메뉴 건너뛰기




Volumn 27, Issue 22, 2011, Pages 3186-3192

ISPyB: An information management system for synchrotron macromolecular crystallography

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 80755169533     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr535     Document Type: Article
Times cited : (131)

References (31)
  • 1
    • 80755139240 scopus 로고    scopus 로고
    • Portal design, Synchrotron and HPC services in e-HTPX - A resource for High Throughput Protein Crystallography
    • Cox,S.J andWalker,D.W. (eds), ISBN 1-904425-53-4
    • Allan,R.J. et al. (2005) Portal design, Synchrotron and HPC services in e-HTPX - A resource for High Throughput Protein Crystallography. In Cox,S.J andWalker,D.W. (eds) Proceedings of the UK e-Science All Hands Meeting 2005, ISBN 1-904425-53-4.
    • (2005) Proceedings of the UK e-Science All Hands Meeting 2005
    • Allan, R.J.1
  • 2
    • 30344461908 scopus 로고    scopus 로고
    • Managing and mining protein crystallization data
    • Amin,A.A. et al. (2006) Managing and mining protein crystallization data. Proteins, 62, 4-7.
    • (2006) Proteins , vol.62 , pp. 4-7
    • Amin, A.A.1
  • 3
    • 21144431525 scopus 로고    scopus 로고
    • Automation of macromolecular crystallography beamlines
    • Arzt,S. et al. (2005) Automation of macromolecular crystallography beamlines. Prog. Biophys. Mol. Biol., 89, 124-152.
    • (2005) Prog. Biophys. Mol. Biol. , vol.89 , pp. 124-152
    • Arzt, S.1
  • 4
    • 0033954256 scopus 로고    scopus 로고
    • The Protein Data Bank
    • Berman,H.M. et al. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
    • (2000) Nucleic Acids Res , vol.28 , pp. 235-242
    • Berman, H.M.1
  • 5
    • 33749523027 scopus 로고    scopus 로고
    • High-throughput sample handling and data collection at synchrotrons: embedding the ESRF into the high-throughput gene-to-structure pipeline
    • Beteva,A. et al. (2006) High-throughput sample handling and data collection at synchrotrons: embedding the ESRF into the high-throughput gene-to-structure pipeline. Acta Crystallogr. D Biol. Crystallogr., D62, 1162-1169.
    • (2006) Acta Crystallogr. D Biol. Crystallogr. , vol.D62 , pp. 1162-1169
    • Beteva, A.1
  • 6
    • 77950841368 scopus 로고    scopus 로고
    • Optimization of data collection taking radiation damage into account
    • Bourenkov,G.P. and Popov,A.N. (2010) Optimization of data collection taking radiation damage into account. Acta Crystallogr. D Biol. Crystallogr., D66, 409-419
    • (2010) Acta Crystallogr. D Biol. Crystallogr. , vol.D66 , pp. 409-419
    • Bourenkov, G.P.1    Popov, A.N.2
  • 7
    • 77955455725 scopus 로고    scopus 로고
    • Diffraction cartography: applying microbeams to macromolecular crystallography sample evaluation and data collection
    • Bowler,M.W. et al. (2010) Diffraction cartography: applying microbeams to macromolecular crystallography sample evaluation and data collection. Acta Crystallogr. D Biol. Crystallogr., D66, 855-864.
    • (2010) Acta Crystallogr. D Biol. Crystallogr. , vol.D66 , pp. 855-864
    • Bowler, M.W.1
  • 8
    • 33749524638 scopus 로고    scopus 로고
    • Automation of sample mounting for macromolecular crystallography
    • Cipriani,F. et al. (2006). Automation of sample mounting for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr., D62, 1251-1259.
    • (2006) Acta Crystallogr. D Biol. Crystallogr. , vol.D62 , pp. 1251-1259
    • Cipriani, F.1
  • 9
    • 0036896410 scopus 로고    scopus 로고
    • An automated system to mount cryo-cooled protein crystals on a synchrotron beamline, using compact sample cassettes and a small-scale robot
    • Cohen,A.E. et al. (2002). An automated system to mount cryo-cooled protein crystals on a synchrotron beamline, using compact sample cassettes and a small-scale robot. J. Appl. Cryst., 35, 720-726.
    • (2002) J. Appl. Cryst. , vol.35 , pp. 720-726
    • Cohen, A.E.1
  • 10
    • 33746466679 scopus 로고    scopus 로고
    • Advanced beamline automation for biological crystallography experiments
    • Cork,C. et al. (2006). Advanced beamline automation for biological crystallography experiments. Acta Crystallogr. D Biol. Crystallogr., D62, 852-858.
