morphological traits in chickpea. DNA Res. 21, 695-670.
-
DNA Res.
, vol.21
, pp. 695-670
-
-
Saxena, M.S.1
-
30
-
-
84900397393
-
Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches
-
Thudi, M., et al. Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches. PLoS ONE 9, e96758 (2014).
-
(2014)
PLoS ONE
, vol.9
, pp. e96758
-
-
Thudi, M.1
-
31
-
-
84942887758
-
SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler
-
Luo, R., et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1, 18 (2012).
-
(2012)
Gigascience
, vol.1
, pp. 18
-
-
Luo, R.1
-
32
-
-
34249848751
-
CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes
-
Parra, G., Bradnam, K. & Korf, I. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23, 1061-1067 (2007).
-
(2007)
Bioinformatics
, vol.23
, pp. 1061-1067
-
-
Parra, G.1
Bradnam, K.2
Korf, I.3
-
33
-
-
74549221016
-
Genome sequence of the paleopolyploid soybean
-
Schmutz, J., et al. Genome sequence of the paleopolyploid soybean. Nature 463, 178-180 (2010).
-
(2010)
Nature
, vol.463
, pp. 178-180
-
-
Schmutz, J.1
-
34
-
-
84903517143
-
A reference genome for common bean and genome-wide analysis of dual domestication
-
Schmutz, J., et al. A reference genome for common bean and genome-wide analysis of dual domestication. Nature Genet. 46, 707-713 (2014).
-
(2014)
Nature Genet.
, vol.46
, pp. 707-713
-
-
Schmutz, J.1
-
35
-
-
84904734147
-
A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies
-
Ruperao, P., et al. A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnol. J. 12, 778-768 (2014).
-
(2014)
Plant Biotechnol. J.
, vol.12
, pp. 778-768
-
-
Ruperao, P.1
-
36
-
-
77953129466
-
Integration of novel SSR and gene-based SNP maeker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome
-
Nayak, S. N., et al. Integration of novel SSR and gene-based SNP maeker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theor. Appl. Genet. 120, 1415-1441 (2010).
-
(2010)
Theor. Appl. Genet.
, vol.120
, pp. 1415-1441
-
-
Nayak, S.N.1
-
37
-
-
84891810676
-
PlantTFDB 3.0: A portal for the functional and evolutionary study of plant transcription factors
-
Jin, J. P., Zhang, H., Kong, L., Gao, G. & Luo, J. C. PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. Nucleic Acids Res. 42(D1), D1182-D1187 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42 D
, Issue.1
, pp. D1182-D1187
-
-
Jin, J.P.1
Zhang, H.2
Kong, L.3
Gao, G.4
Luo, J.C.5
-
38
-
-
84921402234
-
Genome sequence of mungbean and insights into evolution within Vigna species
-
Kang, Y.J., et al. Genome sequence of mungbean and insights into evolution within Vigna species. Nat. Commun. 5, 5443 (2014).
-
(2014)
Nat. Commun.
, vol.5
, pp. 5443
-
-
Kang, Y.J.1
-
39
-
-
84933684027
-
Draft genome sequence of adzuki bean, Vigna angularis
-
Kang, Y. J., et al. Draft genome sequence of adzuki bean, Vigna angularis. Scientific Rep. 5, 8069 (2015).
-
(2015)
Scientific Rep.
, vol.5
, pp. 8069
-
-
Kang, Y.J.1
-
40
-
-
84939887963
-
Genome-scale transcriptomic insights into molecular aspects of abiotic stress responses in chickpea
-
Garg, R., Bhattacharjee, A. & Jain, M. Genome-scale transcriptomic insights into molecular aspects of abiotic stress responses in chickpea. Plant Mol. Biol. Rep. doi: 10.1007/s11105-014-0753-x (2014).
-
(2014)
Plant Mol. Biol. Rep.
