Mass spectrometric metabolomic imaging of biofilms on corroding steel surfaces using laser ablation and solvent capture by aspiration

Biointerphases

Volumn 10, Issue 1, 2015, Pages

  Brauer, Jonathan I ^a   Makama, Zakari ^a   Bonifay, Vincent ^a   Aydin, Egemen ^a   Kaufman, Eric D ^a   Beech, Iwona B ^a   Sunner, Jan ^a  

^a UNIVERSITY OF OKLAHOMA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABLATION; BIOFILMS; CARBON STEEL; CHEMICAL ATTACK; CRYSTALLOGRAPHY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; LASER ABLATION; MASS SPECTROMETERS; MASS SPECTROMETRY; METABOLITES; MICROBIAL CORROSION; MICROWAVE INTEGRATED CIRCUITS; PROFILOMETRY; SEARCH ENGINES; SEAWATER CORROSION;

CARBON STEEL SUBSTRATES; CHEMICAL COMPOSITIONS; CORROSION PRODUCTS; HETEROGENEOUS DISTRIBUTIONS; MASS SPECTROMETRIC IMAGING; MASS SPECTROMETRY ANALYSIS; METABOLIC ANALYSIS; TWO MODEL SYSTEMS;

STEEL CORROSION;

STEEL;

BACTERIUM; BIOFILM; CHEMISTRY; CORROSION; FLUORESCENCE IMAGING; GROWTH, DEVELOPMENT AND AGING; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLISM; METABOLOME; MICROBIOLOGY;

BACTERIA; BIOFILMS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CORROSION; ENVIRONMENTAL MICROBIOLOGY; MASS SPECTROMETRY; METABOLOME; OPTICAL IMAGING; STEEL;

EID: 84938788972     PISSN: 19348630     EISSN: 15594106     Source Type: Journal    
DOI: 10.1116/1.4906744     Document Type: Article

References (43)