    • (2006) Acta Crystallogr. D Biol. Crystallogr. , vol.D62 , pp. 852-858
    • Cork, C.1
  • 11
    • 79959967375 scopus 로고    scopus 로고
    • xtalPiMS: A PiMS-based web application for the management and monitoring of crystallization trials
    • Daniel,E. et al. (2011) xtalPiMS: A PiMS-based web application for the management and monitoring of crystallization trials. J. Struct. Biol., 175, 230-235.
    • (2011) J. Struct. Biol. , vol.175 , pp. 230-235
    • Daniel, E.1
  • 12
    • 69949182490 scopus 로고    scopus 로고
    • Cyclic olefin homopolymer-based microfluidics for protein crystallization and in situ X-ray diffraction
    • Emamzadah,S. et al. (2009) Cyclic olefin homopolymer-based microfluidics for protein crystallization and in situ X-ray diffraction. Acta Crystallogr. D Biol. Crystallogr., D65, 913-920.
    • (2009) Acta Crystallogr. D Biol. Crystallogr. , vol.D65 , pp. 913-920
    • Emamzadah, S.1
  • 13
    • 0035121475 scopus 로고    scopus 로고
    • CHOOCH: a program for deriving anomalousscattering factors from X-ray fluorescence spectra
    • Evans,G. and Pettifer,R.F. (2001) CHOOCH: a program for deriving anomalousscattering factors from X-ray fluorescence spectra. J. Appl. Cryst., 34, 82-86.
    • (2001) J. Appl. Cryst. , vol.34 , pp. 82-86
    • Evans, G.1    Pettifer, R.F.2
  • 14
    • 16644403358 scopus 로고    scopus 로고
    • CLIMS: Crystallography Laboratory Information Management System
    • Fulton,K. et al. (2004) CLIMS: Crystallography Laboratory Information Management System. Acta Crystallogr. D Biol. Crystallogr., D60, 1691-1693.
    • (2004) Acta Crystallogr. D Biol. Crystallogr. , vol.D60 , pp. 1691-1693
    • Fulton, K.1
  • 15
    • 77955462798 scopus 로고    scopus 로고
    • MxCuBE: a synchrotron beamline control environment customized for macromolecular crystallography experiments
    • Gabadinho,J. et al. (2010) MxCuBE: a synchrotron beamline control environment customized for macromolecular crystallography experiments. J. Synchrotron Radiat. 17, 700-707.
    • (2010) J. Synchrotron Radiat. , vol.17 , pp. 700-707
    • Gabadinho, J.1
  • 16
    • 38349191634 scopus 로고    scopus 로고
    • Web-Ice: integrated data collection and analysis for macromolecular crystallography
    • Gonzalez,A. et al. (2008) Web-Ice: integrated data collection and analysis for macromolecular crystallography. J. Appl. Cryst. 41, 176-184.
    • (2008) J. Appl. Cryst. , vol.41 , pp. 176-184
    • Gonzalez, A.1
  • 18
    • 42449148774 scopus 로고    scopus 로고
    • High-throughput operation of sample-exchange robots with double tongs at the Photon Factory beamlines
    • Hiraki,M. et al. (2008) High-throughput operation of sample-exchange robots with double tongs at the Photon Factory beamlines. J. Synchrotron Radiat. 15, 300-303.
    • (2008) J. Synchrotron Radiat. , vol.15 , pp. 300-303
    • Hiraki, M.1
  • 19
    • 70350325430 scopus 로고    scopus 로고
    • EDNA: a framework for plugin-based applications applied to X-ray experiment online data analysis
    • Incardona,M.-F. et al. (2009) EDNA: a framework for plugin-based applications applied to X-ray experiment online data analysis. J. Synchrotron. Radiat. 16, 872-879.
    • (2009) J. Synchrotron. Radiat. , vol.16 , pp. 872-879
    • Incardona, M.-F.1
  • 20
    • 3142526377 scopus 로고    scopus 로고
    • AutomatedAnalysis ofVapor Diffusion Crystallization Drops with an X-Ray Beam
    • Jacquamet,L. et al. (2004)AutomatedAnalysis ofVapor Diffusion Crystallization Drops with an X-Ray Beam. Structure, 12, 1219-1225
    • (2004) Structure , vol.12 , pp. 1219-1225
    • Jacquamet, L.1
  • 21
    • 57849154913 scopus 로고    scopus 로고
    • Upgrade of the CATS sample changer on FIP-BM30A at the ESRF: towards a commercialized standard
    • Jacquamet,L. et al. (2009) Upgrade of the CATS sample changer on FIP-BM30A at the ESRF: towards a commercialized standard. J. Synchrotron Radiat. 16, 14-21.
