-
1
-
-
79952411326
-
Preparation of protein samples for NMR structure, function, and small-molecule screening studies
-
T.B. Acton, R. Xiao, S. Anderson, J. Aramini, W.A. Buchwald, C. Ciccosanti, K. Conover, J. Everett, K. Hamilton, Y.J. Huang, and et al. Preparation of protein samples for NMR structure, function, and small-molecule screening studies Methods Enzymol. 493 2011 21 60
-
(2011)
Methods Enzymol.
, vol.493
, pp. 21-60
-
-
Acton, T.B.1
Xiao, R.2
Anderson, S.3
Aramini, J.4
Buchwald, W.A.5
Ciccosanti, C.6
Conover, K.7
Everett, J.8
Hamilton, K.9
Huang, Y.J.10
-
2
-
-
14244272868
-
PHENIX: building new software for automated crystallographic structure determination
-
P.D. Adams, R.W. Grosse-Kunstleve, L.W. Hung, T.R. Ioerger, A.J. McCoy, N.W. Moriarty, R.J. Read, J.C. Sacchettini, N.K. Sauter, and T.C. Terwilliger PHENIX: building new software for automated crystallographic structure determination Acta Crystallogr. D Biol. Crystallogr. 58 2002 1948 1954
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.W.3
Ioerger, T.R.4
McCoy, A.J.5
Moriarty, N.W.6
Read, R.J.7
Sacchettini, J.C.8
Sauter, N.K.9
Terwilliger, T.C.10
-
3
-
-
84898459926
-
19F NMR reveals multiple conformations at the dimer interface of the nonstructural protein 1 effector domain from influenza A virus
-
19F NMR reveals multiple conformations at the dimer interface of the nonstructural protein 1 effector domain from influenza A virus Structure 22 2014 515 525
-
(2014)
Structure
, vol.22
, pp. 515-525
-
-
Aramini, J.M.1
Hamilton, K.2
Ma, L.C.3
Swapna, G.V.4
Leonard, P.G.5
Ladbury, J.E.6
Krug, R.M.7
Montelione, G.T.8
-
4
-
-
77954257799
-
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
-
H. Ashkenazy, E. Erez, E. Martz, T. Pupko, and N. Ben-Tal ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids Nucleic Acids Res. 38 2010 W529 W533
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W529-W533
-
-
Ashkenazy, H.1
Erez, E.2
Martz, E.3
Pupko, T.4
Ben-Tal, N.5
-
5
-
-
63549111769
-
Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy
-
A. Bahrami, A.H. Assadi, J.L. Markley, and H.R. Eghbalnia Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy PLoS Comput. Biol. 5 2009 e1000307
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Bahrami, A.1
Assadi, A.H.2
Markley, J.L.3
Eghbalnia, H.R.4
-
6
-
-
0027250665
-
Primary structure effects on peptide group hydrogen exchange
-
Y. Bai, J.S. Milne, L. Mayne, and S.W. Englander Primary structure effects on peptide group hydrogen exchange Proteins 17 1993 75 86
-
(1993)
Proteins
, vol.17
, pp. 75-86
-
-
Bai, Y.1
Milne, J.S.2
Mayne, L.3
Englander, S.W.4
-
7
-
-
33847079676
-
Evaluating protein structures determined by structural genomics consortia
-
A. Bhattacharya, R. Tejero, and G.T. Montelione Evaluating protein structures determined by structural genomics consortia Proteins 66 2007 778 795
-
(2007)
Proteins
, vol.66
, pp. 778-795
-
-
Bhattacharya, A.1
Tejero, R.2
Montelione, G.T.3
-
8
-
-
70350340728
-
The role of dynamic conformational ensembles in biomolecular recognition
-
D.D. Boehr, R. Nussinov, and P.E. Wright The role of dynamic conformational ensembles in biomolecular recognition Nat. Chem. Biol. 5 2009 789 796
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 789-796
-
-
Boehr, D.D.1
Nussinov, R.2
Wright, P.E.3
-
9
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
