메뉴 건너뛰기




Volumn 16, Issue 1, 2015, Pages

Deep sequencing of the Mexican avocado transcriptome, an ancient angiosperm with a high content of fatty acids

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; TRANSCRIPTOME; PLANT PROTEIN;

EID: 84938839380     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-1775-y     Document Type: Article
Times cited : (49)

References (95)
  • 1
    • 0000819393 scopus 로고
    • Lauraceae
    • Kubitzki KRJ, Bittrich V, editors. Berlin: Springer-Verlag
    • Rohwer JC. Lauraceae. In: Kubitzki KRJ, Bittrich V, editors. The families and genera of flowering plants vol. 2. Berlin: Springer-Verlag; 1993. p. 366-91.
    • (1993) The families and genera of flowering plants , vol.2 , pp. 366-391
    • Rohwer, J.C.1
  • 3
    • 34547221583 scopus 로고    scopus 로고
    • The avocado: botany, production, and uses
    • 2nd ed. Wallingford, UK: CAB International
    • Schaffer B, Wolstenholme BN, Whiley AW. The avocado: botany, production, and uses. 2nd ed. Wallingford, UK: CAB International; 2013.
    • (2013)
    • Schaffer, B.1    Wolstenholme, B.N.2    Whiley, A.W.3
  • 4
    • 33847382077 scopus 로고    scopus 로고
    • Taxonomy and botany
    • Whiley AW, Schaffer B, Wolstenholme BN, editors. Wallingford, UK: CAB International
    • Scora RW, Wolstenholme BN, Lavi U. Taxonomy and botany. In: Whiley AW, Schaffer B, Wolstenholme BN, editors. The avocado: botany, production and uses. Wallingford, UK: CAB International; 2002. p. 15-37.
    • (2002) The avocado: botany, production and uses , pp. 15-37
    • Scora, R.W.1    Wolstenholme, B.N.2    Lavi, U.3
  • 5
    • 0003830770 scopus 로고    scopus 로고
    • The ghosts of evolution: nonsensical fruit, missing partners, and other ecological anachronisms
    • New York, NY: Basic Books
    • Barlow CC. The ghosts of evolution: nonsensical fruit, missing partners, and other ecological anachronisms. New York, NY: Basic Books; 2000.
    • (2000)
    • Barlow, C.C.1
  • 6
    • 0242313019 scopus 로고    scopus 로고
    • History, distribution and uses
    • Whiley AW, Schaffer B, Wolstenholme BN, editors. Wallingford, UK: CAB International
    • Knight RJ. History, distribution and uses. In: Whiley AW, Schaffer B, Wolstenholme BN, editors. The avocado: botany, production and uses. Wallingford, UK: CAB International; 2002. p. 1-14.
    • (2002) The avocado: botany, production and uses , pp. 1-14
    • Knight, R.J.1
  • 7
    • 1042277783 scopus 로고    scopus 로고
    • Changes in dry matter, oil content and fatty acids composition of avocado during harvesting time and post-harvesting ripening period
    • Ozdemir F, Topuz A. Changes in dry matter, oil content and fatty acids composition of avocado during harvesting time and post-harvesting ripening period. Food Chem. 2004;86(1):79-83.
    • (2004) Food Chem , vol.86 , Issue.1 , pp. 79-83
    • Ozdemir, F.1    Topuz, A.2
  • 8
    • 1042283976 scopus 로고
    • Paramètres de détermination de la maturité des avocats
    • Martinez Nieto L, Moreno Romero MV. Paramètres de détermination de la maturité des avocats. Ind Aliment Agric. 1995;112(4):200-3.
    • (1995) Ind Aliment Agric , vol.112 , Issue.4 , pp. 200-203
    • Martinez Nieto, L.1    Moreno Romero, M.V.2
  • 9
    • 0001498157 scopus 로고
    • The origins and taxonomy of avocado (Persea americana) Mill. Lauraceae
    • Scora RW, Bergh B. The origins and taxonomy of avocado (Persea americana) Mill. Lauraceae. Acta Horticulturae (ISHS). 1990;275:387-94.
    • (1990) Acta Horticulturae (ISHS) , vol.275 , pp. 387-394
    • Scora, R.W.1    Bergh, B.2
  • 10
    • 17144419364 scopus 로고    scopus 로고
    • Essential oils of Persea subgenus Persea (Lauraceae)
    • Scora RW, Scora PE. Essential oils of Persea subgenus Persea (Lauraceae). J Essent Oil Res. 2000;12(6):709-13.
    • (2000) J Essent Oil Res , vol.12 , Issue.6 , pp. 709-713
    • Scora, R.W.1    Scora, P.E.2
  • 12
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotech. 2011;29(7):644-52.
    • (2011) Nat Biotech , vol.29 , Issue.7 , pp. 644-652
    • Grabherr, M.G.1    Haas, B.J.2    Yassour, M.3    Levin, J.Z.4    Thompson, D.A.5    Amit, I.6
  • 13
    • 84895772505 scopus 로고    scopus 로고
    • De novo sequencing, assembly, and analysis of the root transcriptome of Persea americana (Mill.) in response to Phytophthora cinnamomi and flooding
    • Reeksting BJ, Coetzer N, Mahomed W, Engelbrecht J, van den Berg N. De novo sequencing, assembly, and analysis of the root transcriptome of Persea americana (Mill.) in response to Phytophthora cinnamomi and flooding. PLoS One. 2014;9(2):e86399.