1. C. E. Zobell and D. Q. Anderson, Biol. Bull. 71, 324 (1936).10.2307/1537438
2. L. Hall-Stoodley, J. W. Costerton, and P. Stoodley, Nat. Rev. Microbiol. 2, 95 (2004).10.1038/nrmicro821
3. O. E. Petrova and K. Sauer, PLoS Pathog. 5, e1000668 (2009).10.1371/journal.ppat.1000668
4. K. Sauer, Genome Biol. 4, 219 (2003).10.1186/gb-2003-4-6-219
5. E. T. Ben-Ari, BioScience 49, 689 (1999).10.2307/1313592
6. T. Tolker-Nielsen and S. Molin, Microb. Ecol. 40, 75 (2000).10.1007/s002480000057
7. D. R. Korber, J. R. Lawrence, and D. E. Caldwell, Appl. Environ. Microbiol. 60, 1421 (1994).
8. P. Stoodley and D. deBeer, Appl. Environ. Microbiol. 60, 2711 (1994).
9. P. S. Stewart, J. Bacteriol. 185, 1485 (2003).10.1128/JB.185.5.1485-1491.2003
10. K. De Roy, M. Marzorati, P. Van den Abbeele, T. Van de Wiele, and N. Boon, Environ. Microbiol. 16, 1472 (2014).10.1111/1462-2920.12343
11. I. B. Beech, R. C. Tapper, and R. J. Gubner"Microscopy methods for studying biofilms" in Biofilms: Recent Advances in Their Study and Control, 1st ed., edited by L. V. Evans (Harwood Academic, Amsterdam, 2000), pp. 51-70.
12. B. Little, P. Wagner, R. Ray, R. Pope, and R. Scheetz, J. Ind. Microbiol. 8, 213 (1991).10.1007/BF01576058
13. I. B. Beech, C. W. S. Cheung, D. B. Johnson, and J. R. Smith, Biofouling 10, 65 (1996).10.1080/08927019609386271
14. J. H. Priester, A. M. Horst, L. C. Van de Werfhorst, J. L. Saleta, L. A. K. Mertes, and P. A. Holden, J. Microbiol. Methods 68, 577 (2007).10.1016/j.mimet.2006.10.018
15. D. T. Goddard, A. Steele, I. B. Beech, and M. J. Miles, Scanning Microsc. 10, 983 (1996).
16. D. P. J. Bremer, G. G. Geesey, and B. Drake, Curr. Microbiol. 24, 223 (1992).10.1007/BF01579285
17. S. B. Surman et al., J. Microbiol. Methods 25, 57 (1996).10.1016/0167-7012(95)00085-2
18. A. K. Wessel, L. Hmelo, M. R. Parsek, and M. Whiteley, Nat. Rev. Microbiol. 11, 337 (2013).10.1038/nrmicro3010
19. X. Liu, M. M. Ramsey, X. Chen, D. Koley, M. Whiteley, and A. J. Bard, Proc. Natl. Acad. Sci. U.S.A. 108, 2668 (2011).10.1073/pnas.1018391108
20. C. M. Santegoeds, G. Muyzer, and D. de Beer, Water Sci. Technol. 37, 125 (1998).10.1016/S0273-1223(98)00094-8
21. N. B. Ramsing, M. Kühl, and B. B. Jørgensen, Appl. Environ. Microbiol. 59, 3840 (1993).
22. D. Minz, J. L. Flax, S. J. Green, G. Muyzer, Y. Cohen, M. Wagner, B. E. Rittmann, and D. A. Stahl, Appl. Environ. Microbiol. 65, 4666 (1999).
23. D. Minz, S. Fishbain, S. J. Green, G. Muyzer, Y. Cohen, B. E. Rittmann, and D. A. Stahl, Appl. Environ. Microbiol. 65, 4659 (1999).
24. H. Satoh, I. Tsushima, Y. Miura, T. Ito, and S. Okabe, Water Sci. Technol. 65, 2125 (2012).10.2166/wst.2012.117
25. A. Schramm, L. H. Larsen, N. P. Revsbech, and R. I. Amann, Water Sci. Technol. 36, 263 (1997).10.1016/S0273-1223(97)00333-8
26. A. Schramm, D. de Beer, M.Wagner, and R. Amann, Appl. Environ. Microbiol. 64, 3480 (1998).
27. S. Okabe, H. Satoh, and Y. Watanabe, Appl. Environ. Microbiol. 65, 3182 (1999).
28. A. Schramm, D. de Beer, J. C. van den Heuvel, S. Ottengraf, and R. Amann, Appl. Environ. Microbiol. 65, 3690 (1999).
29. G. M. Wolfaardt, J. R. Lawrence, R. D. Robarts, S. J. Caldwell, and D. E. Caldwell, Appl. Environ. Microbiol. 60, 434 (1994).
30. A. T. Nielsen, T. Tolker-Nielsen, K. B. Barken, and S. Molin, Environ. Microbiol. 2, 59 (2000).10.1046/j.1462-2920.2000.00084.x
31. I. S. Gilmore, J. Vac. Sci. Technol., A 31, 050819 (2013).10.1116/1.4816935
32. R. M. Caprioli, T. B. Farmer, and J. Gile, Anal. Chem. 69, 4751 (1997).10.1021/ac970888i
33. C. Wu, A. L. Dill, L. S. Eberlin, R. G. Cooks, and D. R. Ifa, Mass Spectrom. Rev. 32, 218 (2013).10.1002/mas.21360
34. J. D. Watrous and P. C. Dorrestein, Nat. Rev. Microbiol. 9, 683 (2011).10.1038/nrmicro2634
35. J. L. Murray, J. L. Connell, A. Stacy, K. H. Turner, and M. Whiteley, J. Microbiol. 52, 188 (2014).10.1007/s12275-014-4067-3
36. T. R. Lenhart, K. E. Duncan, I. B. Beech, J. A. Sunner, W. Smith, V. Bonifay, B. Biri, and J. M. Suflita, Biofouling 30, 823 (2014).10.1080/08927014.2014.931379
37. J. I. Brauer, J. Sunner, and I. Beech"Mass Spectrometric Imaging Using Laser Ablation and Solvent Capture by Aspiration (LASCA)" J. Am. Soc. Mass Spectrom. (submitted).
38. http://dx.doi.org/10.1116/1.4906744E-BJIOBN-10-305501
39. P. G. A. Pedrioli et al., Nat. Biotechnol. 22, 1459 (2004).10.1038/nbt1031
40. D. J. Creek, A. Jankevics, K. E. Burgess, R. Breitling, and M. P. Barrett, Bioinformatics 28, 1048 (2012).10.1093/bioinformatics/bts069
41. R. Tautenhahn, C. Bottcher, and S. Neumann, BMC Bioinf. 9, 504 (2008).10.1186/1471-2105-9-504
42. R. A. Scheltema, A. Jankevics, R. C. Jansen, M. A. Swertz, and R. Breitling, Anal. Chem. 83, 2786 (2011).10.1021/ac2000994
43. ASTM Standard G1-03, Practice for Preparing, Cleaning, and Evaluating Corrosion Test Specimens, ASTM International, 2011.