Characterization of gene repertoires at mature stage of citrus fruits through random sequencing and analysis of redundant metallothionein-like genes expressed during fruit development

Gene

Volumn 211, Issue 2, 1998, Pages 221-227

  Moriguchi, Takaya ^a   Kita, Masayuki ^b   Hisada, Sunao ^c   Endo Inagaki, Tomoko ^a   Omura, Mitsuo ^a  

^a Department of Citriculture   (Japan)

^b TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

^c MEIJI UNIVERSITY   (Japan)

Author keywords

cDNA library; Citrus unshiu; Expressed sequence tag; Satsuma mandarin

Indexed keywords

COMPLEMENTARY DNA; METALLOTHIONEIN;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CITRUS FRUIT; CLONE; CONSENSUS SEQUENCE; DATA BASE; DNA SEQUENCE; GENE ISOLATION; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GROWTH; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SEQUENCE TAGGED SITE; SOUTHERN BLOTTING;

AMINO ACID SEQUENCE; BLOTTING, NORTHERN; BLOTTING, SOUTHERN; CITRUS; DNA, COMPLEMENTARY; DNA, PLANT; GENE DOSAGE; GENE EXPRESSION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENE LIBRARY; GENES; GENES, PLANT; GENOME; METALLOTHIONEIN; MOLECULAR SEQUENCE DATA; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; RNA, PLANT; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

CITRUS; CITRUS UNSHIU; EMBRYOPHYTA;

EID: 0032510730     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(98)00138-3     Document Type: Article

References (37)