    • (2014) PLoS One , vol.9 , Issue.2 , pp. e86399
    • Reeksting, B.J.1    Coetzer, N.2    Mahomed, W.3    Engelbrecht, J.4    Berg, N.5
  • 14
    • 69449099392 scopus 로고    scopus 로고
    • Comparison of next generation sequencing technologies for transcriptome characterization
    • Wall PK, Leebens-Mack J, Chanderbali A, Barakat A, Wolcott E, Liang H, et al. Comparison of next generation sequencing technologies for transcriptome characterization. BMC Genomics. 2009;10(1):347.
    • (2009) BMC Genomics , vol.10 , Issue.1 , pp. 347
    • Wall, P.K.1    Leebens-Mack, J.2    Chanderbali, A.3    Barakat, A.4    Wolcott, E.5    Liang, H.6
  • 15
    • 0001529791 scopus 로고
    • Changes in 1-aminocyclopropane-1-carboxylic acid content in ripening fruits in relation to their ethylene production rates
    • Hoffman NE, Yang SF. Changes in 1-aminocyclopropane-1-carboxylic acid content in ripening fruits in relation to their ethylene production rates. J Am Soc Hortic Sci. 1980;105(4):492-5.
    • (1980) J Am Soc Hortic Sci , vol.105 , Issue.4 , pp. 492-495
    • Hoffman, N.E.1    Yang, S.F.2
  • 16
    • 3042615882 scopus 로고    scopus 로고
    • Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs
    • Chevreux B, Pfisterer T, Drescher B, Driesel AJ, Müller WEG, Wetter T, et al. Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res. 2004;14(6):1147-59.
    • (2004) Genome Res , vol.14 , Issue.6 , pp. 1147-1159
    • Chevreux, B.1    Pfisterer, T.2    Drescher, B.3    Driesel, A.J.4    Müller, W.E.G.5    Wetter, T.6
  • 17
    • 79955769112 scopus 로고    scopus 로고
    • Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing
    • Franssen S, Shrestha R, Brautigam A, Bornberg-Bauer E, Weber A. Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing. BMC Genomics. 2011;12(1):227.
    • (2011) BMC Genomics , vol.12 , Issue.1 , pp. 227
    • Franssen, S.1    Shrestha, R.2    Brautigam, A.3    Bornberg-Bauer, E.4    Weber, A.5
  • 18
    • 84900302430 scopus 로고    scopus 로고
    • Characterization of mango (Mangifera indica L.) transcriptome and chloroplast genome
    • Azim MK, Khan IA, Zhang Y. Characterization of mango (Mangifera indica L.) transcriptome and chloroplast genome. Plant Mol Biol. 2014;85(1-2):193-208.
    • (2014) Plant Mol Biol , vol.85 , Issue.1-2 , pp. 193-208
    • Azim, M.K.1    Khan, I.A.2    Zhang, Y.3
  • 19
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: a DNA sequence assembly program
    • Huang X, Madan A. CAP3: a DNA sequence assembly program. Genome Res. 1999;9(9):868-77.
    • (1999) Genome Res , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 20
    • 84890829647 scopus 로고    scopus 로고
    • The Amborella genome and the evolution of flowering plants
    • Amborella Genome Project. The Amborella genome and the evolution of flowering plants. Science. 2013;342(6165):1241089.
    • (2013) Science , vol.342 , Issue.6165 , pp. 1241089
  • 21
    • 67049158202 scopus 로고    scopus 로고
    • Transcriptional signatures of ancient floral developmental genetics in avocado (Persea americana; Lauraceae)
    • Chanderbali AS, Albert VA, Leebens-Mack J, Altman NS, Soltis DE, Soltis PS. Transcriptional signatures of ancient floral developmental genetics in avocado (Persea americana; Lauraceae). Proc Natl Acad Sci. 2009;106(22):8929-34.
    • (2009) Proc Natl Acad Sci , vol.106 , Issue.22 , pp. 8929-8934
    • Chanderbali, A.S.1    Albert, V.A.2    Leebens-Mack, J.3    Altman, N.S.4    Soltis, D.E.5    Soltis, P.S.6
  • 23
    • 33747846582 scopus 로고    scopus 로고
    • WEGO: a web tool for plotting GO annotations
    • Ye J, Fang L, Zheng H, Zhang Y, Chen J, Zhang Z, et al. WEGO: a web tool for plotting GO annotations. Nucleic Acids Res. 2006;34(Web Server issue):W293-7.
    • (2006) Nucleic Acids Res , vol.34 , Issue.WEB SERVER ISSUE , pp. W293-W297
    • Ye, J.1    Fang, L.2    Zheng, H.3    Zhang, Y.4    Chen, J.5    Zhang, Z.6
  • 24
    • 34547588704 scopus 로고    scopus 로고
    • KAAS: an automatic genome annotation and pathway reconstruction server
    • Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 2007;35(Web Server issue):W182-5.