    • (2009) J. Synchrotron Radiat. , vol.16 , pp. 14-21
    • Jacquamet, L.1
  • 22
    • 62649170686 scopus 로고    scopus 로고
    • Online collection and analysis of X-ray fluorescence spectra on the macromolecular crystallography beamlines of the ESRF
    • Leonard,G.A. et al. (2009) Online collection and analysis of X-ray fluorescence spectra on the macromolecular crystallography beamlines of the ESRF. J. Appl. Cryst. 42, 333-335.
    • (2009) J. Appl. Cryst. , vol.42 , pp. 333-335
    • Leonard, G.A.1
  • 23
    • 14244270510 scopus 로고    scopus 로고
    • Automation of the collection and processing of X-ray diffraction data - a generic approach
    • Leslie,A.G.W. et al. (2002) Automation of the collection and processing of X-ray diffraction data - a generic approach. Acta Crystallogr. D Biol. Crystallogr., D58, 1924-1928.
    • (2002) Acta Crystallogr. D Biol. Crystallogr. , vol.D58 , pp. 1924-1928
    • Leslie, A.G.W.1
  • 24
    • 0036849859 scopus 로고    scopus 로고
    • Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines
    • McPhillips,T.M. et al. (2002) Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines. J. Synchrotron. Radiat. 9, 401-406.
    • (2002) J. Synchrotron. Radiat. , vol.9 , pp. 401-406
    • McPhillips, T.M.1
  • 25
    • 79953737372 scopus 로고    scopus 로고
    • The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory
    • Morris,C. et al. (2011) The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory. Acta Crystallogr. D Biol. Crystallogr., D67, 249-260.
    • (2011) Acta Crystallogr. D Biol. Crystallogr. , vol.D67 , pp. 249-260
    • Morris, C.1
  • 26
    • 77955982439 scopus 로고    scopus 로고
    • Structural biology in fragment-based drug design
    • Murray,C.W. and Blundell,T.L (2010) Structural biology in fragment-based drug design. Curr. Opin. Struct. Biol., 20, 497-507.
    • (2010) Curr. Opin. Struct. Biol. , vol.20 , pp. 497-507
    • Murray, C.W.1    Blundell, T.L.2
  • 27
    • 19944428416 scopus 로고    scopus 로고
    • Design of a data model for developing laboratory information management and analysis systems for protein production
    • Pajon,A. et al. (2005) Design of a data model for developing laboratory information management and analysis systems for protein production. Proteins, 58, 278-284.
    • (2005) Proteins , vol.58 , pp. 278-284
    • Pajon, A.1
  • 28
    • 23844487144 scopus 로고    scopus 로고
    • HalX: an open-source LIMS (Laboratory Information Management System) for small- to large-scale laboratories
    • Prilusky,J. et al. (2005) HalX: an open-source LIMS (Laboratory Information Management System) for small- to large-scale laboratories. Acta Crystallogr. D Biol. Crystallogr., D61, 671-678.
    • (2005) Acta Crystallogr. D Biol. Crystallogr. , vol.D61 , pp. 671-678
    • Prilusky, J.1
  • 29
    • 33750299158 scopus 로고    scopus 로고
    • Integrated software for macromolecular crystallography synchrotron beamlines II: revision, robots and a database
    • Skinner,J.M. et al. (2006) Integrated software for macromolecular crystallography synchrotron beamlines II: revision, robots and a database. Acta Crystallogr. D Biol. Crystallogr., D62, 1340-1347.
    • (2006) Acta Crystallogr. D Biol. Crystallogr. , vol.D62 , pp. 1340-1347
    • Skinner, J.M.1
  • 30
    • 11144357937 scopus 로고    scopus 로고
    • Automated sample mounting and alignment system for biological crystallography at a synchrotron source
    • Snell,G. et al. (2004) Automated sample mounting and alignment system for biological crystallography at a synchrotron source. Structure, 12, 537-545.
    • (2004) Structure , vol.12 , pp. 537-545
    • Snell, G.1
  • 31
    • 75649151032 scopus 로고    scopus 로고
    • xia2: an expert system for macromolecular crystallography data reduction
    • Winter,G. (2010) xia2: an expert system for macromolecular crystallography data reduction. J. Appl. Cryst. 43, 186-190.
    • (2010) J. Appl. Cryst. , vol.43 , pp. 186-190
    • Winter, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.