-
-
Garg, R.1
Bhattacharjee, A.2
Jain, M.3
-
41
-
-
75549092353
-
PRGdb: A bioinformatics platform for plant resistance gene analysis
-
Sanseverino, W., et al. PRGdb: a bioinformatics platform for plant resistance gene analysis. Nucleic Acids Res. 38, D814-D821 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. D814-D821
-
-
Sanseverino, W.1
-
42
-
-
58149203231
-
InterPro: The integrative protein signature database
-
Hunter, S., et al. InterPro: the integrative protein signature database. Nucleic Acid Res. 37, D211-215 (2009).
-
(2009)
Nucleic Acid Res.
, vol.37
, pp. D211-215
-
-
Hunter, S.1
-
43
-
-
84941042486
-
CDD: NCBIs conserved domain database
-
Marchler-Bauer, A., et al. CDD: NCBIs conserved domain database. Nucleic Acids. Res. 43, D222-226 (2015).
-
(2015)
Nucleic Acids. Res.
, vol.43
, pp. D222-226
-
-
Marchler-Bauer, A.1
-
44
-
-
84355166513
-
The Medicago genome provides insight into the evolution of rhizobial symbioses
-
Young, N., et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature 480, 520-524 (2011).
-
(2011)
Nature
, vol.480
, pp. 520-524
-
-
Young, N.1
-
45
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
Feschotte, C. & Pritham, E. J. DNA transposons and the evolution of eukaryotic genomes. Annu. Rev. Genet. 41, 331-368 (2007).
-
(2007)
Annu. Rev. Genet.
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.J.2
-
46
-
-
0037353424
-
The ATP-Binding cassette transporters: Structure, function, and gene family comparison between rice and Arabidopsis
-
Jasinski, M., Ducos, E., Martinoia, E. & Boutry, M. The ATP-Binding cassette transporters: structure, function, and gene family comparison between rice and Arabidopsis. Plant Physiol. 131, 1169-1177 (2003).
-
(2003)
Plant Physiol.
, vol.131
, pp. 1169-1177
-
-
Jasinski, M.1
Ducos, E.2
Martinoia, E.3
Boutry, M.4
-
47
-
-
22844439628
-
Placing paleoploidy in relation to taxon divergence: A phylogenetic analysis in legumes using 39 gene families
-
Pfeil, B. E., Schlueter, J. A., Shoemaker, R. C. & Doyle, J. J. Placing paleoploidy in relation to taxon divergence: A phylogenetic analysis in legumes using 39 gene families. Syst. Biol. 54, 441-454 (2005).
-
(2005)
Syst. Biol.
, vol.54
, pp. 441-454
-
-
Pfeil, B.E.1
Schlueter, J.A.2
Shoemaker, R.C.3
Doyle, J.J.4
-
48
-
-
0012537480
-
Variation in Cicer arietinum L
-
Moreno, M. T. & Cubero, C. I. Variation in Cicer arietinum L. Euphytica 27, 465-485 (1978).
-
(1978)
Euphytica
, vol.27
, pp. 465-485
-
-
Moreno, M.T.1
Cubero, C.I.2
-
49
-
-
84907043505
-
Genome wide SNP identification in chickpea for use in development of a high-density genetic map and improvement of chickpea reference genome assembly
-
Deokar, A. A., et al. Genome wide SNP identification in chickpea for use in development of a high-density genetic map and improvement of chickpea reference genome assembly. BMC Genomics 15, 708 (2014).
-
(2014)
BMC Genomics
, vol.15
, pp. 708
-
-
Deokar, A.A.1
-
50
-
-
84898058782
-
Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.)
-
Varshney, R. K., et al. Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.). Funct. Integr. Genomics 14, 59-73 (2014).
-
(2014)
Funct. Integr. Genomics
, vol.14
, pp. 59-73
-
-
Varshney, R.K.1
-
51
-
-
84856468953
-
NGS QC Toolkit: A toolkit for quality control of next generation sequencing data
-
Patel, R. K. & Jain, M. NGS QC Toolkit: A toolkit for quality control of next generation sequencing data. PLoS ONE 7, e30619 (2012).