    • (2007) Nucleic Acids Res , vol.35 , Issue.WEB SERVER ISSUE , pp. W182-W185
    • Moriya, Y.1    Itoh, M.2    Okuda, S.3    Yoshizawa, A.C.4    Kanehisa, M.5
  • 26
    • 53749085372 scopus 로고    scopus 로고
    • The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana
    • Aceituno FF, Moseyko N, Rhee SY, Gutierrez RA. The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana. BMC Genomics. 2008;9:438.
    • (2008) BMC Genomics , vol.9 , pp. 438
    • Aceituno, F.F.1    Moseyko, N.2    Rhee, S.Y.3    Gutierrez, R.A.4
  • 28
    • 59149095771 scopus 로고    scopus 로고
    • A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies
    • Jiao Y, Tausta SL, Gandotra N, Sun N, Liu T, Clay NK, et al. A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies. Nat Genet. 2009;41(2):258-63.
    • (2009) Nat Genet , vol.41 , Issue.2 , pp. 258-263
    • Jiao, Y.1    Tausta, S.L.2    Gandotra, N.3    Sun, N.4    Liu, T.5    Clay, N.K.6
  • 30
    • 68449101071 scopus 로고    scopus 로고
    • Dissection of symbiosis and organ development by integrated transcriptome analysis of Lotus japonicus mutant and wild-type plants
    • Hogslund N, Radutoiu S, Krusell L, Voroshilova V, Hannah MA, Goffard N, et al. Dissection of symbiosis and organ development by integrated transcriptome analysis of Lotus japonicus mutant and wild-type plants. PLoS One. 2009;4(8), e6556.
    • (2009) PLoS One , vol.4 , Issue.8
    • Hogslund, N.1    Radutoiu, S.2    Krusell, L.3    Voroshilova, V.4    Hannah, M.A.5    Goffard, N.6
  • 32
    • 0034518635 scopus 로고    scopus 로고
    • The comparison of gene expression from multiple cDNA libraries
    • Stekel DJ, Git Y, Falciani F. The comparison of gene expression from multiple cDNA libraries. Genome Res. 2000;10(12):2055-61.
    • (2000) Genome Res , vol.10 , Issue.12 , pp. 2055-2061
    • Stekel, D.J.1    Git, Y.2    Falciani, F.3
  • 33
    • 10744223372 scopus 로고    scopus 로고
    • The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence
    • Fizames C, Muños S, Cazettes C, Nacry P, Boucherez J, Gaymard F, et al. The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence. Plant Physiol. 2004;134(1):67-80.
    • (2004) Plant Physiol , vol.134 , Issue.1 , pp. 67-80
    • Fizames, C.1    Muños, S.2    Cazettes, C.3    Nacry, P.4    Boucherez, J.5    Gaymard, F.6
  • 34
    • 0028518740 scopus 로고
    • Spatially and temporally regulated expression of the MADS-box gene AGL2 in wild-type and mutant Arabidopsis flowers
    • Flanagan CA, Ma H. Spatially and temporally regulated expression of the MADS-box gene AGL2 in wild-type and mutant Arabidopsis flowers. Plant Mol Biol. 1994;26(2):581-95.
    • (1994) Plant Mol Biol , vol.26 , Issue.2 , pp. 581-595
    • Flanagan, C.A.1    Ma, H.2
  • 35
    • 78650619997 scopus 로고    scopus 로고
    • AGAMOUS-LIKE 6 is a floral promoter that negatively regulates the FLC/MAF clade genes and positively regulates FT in Arabidopsis
    • Yoo SK, Wu X, Lee JS, Ahn JH. AGAMOUS-LIKE 6 is a floral promoter that negatively regulates the FLC/MAF clade genes and positively regulates FT in Arabidopsis. Plant J. 2011;65(1):62-76.
    • (2011) Plant J , vol.65 , Issue.1 , pp. 62-76
    • Yoo, S.K.1    Wu, X.2    Lee, J.S.3    Ahn, J.H.4
  • 36
    • 0026532893 scopus 로고
    • The homeotic gene APETALA3 of Arabidopsis thaliana encodes a MADS box and is expressed in petals and stamens
    • Jack T, Brockman LL, Meyerowitz EM. The homeotic gene APETALA3 of Arabidopsis thaliana encodes a MADS box and is expressed in petals and stamens. Cell. 1992;68(4):683-97.
    • (1992) Cell , vol.68 , Issue.4 , pp. 683-697
    • Jack, T.1    Brockman, L.L.2    Meyerowitz, E.M.3
  • 37
    • 0028364530 scopus 로고
    • Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA
    • Goto K, Meyerowitz EM. Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA. Genes Dev. 1994;8(13):1548-60.
    • (1994) Genes Dev , vol.8 , Issue.13 , pp. 1548-1560
    • Goto, K.1    Meyerowitz, E.M.2
  • 38
    • 0028058268 scopus 로고
    • The light-harvesting chlorophyll a/b-binding proteins
    • Jansson S. The light-harvesting chlorophyll a/b-binding proteins. Biochim Biophys Acta. 1994;1184(1):1-19.
    • (1994) Biochim Biophys Acta , vol.1184 , Issue.1 , pp. 1-19
    • Jansson, S.1
  • 39
    • 0033012091 scopus 로고    scopus 로고
    • A guide to the Lhc genes and their relatives in Arabidopsis
    • Jansson S. A guide to the Lhc genes and their relatives in Arabidopsis. Trends Plant Sci. 1999;4(6):236-40.