A.T. Brünger, P.D. Adams, G.M. Clore, W.L. DeLano, P. Gros, R.W. Grosse-Kunstleve, J.S. Jiang, J. Kuszewski, M. Nilges, N.S. Pannu, and et al. Crystallography & NMR system: A new software suite for macromolecular structure determination Acta Crystallogr. D Biol. Crystallogr. 54 1998 905 921
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
11
-
-
34547592557
-
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
-
I.W. Davis, A. Leaver-Fay, V.B. Chen, J.N. Block, G.J. Kapral, X. Wang, L.W. Murray, W.B. Arendall 3rd, J. Snoeyink, J.S. Richardson, and D.C. Richardson MolProbity: all-atom contacts and structure validation for proteins and nucleic acids Nucleic Acids Res. 35 2007 W375 W383
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W375-W383
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
Wang, X.6
Murray, L.W.7
Arendall, W.B.8
Snoeyink, J.9
Richardson, J.S.10
Richardson, D.C.11
-
12
-
-
0029400480
-
NMRPipe: a multidimensional spectral processing system based on UNIX pipes
-
F. Delaglio, S. Grzesiek, G.W. Vuister, G. Zhu, J. Pfeifer, and A. Bax NMRPipe: a multidimensional spectral processing system based on UNIX pipes J. Biomol. NMR 6 1995 277 293
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
13
-
-
0029916726
-
Crystallization and preliminary X-ray analysis of the 9 kDa protein of the mouse signal recognition particle and the selenomethionyl-SRP9
-
S. Doublie, U. Kapp, A. Aberg, K. Brown, K. Strub, and S. Cusack Crystallization and preliminary X-ray analysis of the 9 kDa protein of the mouse signal recognition particle and the selenomethionyl-SRP9 FEBS Lett. 384 1996 219 221
-
(1996)
FEBS Lett.
, vol.384
, pp. 219-221
-
-
Doublie, S.1
Kapp, U.2
Aberg, A.3
Brown, K.4
Strub, K.5
Cusack, S.6
-
14
-
-
84892725030
-
Recent progress in the identification of BRAF inhibitors as anti-cancer agents
-
H.B. El-Nassan Recent progress in the identification of BRAF inhibitors as anti-cancer agents Eur. J. Med. Chem. 72 2014 170 205
-
(2014)
Eur. J. Med. Chem.
, vol.72
, pp. 170-205
-
-
El-Nassan, H.B.1
-
15
-
-
0029041347
-
Solution structure of the Ras-binding domain of c-Raf-1 and identification of its Ras interaction surface
-
S.D. Emerson, V.S. Madison, R.E. Palermo, D.S. Waugh, J.E. Scheffler, K.L. Tsao, S.E. Kiefer, S.P. Liu, and D.C. Fry Solution structure of the Ras-binding domain of c-Raf-1 and identification of its Ras interaction surface Biochemistry 34 1995 6911 6918
-
(1995)
Biochemistry
, vol.34
, pp. 6911-6918
-
-
Emerson, S.D.1
Madison, V.S.2
Palermo, R.E.3
Waugh, D.S.4
Scheffler, J.E.5
Tsao, K.L.6
Kiefer, S.E.7
Liu, S.P.8
Fry, D.C.9
-
17
-
-
0035875870
-
Ligand-induced structural changes to maltodextrin-binding protein as studied by solution NMR spectroscopy
-
J. Evenäs, V. Tugarinov, N.R. Skrynnikov, N.K. Goto, R. Muhandiram, and L.E. Kay Ligand-induced structural changes to maltodextrin-binding protein as studied by solution NMR spectroscopy J. Mol. Biol. 309 2001 961 974
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 961-974
-
-
Evenäs, J.1
Tugarinov, V.2
Skrynnikov, N.R.3
Goto, N.K.4
Muhandiram, R.5
Kay, L.E.6
-
18
-
-
0028282555
-
15N NMR relaxation
-
15N NMR relaxation Biochemistry 33 1994 5984 6003
-
(1994)
Biochemistry
, vol.33
, pp. 5984-6003
-
-
Farrow, N.A.1
Muhandiram, R.2
Singer, A.U.3
Pascal, S.M.4
Kay, C.M.5
Gish, G.6
Shoelson, S.E.7
Pawson, T.8
Forman-Kay, J.D.9
Kay, L.E.10
-
19
-
-
84902322316
-
Correlated motions are a fundamental property of β-sheets
-
R.B. Fenwick, L. Orellana, S. Esteban-Martin, M. Orozco, and X. Salvatella Correlated motions are a fundamental property of β-sheets Nat. Commun. 5 2014 4070
-
(2014)
Nat. Commun.