1. Adams M.D., Kelley J.M., Gocayne J.D., Dubnick M., Polymeropoulos M.H., Xiao H., Merril C.R., Wu A., Olde B., Moreno R.F., Kerlavage A.R., McCombie W.R., Venter J.C. Complementary DNA sequencing: Expressed sequence tags and the human genome project. Science. 252:1991;1651-1656.
2. Adams M.D., Dubnick M., Kerlavage A.R., Moreno R., Kelley J.M., Utterback T.R., Nagle J.W., Fields C., Venter J.C. Sequence identification of 2,375 human brain genes. Nature. 55:1992;632-634.
3. Birnboim H.C., Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7:1979;1513-1523.
4. Buchanan-Wollaston V. Isolation of a cDNA clones for genes that are expressed during leaf senescence in Brassica napus. Identification of a gene encoding a senescence-specific metallothionein-like protein. Plant Physiol. 105:1994;839-846.
5. Choi D., Kim H.M., Yun H.K., Park J-A., Kim W.T., Bok S.H. Molecular cloning of a metallothionein-like gene from Nicotiana glutinosa L. and its induction by wounding and tobacco mosaic virus infection. Plant Physiol. 112:1996;353-359.
6. Cooke R., Raynal M., Laudié M., Grellet F., Delseny M., Morris P.-C., Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R., Krivitzky M.I., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J., Fleck J., Clément B., Philipps G., Hervé C., Bardet C., Tremousaygue D., Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P., Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Höfte H. Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs. Plant J. 9:1996;101-124.
7. Coupe S.A., Taylor J.E., Roberts J.A. Charcterization of an mRNA encoding a metallothionein-like protein that accumulates during ethylene-promoted abscissin of Sambucus nigra L. leaflets. Planta. 197:1995;442-447.
8. Dellaporta S.L., Wood J.L., Hicks J.B. A plant DNA minipreparation: version II. Plant Mol. Biol. Rep. 1:1983;19-21.
9. de Miranda J.R., Thomas M.A., Thurman D.A., Tomsett A.B. Metallothionein gene from the flowering plant Mimulus guttatus. FEBS Lett. 260:1990;277-280.
10. Elmayan T., Tepfar M. Synthesis of a bifunctional metallothionein/beta-glucuronidase fusion protein in transgenic tobacco plants as a means of reducing leaf cadmium levels. Plant J. 6:1994;433-440.
11. Furst P., Hu S., Hackett R., Hamer D. Copper activates metallothionein gene transcription by altering the conformation of a specific DNA binding protein. Cell. 55:1988;705-717.
12. Hamer D.H. Metallothionein. Annu. Rev. Biochem. 55:1986;913-951.
13. Hattori J., Labbe H., Miki B.L. Construction and expression of metallothionein-beta-glucuronidase gene fusion. Genome. 37:1994;508-512.
14. Hisada S., Moriguchi T., Hidaka T., Koltunow A.M., Akihama T., Omura M. Random sequencing of sweet orange (Citrus sinensis Osbeck) cDNA library derived from young seeds. J. Japan. Soc. Hort. Sci. 65:1996;487-495.
15. Hisada S., Akihama T., Endo T., Moriguchi T., Omura M. Expressed sequence tags of Citrus fruit during rapid cell development phase. J. Am. Soc. Hort. Sci. 122:1997;808-812.
16. Höfte H., Desprez T., Amselem J., Chiapello H., Caboche M., Moisan A., Jourjon M.F., Charpenteau J.L., Berthomieu P., Guerrier D., Giraudat J., Quigley F., Thomas F., Yu D.Y., Mache R., Raynal M., Cooke R., Grellet F., Delseny M., Parmentier Y., Marcillac G., Gigot C., Fleck J., Philipps G., Axelos M., Bardet C., Tremousaygue D., Lescure B. An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana. Plant J. 4:1993;1051-1061.
17. Hudspeth R.L., Hobbs S.L., Anderson D.M., Rajasekaran K., Grula J.W. Characterization and expression of metallothionein-like genes in cotton. Plant Mol. Biol. 31:1996;701-705.
18. Ikoma Y., Yano M., Ogawa K., Yoshioka T., Xu Z.C., Hisada S., Omura M., Moriguchi T. Isolation and evaluation of RNA from polysaccharide-rich tissues in fruit for quality by cDNA library construction and RT-PCR. J. Japan. Soc. Hort. Sci. 64:1996;809-814.
19. Kägi J.H.R., Schaffer A. Biochemistry of metallothionein. Biochemistry. 27:1988;8509-8515.
20. + metallothionein genes are conspicuously expressed during embryogenesis. Eur. J. Biochem. 209:1992;971-976.
21. Keith C.S., Hoang D.O., Barrett B.M., Feigelman B., Nelson M.C., Thai H., Baysdorfer C. Partial sequence analysis of 130 randomly selected maize cDNA clones. Plant Physiol. 101:1993;329-332.
22. Komatsu A., Takanokura Y., Omura M., Akihama T. Cloning and molecular analysis of cDNAs encoding three sucrose phosphate synthase isoforms from citrus (Citrus unshiu Marc.). Mol. Gen. Genet. 252:1996;346-351.
23. Ledger A.E., Gardner R.C. Cloning and characterization of five cDNAs for genes differentially expressed during fruit development of kiwifruit (Actinidia deliciosa var. deliciosa). Plant Mol. Biol. 25:1994;877-886.
24. Lim C.O., Kim H.Y., Kim M.G., Lee S.I., Chung W.S., Park S.H., Hwang I., Cho M.J. Expressed sequence tags of chinese cabbage flower bud cDNA. Plant Physiol. 111:1996;577-588.
25. Misra S., Gedamu L. Heavy metal tolerant transgenic Brassica napus L. and Nicotiana tabacum L. plants. Theor. Appl. Genet. 78:1989;161-168.
26. Murphy A., Zhou J., Goldsbrough P.B., Taiz L. Purification and immunological identification of metallothioneins 1 and 2 from Arabidopsis thaliana. Plant Physiol. 113:1997;1293-1301.
27. Newman T., de Bruijn F.J., Green P., Keegstra K., Kende H., McIntosh L., Ohlrogge J., Raikhel N., Somerville S., Thomashow M., Retzel E., Somerville C. Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. Plant Physiol. 106:1994;1241-1255.
28. Pan A., Yang M., Tie F., Li L., Chen Z., Ru B. Expression of mouse metallothionein-I gene confers cadmium resistance in transgenic tobacco plants. Plant Mol. Biol. 24:1994;341-351.
29. Park Y.S., Kwak J.M., Kwon O.Y., Kim Y.S., Lee D.S., Cho M.J., Lee M.H., Nam H.G. Generation of expressed sequence tags of random root cDNA clones of Brassica napus by single-run partial sequencing. Plant Physiol. 103:1993;359-370.
30. Pearson W.R., Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA. 85:1988;2444-2448.
31. Reid S.J., Ross G.S. Up-regulation of two cDNA clones encoding metallothionein-like proteins in apple fruit during cool storage. Physiol. Plant. 100:1997;183-189.
32. Sasaki T., Song J., Koga-Ban Y., Matsui E., Fang F., Higo H., Nagasaki H., Hori M., Miya M., Murayama-Kayano E., Takiguchi T., Takasuga A., Niki T., Ishimaru K., Ikeda H., Yamamoto Y., Mukai Y., Ohta I., Miyadera N., Havukkala I., Minobe Y. Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library. Plant J. 6:1994;615-624.
33. Shen B., Carneiro N., Torres-Jerez I., Stevenson B., McCreery T., Helentjaris T., Baysdorfer C., Almira E., Ferl R.J., Habben J.E., Larkins B. Partial sequencing and mapping of clones from two maize cDNA libraries. Plant Mol. Biol. 26:1994;1085-1101.
34. Smith L.H., Sanders J.Z., Kaiser R.J., Hughes P., Dodd C., Connell C.R., Heiner C., Kent S.B.H., Hood L.E. Fluorescence detection in automated DNA sequence analysis. Nature. 321:1986;674-679.
35. Uchimiya H., Kidou S., Shimazaki T., Aotsuka S., Takamatsu S., Nishi R., Hashimoto H., Matsubayashi Y., Kidou N., Umeda M., Kato A. Random sequencing of cDNA libraries reveals a variety of expressed genes in cultured cells of rice (Oryza sativa L.). Plant J. 2:1992;1005-1009.
36. Yeargan R., Maiti I.B., Nielsen M.T., Hunt A.G., Wagner G.J. Tissue partitioning of cadmium in transgenic tobacco seedlings and field grown plants expressing the mouse metallothionein I gene. Transgenic Res. 1:1992;261-267.
37. Zhou J., Goldsbrough P.B. Structure, organization and expression of the metallothionein gene family in Arabidopsis. Mol. Gen. Genet. 248:1995;318-328.