    • (1999) Trends Plant Sci , vol.4 , Issue.6 , pp. 236-240
    • Jansson, S.1
  • 41
  • 42
    • 11144226997 scopus 로고    scopus 로고
    • Inhibition of prostate cancer cell growth by an avocado extract: role of lipid-soluble bioactive substances
    • Lu QY, Arteaga JR, Zhang Q, Huerta S, Go VL, Heber D. Inhibition of prostate cancer cell growth by an avocado extract: role of lipid-soluble bioactive substances. J Nutr Biochem. 2005;16(1):23-30.
    • (2005) J Nutr Biochem , vol.16 , Issue.1 , pp. 23-30
    • Lu, Q.Y.1    Arteaga, J.R.2    Zhang, Q.3    Huerta, S.4    Go, V.L.5    Heber, D.6
  • 43
    • 0031948520 scopus 로고    scopus 로고
    • Cupins: a new superfamily of functionally diverse proteins that include germins and plant storage proteins
    • Dunwell JM. Cupins: a new superfamily of functionally diverse proteins that include germins and plant storage proteins. Biotechnol Genet Eng Rev. 1998;15:1-32.
    • (1998) Biotechnol Genet Eng Rev , vol.15 , pp. 1-32
    • Dunwell, J.M.1
  • 44
    • 77952220926 scopus 로고    scopus 로고
    • Fasciclin-like arabinogalactan proteins: specialization for stem biomechanics and cell wall architecture in Arabidopsis and Eucalyptus
    • MacMillan CP, Mansfield SD, Stachurski ZH, Evans R, Southerton SG. Fasciclin-like arabinogalactan proteins: specialization for stem biomechanics and cell wall architecture in Arabidopsis and Eucalyptus. Plant J. 2010;62(4):689-703.
    • (2010) Plant J. , vol.62 , Issue.4 , pp. 689-703
    • MacMillan, C.P.1    Mansfield, S.D.2    Stachurski, Z.H.3    Evans, R.4    Southerton, S.G.5
  • 45
    • 0034863915 scopus 로고    scopus 로고
    • Enhanced copper tolerance in Silene vulgaris (Moench) Garcke populations from copper mines is associated with increased transcript levels of a 2b-type metallothionein gene
    • van Hoof NALM, Hassinen VH, Hakvoort HWJ, Ballintijn KF, Schat H, Verkleij JAC, et al. Enhanced copper tolerance in Silene vulgaris (Moench) Garcke populations from copper mines is associated with increased transcript levels of a 2b-type metallothionein gene. Plant Physiol. 2001;126(4):1519-26.
    • (2001) Plant Physiol , vol.126 , Issue.4 , pp. 1519-1526
    • Hoof, N.A.L.M.1    Hassinen, V.H.2    Hakvoort, H.W.J.3    Ballintijn, K.F.4    Schat, H.5    Verkleij, J.A.C.6
  • 46
    • 0028467166 scopus 로고
    • Isolation of cDNA clones for genes that are expressed during leaf senescence in Brassica napus (Identification of a gene encoding a senescence-specific metallothionein-like protein)
    • Buchanan-Wollaston V. Isolation of cDNA clones for genes that are expressed during leaf senescence in Brassica napus (Identification of a gene encoding a senescence-specific metallothionein-like protein). Plant Physiol. 1994;105(3):839-46.
    • (1994) Plant Physiol , vol.105 , Issue.3 , pp. 839-846
    • Buchanan-Wollaston, V.1
  • 47
    • 0038244012 scopus 로고    scopus 로고
    • Molecular cloning of two metallothionein-like protein genes with differential expression patterns from sweet potato (Ipomoea batatas) leaves
    • Chen HJ, Hou WC, Yang CY, Huang DJ, Liu JS, Lin YH. Molecular cloning of two metallothionein-like protein genes with differential expression patterns from sweet potato (Ipomoea batatas) leaves. J Plant Physiol. 2003;160(5):547-55.
    • (2003) J Plant Physiol , vol.160 , Issue.5 , pp. 547-555
    • Chen, H.J.1    Hou, W.C.2    Yang, C.Y.3    Huang, D.J.4    Liu, J.S.5    Lin, Y.H.6
  • 48
    • 0028836598 scopus 로고
    • Characterisation of an mRNA encoding a metallothionein-like protein that accumulates during ethylene-promoted abscission of Sambucus nigra L. leaflets
    • Coupe SA, Taylor JE, Roberts JA. Characterisation of an mRNA encoding a metallothionein-like protein that accumulates during ethylene-promoted abscission of Sambucus nigra L. leaflets. Planta. 1995;197(3):442-7.
    • (1995) Planta , vol.197 , Issue.3 , pp. 442-447
    • Coupe, S.A.1    Taylor, J.E.2    Roberts, J.A.3
  • 49
    • 0035719883 scopus 로고    scopus 로고
    • Identification of genes expressed in response to light stress in leaves of Arabidopsis thaliana using RNA differential display
    • Dunaeva M, Adamska I. Identification of genes expressed in response to light stress in leaves of Arabidopsis thaliana using RNA differential display. Eur J Biochem. 2001;268(21):5521-9.