, vol.5
, pp. 4070
-
-
Fenwick, R.B.1
Orellana, L.2
Esteban-Martin, S.3
Orozco, M.4
Salvatella, X.5
-
20
-
-
84923853645
-
Allosteric effects of the oncogenic RasQ61L mutant on Raf-RBD
-
S.K. Fetics, H. Guterres, B.M. Kearney, G. Buhrman, B. Ma, R. Nussinov, and C. Mattos Allosteric effects of the oncogenic RasQ61L mutant on Raf-RBD Structure 23 2015 505 516
-
(2015)
Structure
, vol.23
, pp. 505-516
-
-
Fetics, S.K.1
Guterres, H.2
Kearney, B.M.3
Buhrman, G.4
Ma, B.5
Nussinov, R.6
Mattos, C.7
-
21
-
-
77954758621
-
What makes Ras an efficient molecular switch: a computational, biophysical, and structural study of Ras-GDP interactions with mutants of Raf
-
D. Filchtinski, O. Sharabi, A. Rüppel, I.R. Vetter, C. Herrmann, and J.M. Shifman What makes Ras an efficient molecular switch: a computational, biophysical, and structural study of Ras-GDP interactions with mutants of Raf J. Mol. Biol. 399 2010 422 435
-
(2010)
J. Mol. Biol.
, vol.399
, pp. 422-435
-
-
Filchtinski, D.1
Sharabi, O.2
Rüppel, A.3
Vetter, I.R.4
Herrmann, C.5
Shifman, J.M.6
-
22
-
-
84891782659
-
Pfam: the protein families database
-
R.D. Finn, A. Bateman, J. Clements, P. Coggill, R.Y. Eberhardt, S.R. Eddy, A. Heger, K. Hetherington, L. Holm, J. Mistry, and et al. Pfam: the protein families database Nucleic Acids Res. 42 2014 D222 D230
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
Heger, A.7
Hetherington, K.8
Holm, L.9
Mistry, J.10
-
23
-
-
34548819601
-
B- and C-RAF display essential differences in their binding to Ras: the isotype-specific N terminus of B-RAF facilitates Ras binding
-
A. Fischer, M. Hekman, J. Kuhlmann, I. Rubio, S. Wiese, and U.R. Rapp B- and C-RAF display essential differences in their binding to Ras: the isotype-specific N terminus of B-RAF facilitates Ras binding J. Biol. Chem. 282 2007 26503 26516
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 26503-26516
-
-
Fischer, A.1
Hekman, M.2
Kuhlmann, J.3
Rubio, I.4
Wiese, S.5
Rapp, U.R.6
-
24
-
-
34249763437
-
Backbone dynamics of ribonuclease T1 and its complex with 2'GMP studied by two-dimensional heteronuclear NMR spectroscopy
-
D. Fushman, R. Weisemann, H. Thuring, and H. Ruterjans Backbone dynamics of ribonuclease T1 and its complex with 2'GMP studied by two-dimensional heteronuclear NMR spectroscopy J. Biomol. NMR 4 1994 61 78
-
(1994)
J. Biomol. NMR
, vol.4
, pp. 61-78
-
-
Fushman, D.1
Weisemann, R.2
Thuring, H.3
Ruterjans, H.4
-
25
-
-
2542445427
-
ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information
-
F. Glaser, T. Pupko, I. Paz, R.E. Bell, D. Bechor-Shental, E. Martz, and N. Ben-Tal ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information Bioinformatics 19 2003 163 164
-
(2003)
Bioinformatics
, vol.19
, pp. 163-164
-
-
Glaser, F.1
Pupko, T.2
Paz, I.3
Bell, R.E.4
Bechor-Shental, D.5
Martz, E.6
Ben-Tal, N.7
-
26
-
-
0043245780
-
Insights into protein-protein binding by binding free energy calculation and free energy decomposition for the Ras-Raf and Ras-RalGDS complexes
-
H. Gohlke, C. Kiel, and D.A. Case Insights into protein-protein binding by binding free energy calculation and free energy decomposition for the Ras-Raf and Ras-RalGDS complexes J. Mol. Biol. 330 2003 891 913
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 891-913
-
-
Gohlke, H.1
Kiel, C.2
Case, D.A.3
-
27
-
-
3042806330
-