-
(2012)
PLoS ONE
, vol.7
, pp. e30619
-
-
Patel, R.K.1
Jain, M.2
-
52
-
-
84860513986
-
PILER: Identification and classification of genomic repeats
-
Edgar, R. C. & Myres, E. W. PILER: identification and classification of genomic repeats. Bioinformatics 21 (Suppl), i152-i158 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. i152-i158
-
-
Edgar, R.C.1
Myres, E.W.2
-
53
-
-
29144455282
-
-
Price, A.L., Jones, N.C. & Pevzner, P.A. de novo identification of repeat families in large genomes. Bioinformatics 21 (Suppl), i351-i358 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. i351-i358
-
-
Price, A.L.1
Jones, N.C.2
Pevzner, P.A.3
-
54
-
-
34547592867
-
LTR-FINDER: An efficient tool for the prediction of full- length LTR retrotransposons
-
2007
-
Xu, Z. & Wang, H. (2007) LTR-FINDER: an efficient tool for the prediction of full- length LTR retrotransposons. Nucleic Acids Res. 35, W265-W268 (2007).
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W265-W268
-
-
Xu, Z.1
Wang, H.2
-
55
-
-
43349107538
-
Using RepeatMasker to identify repetitive elements in genomic sequences
-
4.10.1-4.10.14
-
Chen, N. Using RepeatMasker to identify repetitive elements in genomic sequences. Curr. Protoc. Bioinformatics 25, 4.10.1-4.10.14 (2004).
-
(2004)
Curr. Protoc. Bioinformatics
, vol.25
-
-
Chen, N.1
-
56
-
-
2942527473
-
Gene prediction with a hidden Markov model and a new intron submodel
-
Stanke, M. & Waack, S. Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics 19 (Suppl), ii215-ii225 (2003).
-
(2003)
Bioinformatics
, vol.19
, pp. ii215-ii225
-
-
Stanke, M.1
Waack, S.2
-
57
-
-
0034065724
-
Ab initio gene finding in Drosophila genomic DNA
-
Salamov, A. A. & Solovyev, V. V. Ab initio gene finding in Drosophila genomic DNA. Genome Res. 10, 516-522 (2000).
-
(2000)
Genome Res.
, Issue.10
, pp. 516-522
-
-
Salamov, A.A.1
Solovyev, V.V.2
-
58
-
-
33846573830
-
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
-
Campbell, M.A., et al. Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis. BMC Genomics 7, 327 (2006).
-
(2006)
BMC Genomics
, vol.7
, pp. 327
-
-
Campbell, M.A.1
-
59
-
-
42949086676
-
Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
-
Haas, B. J., et al. Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments. Genome Biol. 9 (R7), (2008).
-
(2008)
Genome Biol.
, vol.9
, pp. R7
-
-
Haas, B.J.1
-
60
-
-
24644503098
-
Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
-
Conesa, A., et al. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21, 3674-3676 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
-
61
-
-
79961194036
-
SyMAP v3.4: A turnkey synteny system with application to plant genomes
-
Soderlund, C., Bomhoff, M. & Nelson, W. M. SyMAP v3.4: a turnkey synteny system with application to plant genomes. Nucleic Acids Res. 39, e68 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. e68
-
-
Soderlund, C.1
Bomhoff, M.2
Nelson, W.M.3
-
62
-
-
84860137835
-
MCScanX: A toolkit for detection and evolutionary analysis of gene synteny and colineraity
-
Wang, Y., et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and colineraity. Nucleic Acids Res. 40, e49 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. e49
-
-
Wang, Y.1
-
63
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna, R., et al. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31, 3497-3500 (2003).
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
-
64
-
-
33747847779
-
PAL2NAL: Robust conversion of protein sequencing alignments into the corresponding codon alignments
-
Suyama, M., Torrents, D., & Bork, P. PAL2NAL: robust conversion of protein sequencing alignments into the corresponding codon alignments. Nucleic Acids Res. 34, W609-612 (2006).
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. W609-612
-
-
Suyama, M.1
Torrents, D.2
Bork, P.3
-
65
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang, Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24, 1586-1591 (2007).
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
66
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch, M. & Conery, J. S. The evolutionary fate and consequences of duplicate genes. Science 290, 1151-1155 (2000).
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
67
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
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