    • (2001) Eur J Biochem , vol.268 , Issue.21 , pp. 5521-5529
    • Dunaeva, M.1    Adamska, I.2
  • 50
    • 0034901462 scopus 로고    scopus 로고
    • Genes induced during early response to Meloidogyne incognita in roots of resistant and susceptible alfalfa cultivars
    • Potenza C, Thomas SH, Sengupta-Gopalan C. Genes induced during early response to Meloidogyne incognita in roots of resistant and susceptible alfalfa cultivars. Plant Sci. 2001;161(2):289-99.
    • (2001) Plant Sci , vol.161 , Issue.2 , pp. 289-299
    • Potenza, C.1    Thomas, S.H.2    Sengupta-Gopalan, C.3
  • 52
    • 0031251754 scopus 로고    scopus 로고
    • Differential gene expression in ripening banana fruit
    • Clendennen SK, May GD. Differential gene expression in ripening banana fruit. Plant Physiol. 1997;115(2):463-9.
    • (1997) Plant Physiol , vol.115 , Issue.2 , pp. 463-469
    • Clendennen, S.K.1    May, G.D.2
  • 53
    • 0030924358 scopus 로고    scopus 로고
    • Up-regulation of two cDNA clones encoding metallothionein-like proteins in apple fruit during cool storage
    • Reid SJ, Ross GS. Up-regulation of two cDNA clones encoding metallothionein-like proteins in apple fruit during cool storage. Physiol Plant. 1997;100(1):183-9.
    • (1997) Physiol Plant , vol.100 , Issue.1 , pp. 183-189
    • Reid, S.J.1    Ross, G.S.2
  • 54
    • 0028484869 scopus 로고
    • Cloning and characterization of five cDNAs for genes differentially expressed during fruit development of kiwifruit (Actinidia deliciosa var. deliciosa)
    • Ledger SE, Gardner RC. Cloning and characterization of five cDNAs for genes differentially expressed during fruit development of kiwifruit (Actinidia deliciosa var. deliciosa). Plant Mol Biol. 1994;25(5):877-86.
    • (1994) Plant Mol Biol , vol.25 , Issue.5 , pp. 877-886
    • Ledger, S.E.1    Gardner, R.C.2
  • 55
    • 0033767809 scopus 로고    scopus 로고
    • Differential screening indicates a dramatic change in mRNA profiles during grape berry ripening. Cloning and characterization of cDNAs encoding putative cell wall and stress response proteins
    • Davies C, Robinson SP. Differential screening indicates a dramatic change in mRNA profiles during grape berry ripening. Cloning and characterization of cDNAs encoding putative cell wall and stress response proteins. Plant Physiol. 2000;122(3):803-12.
    • (2000) Plant Physiol , vol.122 , Issue.3 , pp. 803-812
    • Davies, C.1    Robinson, S.P.2
  • 56
    • 0032510730 scopus 로고    scopus 로고
    • Characterization of gene repertoires at mature stage of citrus fruits through random sequencing and analysis of redundant metallothionein-like genes expressed during fruit development
    • Moriguchi T, Kita M, Hisada S, Endo-Inagaki T, Omura M. Characterization of gene repertoires at mature stage of citrus fruits through random sequencing and analysis of redundant metallothionein-like genes expressed during fruit development. Gene. 1998;211(2):221-7.
    • (1998) Gene , vol.211 , Issue.2 , pp. 221-227
    • Moriguchi, T.1    Kita, M.2    Hisada, S.3    Endo-Inagaki, T.4    Omura, M.5
  • 57
    • 0033073229 scopus 로고    scopus 로고
    • Isolation and characterization of mRNAs differentially expressed during ripening of wild strawberry (Fragaria vesca L.) fruits
    • Nam YW, Tichit L, Leperlier M, Cuerq B, Marty I, Lelievre JM. Isolation and characterization of mRNAs differentially expressed during ripening of wild strawberry (Fragaria vesca L.) fruits. Plant Mol Biol. 1999;39(3):629-36.
    • (1999) Plant Mol Biol , vol.39 , Issue.3 , pp. 629-636
    • Nam, Y.W.1    Tichit, L.2    Leperlier, M.3    Cuerq, B.4    Marty, I.5    Lelievre, J.M.6
  • 58
    • 11444257734 scopus 로고    scopus 로고
    • Developing pineapple fruit has a small transcriptome dominated by metallothionein
    • Moyle R, Fairbairn DJ, Ripi J, Crowe M, Botella JR. Developing pineapple fruit has a small transcriptome dominated by metallothionein. J Exp Bot. 2005;56(409):101-12.
    • (2005) J Exp Bot , vol.56 , Issue.409 , pp. 101-112
    • Moyle, R.1    Fairbairn, D.J.2    Ripi, J.3    Crowe, M.4    Botella, J.R.5
  • 59
    • 84857950502 scopus 로고    scopus 로고
    • Plant chitinases: genetic diversity and physiological roles
    • Grover A. Plant chitinases: genetic diversity and physiological roles. Crit Rev Plant Sci. 2012;31(1):57-73.
    • (2012) Crit Rev Plant Sci , vol.31 , Issue.1 , pp. 57-73
    • Grover, A.1
  • 60
    • 0036802220 scopus 로고    scopus 로고
    • The abundant class III chitinase homolog in young developing banana fruits behaves as a transient vegetative storage protein and most probably serves as an important supply of amino acids for the synthesis of ripening-associated proteins
    • Peumans WJ, Proost P, Swennen RL, Van Damme EJ. The abundant class III chitinase homolog in young developing banana fruits behaves as a transient vegetative storage protein and most probably serves as an important supply of amino acids for the synthesis of ripening-associated proteins. Plant Physiol. 2002;130(2):1063-72.
    • (2002) Plant Physiol , vol.130 , Issue.2 , pp. 1063-1072
    • Peumans, W.J.1    Proost, P.2    Swennen, R.L.3    Damme, E.J.4
  • 61
    • 0030903226 scopus 로고    scopus 로고
    • Characterization of chitinases and β-1,3-glucanases in grapefruit flavedo during fruit development
    • McCollum TG, Doostdar H, Mayer RT, McDonald RE. Characterization of chitinases and β-1,3-glucanases in grapefruit flavedo during fruit development. Physiol Plant. 1997;99(3):486-94.
    • (1997) Physiol Plant , vol.99 , Issue.3 , pp. 486-494
    • McCollum, T.G.1    Doostdar, H.2    Mayer, R.T.3    McDonald, R.E.4
  • 64
    • 0001212489 scopus 로고
    • Ethylene biosynthesis and its regulation in higher plants
    • Yang SF, Hoffman NE. Ethylene biosynthesis and its regulation in higher plants. Annu Rev Plant Physiol. 1984;35(1):155-89.
    • (1984) Annu Rev Plant Physiol , vol.35 , Issue.1 , pp. 155-189
    • Yang, S.F.1    Hoffman, N.E.2
  • 65
    • 0033371265 scopus 로고    scopus 로고
    • Characterization of ethylene biosynthesis associated with ripening in banana fruit
    • Liu X, Shiomi S, Nakatsuka A, Kubo Y, Nakamura R, Inaba A. Characterization of ethylene biosynthesis associated with ripening in banana fruit. Plant Physiol. 1999;121(4):1257-65.
    • (1999) Plant Physiol , vol.121 , Issue.4 , pp. 1257-1265
    • Liu, X.1    Shiomi, S.2    Nakatsuka, A.3    Kubo, Y.4    Nakamura, R.5    Inaba, A.6
  • 66
    • 33748648170 scopus 로고    scopus 로고
    • Ethylene and fruit ripening: from illumination gas to the control of gene expression, more than a century of discoveries
    • Chaves ALS, Mello-Farias PC. Ethylene and fruit ripening: from illumination gas to the control of gene expression, more than a century of discoveries. Genet Mol Biol. 2006;29:508-15.
    • (2006) Genet Mol Biol , vol.29 , pp. 508-515
    • Chaves, A.L.S.1    Mello-Farias, P.C.2
  • 67
    • 0000241185 scopus 로고
    • Regulation of gene expression by ethylene in wild-type and rin tomato (Lycopersicon esculentum) fruit
    • Lincoln JE, Fischer RL. Regulation of gene expression by ethylene in wild-type and rin tomato (Lycopersicon esculentum) fruit. Plant Physiol. 1988;88(2):370-4.
    • (1988) Plant Physiol , vol.88 , Issue.2 , pp. 370-374
    • Lincoln, J.E.1    Fischer, R.L.2
  • 68
    • 84892776920 scopus 로고    scopus 로고
    • A new tomato NAC (NAM/ATAF1/2/CUC2) transcription factor, SlNAC4, functions as a positive regulator of fruit ripening and carotenoid accumulation
    • Zhu M, Chen G, Zhou S, Tu Y, Wang Y, Dong T, et al. A new tomato NAC (NAM/ATAF1/2/CUC2) transcription factor, SlNAC4, functions as a positive regulator of fruit ripening and carotenoid accumulation. Plant Cell Physiol. 2014;55(1):119-35.
    • (2014) Plant Cell Physiol , vol.55 , Issue.1 , pp. 119-135
    • Zhu, M.1    Chen, G.2    Zhou, S.3    Tu, Y.4    Wang, Y.5    Dong, T.6
  • 69
    • 0032765673 scopus 로고    scopus 로고
    • Molecular and genetic characterization of a novel pleiotropic tomato-ripening mutant
    • Thompson AJ, Tor M, Barry CS, Vrebalov J, Orfila C, Jarvis MC, et al. Molecular and genetic characterization of a novel pleiotropic tomato-ripening mutant. Plant Physiol. 1999;120(2):383-90.
    • (1999) Plant Physiol , vol.120 , Issue.2 , pp. 383-390
    • Thompson, A.J.1    Tor, M.2    Barry, C.S.3    Vrebalov, J.4    Orfila, C.5    Jarvis, M.C.6
  • 70
    • 0037066465 scopus 로고    scopus 로고
    • A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (rin) locus
    • Vrebalov J, Ruezinsky D, Padmanabhan V, White R, Medrano D, Drake R, et al. A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (rin) locus. Science. 2002;296(5566):343-6.
    • (2002) Science , vol.296 , Issue.5566 , pp. 343-346
    • Vrebalov, J.1    Ruezinsky, D.2    Padmanabhan, V.3    White, R.4    Medrano, D.5    Drake, R.6
  • 71
    • 2942690153 scopus 로고    scopus 로고
    • Genetic regulation of fruit development and ripening
    • Giovannoni JJ. Genetic regulation of fruit development and ripening. Plant Cell. 2004;16(Suppl):S170-80.
    • (2004) Plant Cell , vol.16 , pp. S170-S180
    • Giovannoni, J.J.1
  • 72
    • 33746513103 scopus 로고    scopus 로고
    • A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening
    • Manning K, Tor M, Poole M, Hong Y, Thompson AJ, King GJ, et al. A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. Nat Genet. 2006;38(8):948-52.
    • (2006) Nat Genet , vol.38 , Issue.8 , pp. 948-952
    • Manning, K.1    Tor, M.2    Poole, M.3    Hong, Y.4    Thompson, A.J.5    King, G.J.6
  • 73
    • 34248213602 scopus 로고    scopus 로고
    • Fruit ripening mutants yield insights into ripening control
    • Giovannoni JJ. Fruit ripening mutants yield insights into ripening control. Curr Opin Plant Biol. 2007;10(3):283-9.
    • (2007) Curr Opin Plant Biol , vol.10 , Issue.3 , pp. 283-289
    • Giovannoni, J.J.1
  • 74
    • 55249126436 scopus 로고    scopus 로고
    • DNA-binding specificity, transcriptional activation potential, and the rin mutation effect for the tomato fruit-ripening regulator RIN
    • Ito Y, Kitagawa M, Ihashi N, Yabe K, Kimbara J, Yasuda J, et al. DNA-binding specificity, transcriptional activation potential, and the rin mutation effect for the tomato fruit-ripening regulator RIN. Plant J. 2008;55(2):212-23.
    • (2008) Plant J , vol.55 , Issue.2 , pp. 212-223
    • Ito, Y.1    Kitagawa, M.2    Ihashi, N.3    Yabe, K.4    Kimbara, J.5    Yasuda, J.6
  • 75
    • 72049107455 scopus 로고    scopus 로고
    • Fleshy fruit expansion and ripening are regulated by the tomato SHATTERPROOF gene TAGL1
    • Vrebalov J, Pan IL, Arroyo AJ, McQuinn R, Chung M, Poole M, et al. Fleshy fruit expansion and ripening are regulated by the tomato SHATTERPROOF gene TAGL1. Plant Cell. 2009;21(10):3041-62.
    • (2009) Plant Cell , vol.21 , Issue.10 , pp. 3041-3062
    • Vrebalov, J.1    Pan, I.L.2    Arroyo, A.J.3    McQuinn, R.4    Chung, M.5    Poole, M.6
  • 76
    • 55249116565 scopus 로고    scopus 로고
    • A tomato HD-Zip homeobox protein, LeHB-1, plays an important role in floral organogenesis and ripening
    • Lin Z, Hong Y, Yin M, Li C, Zhang K, Grierson D. A tomato HD-Zip homeobox protein, LeHB-1, plays an important role in floral organogenesis and ripening. Plant J. 2008;55(2):301-10.
    • (2008) Plant J , vol.55 , Issue.2 , pp. 301-310
    • Lin, Z.1    Hong, Y.2    Yin, M.3    Li, C.4    Zhang, K.5    Grierson, D.6
  • 77
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M, Guindon S, Gascuel O. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol. 2010;27(2):221-4.
    • (2010) Mol Biol Evol , vol.27 , Issue.2 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 78
    • 0000555489 scopus 로고    scopus 로고
    • Pathogenesis-related proteins and plant defense
    • Carroll G, Tudzynski P, editors Berlin Heidelberg: Springer
    • Kombrink E, Somssich IE. Pathogenesis-related proteins and plant defense. In: Carroll G, Tudzynski P, editors. Plant relationships vol 5. Berlin Heidelberg: Springer; 1997. p. 107-28.
    • (1997) Plant relationships , vol.5 , pp. 107-128
    • Kombrink, E.1    Somssich, I.E.2
  • 79
    • 0038460019 scopus 로고    scopus 로고
    • Arabidopsis genes involved in acyl lipid metabolism. A 2003 census of the candidates, a study of the distribution of expressed sequence tags in organs, and a web-based database
    • Beisson F, Koo AJK, Ruuska S, Schwender J, Pollard M, Thelen JJ, et al. Arabidopsis genes involved in acyl lipid metabolism. A 2003 census of the candidates, a study of the distribution of expressed sequence tags in organs, and a web-based database. Plant Physiol. 2003;132(2):681-97.
    • (2003) Plant Physiol , vol.132 , Issue.2 , pp. 681-697
    • Beisson, F.1    Koo, A.J.K.2    Ruuska, S.3    Schwender, J.4    Pollard, M.5    Thelen, J.J.6
  • 80
    • 83555174647 scopus 로고    scopus 로고
    • Comparative deep transcriptional profiling of four developing oilseeds
    • Troncoso-Ponce MA, Kilaru A, Cao X, Durrett TP, Fan J, Jensen JK, et al. Comparative deep transcriptional profiling of four developing oilseeds. Plant J. 2011;68(6):1014-27.
    • (2011) Plant J , vol.68 , Issue.6 , pp. 1014-1027
    • Troncoso-Ponce, M.A.1    Kilaru, A.2    Cao, X.3    Durrett, T.P.4    Fan, J.5    Jensen, J.K.6
  • 81
    • 0010230704 scopus 로고
    • Triglyceride and fatty acid compositions in the mesocarp of Persea americana during fruit development
    • Gaydou EM, Lozano Y, Ratovohery J. Triglyceride and fatty acid compositions in the mesocarp of Persea americana during fruit development. Phytochemistry. 1987;26(6):1595-7.
    • (1987) Phytochemistry , vol.26 , Issue.6 , pp. 1595-1597
    • Gaydou, E.M.1    Lozano, Y.2    Ratovohery, J.3
  • 82
    • 0023287303 scopus 로고
    • Avocado oil production and chemical characteristics
    • Werman MJ, Neeman I. Avocado oil production and chemical characteristics. J Am Oil Chem Soc. 1987;64(2):229-32.
    • (1987) J Am Oil Chem Soc , vol.64 , Issue.2 , pp. 229-232
    • Werman, M.J.1    Neeman, I.2
  • 85
    • 34748816101 scopus 로고    scopus 로고
    • Characterization of the oils from the pulp and seeds of avocado (cultivar: Fuerte) fruits.
    • Bora PS, Narain N, Rocha RVM, Paulo MQ. Characterization of the oils from the pulp and seeds of avocado (cultivar: Fuerte) fruits. Grasas Aceites. 2001;52(3/4):171-4.
    • (2001) Grasas Aceites , vol.52 , Issue.3-4 , pp. 171-174
    • Bora, P.S.1    Narain, N.2    Rocha, R.V.M.3    Paulo, M.Q.4
  • 86
    • 84872414844 scopus 로고    scopus 로고
    • Hass avocado composition and potential health effects
    • Dreher ML, Davenport AJ. Hass avocado composition and potential health effects. Crit Rev Food Sci Nutr. 2012;53(7):738-50.
    • (2012) Crit Rev Food Sci Nutr , vol.53 , Issue.7 , pp. 738-750
    • Dreher, M.L.1    Davenport, A.J.2
  • 87
    • 80655123134 scopus 로고    scopus 로고
    • Synthesis and in vitro evaluation of analogues of avocado-produced toxin (+)-(R)-persin in human breast cancer cells
    • Brooke DG, Shelley EJ, Roberts CG, Denny WA, Sutherland RL, Butt AJ. Synthesis and in vitro evaluation of analogues of avocado-produced toxin (+)-(R)-persin in human breast cancer cells. Bioorg Med Chem. 2011;19(23):7033-43.
    • (2011) Bioorg Med Chem , vol.19 , Issue.23 , pp. 7033-7043
    • Brooke, D.G.1    Shelley, E.J.2    Roberts, C.G.3    Denny, W.A.4    Sutherland, R.L.5    Butt, A.J.6
  • 89
    • 0034099882 scopus 로고    scopus 로고
    • Ethylene regulation of fruit ripening: molecular aspects
    • Jiang Y, Fu J. Ethylene regulation of fruit ripening: molecular aspects. Plant Growth Regul. 2000;30(3):193-200.
    • (2000) Plant Growth Regul , vol.30 , Issue.3 , pp. 193-200
    • Jiang, Y.1    Fu, J.2
  • 90
    • 77950645212 scopus 로고    scopus 로고
    • Artificial and natural duplicates in pyrosequencing reads of metagenomic data
    • Niu B, Fu L, Sun S, Li W. Artificial and natural duplicates in pyrosequencing reads of metagenomic data. BMC Bioinformatics. 2010;11:187.
    • (2010) BMC Bioinformatics , vol.11 , pp. 187
    • Niu, B.1    Fu, L.2    Sun, S.3    Li, W.4
  • 91
    • 84925503715 scopus 로고    scopus 로고
    • De novo transcriptome assembly for a non-model species, the blood-sucking bug Triatoma brasiliensis, a vector of Chagas disease
    • Marchant A, Mougel F, Almeida C, Jacquin-Joly E, Costa J, Harry M. De novo transcriptome assembly for a non-model species, the blood-sucking bug Triatoma brasiliensis, a vector of Chagas disease. Genetica. 2015;143(2):225-39.
    • (2015) Genetica , vol.143 , Issue.2 , pp. 225-239
    • Marchant, A.1    Mougel, F.2    Almeida, C.3    Jacquin-Joly, E.4    Costa, J.5    Harry, M.6
  • 94
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods. 2001;25(4):402-8.
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 95
    • 84870847436 scopus 로고    scopus 로고
    • Identification and comparative analysis of microRNAs associated with low-N tolerance in rice genotypes
    • Nischal L, Mohsin M, Khan I, Kardam H, Wadhwa A, Abrol YP, et al. Identification and comparative analysis of microRNAs associated with low-N tolerance in rice genotypes. PLoS One. 2012;7(12), e50261.
    • (2012) PLoS One , vol.7 , Issue.12
    • Nischal, L.1    Mohsin, M.2    Khan, I.3    Kardam, H.4    Wadhwa, A.5    Abrol, Y.P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.