Change in protein flexibility upon complex formation: analysis of Ras-Raf using molecular dynamics and a molecular framework approach
-
H. Gohlke, L.A. Kuhn, and D.A. Case Change in protein flexibility upon complex formation: analysis of Ras-Raf using molecular dynamics and a molecular framework approach Proteins 56 2004 322 337
-
(2004)
Proteins
, vol.56
, pp. 322-337
-
-
Gohlke, H.1
Kuhn, L.A.2
Case, D.A.3
-
28
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
P. Güntert, C. Mumenthaler, and K. Wüthrich Torsion angle dynamics for NMR structure calculation with the new program DYANA J. Mol. Biol. 273 1997 283 298
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 283-298
-
-
Güntert, P.1
Mumenthaler, C.2
Wüthrich, K.3
-
29
-
-
0026095584
-
Determination of macromolecular structures from anomalous diffraction of synchrotron radiation
-
W.A. Hendrickson Determination of macromolecular structures from anomalous diffraction of synchrotron radiation Science 254 1991 51 58
-
(1991)
Science
, vol.254
, pp. 51-58
-
-
Hendrickson, W.A.1
-
30
-
-
0036308102
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
-
T. Herrmann, P. Güntert, and K. Wüthrich Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA J. Mol. Biol. 319 2002 209 227
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 209-227
-
-
Herrmann, T.1
Güntert, P.2
Wüthrich, K.3
-
31
-
-
77954288774
-
Dali server: conservation mapping in 3D
-
L. Holm, and P. Rosenström Dali server: conservation mapping in 3D Nucleic Acids Res. 38 2010 W545 W549
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W545-W549
-
-
Holm, L.1
Rosenström, P.2
-
32
-
-
27744480205
-
Structural biology: proteins flex to function
-
Y.J. Huang, and G.T. Montelione Structural biology: proteins flex to function Nature 438 2005 36 37
-
(2005)
Nature
, vol.438
, pp. 36-37
-
-
Huang, Y.J.1
Montelione, G.T.2
-
33
-
-
13644252170
-
Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics
-
Y.J. Huang, R. Powers, and G.T. Montelione Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics J. Am. Chem. Soc. 127 2005 1665 1674
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 1665-1674
-
-
Huang, Y.J.1
Powers, R.2
Montelione, G.T.3
-
34
-
-
55049132861
-
Targeting the human cancer pathway protein interaction network by structural genomics
-
Y.J. Huang, D. Hang, L.J. Lu, L. Tong, M.B. Gerstein, and G.T. Montelione Targeting the human cancer pathway protein interaction network by structural genomics Mol. Cell Proteomics 7 2008 2048 2060
-
(2008)
Mol. Cell Proteomics
, vol.7
, pp. 2048-2060
-
-
Huang, Y.J.1
Hang, D.2
Lu, L.J.3
Tong, L.4
Gerstein, M.B.5
Montelione, G.T.6
-
37
-
-
0035711194
-
Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency
-
R.B. Kapust, J. Tözsér, J.D. Fox, D.E. Anderson, S. Cherry, T.D. Copeland, and D.S. Waugh Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency Protein Eng. 14 2001 993 1000
-
(2001)
Protein Eng.
, vol.14
, pp. 993-1000
-
-
Kapust, R.B.1
Tözsér, J.2
Fox, J.D.3
Anderson, D.E.4
Cherry, S.5
Copeland, T.D.6
Waugh, D.S.7
-
38
-
-
0024449503
-
15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease
-
15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease Biochemistry 28 1989 8972 8979
-
(1989)
Biochemistry
, vol.28
, pp. 8972-8979
-
-
Kay, L.E.1
Torchia, D.A.2
Bax, A.3
-
40
-
-
0028204451
-
Solution structure and dynamics of ras p21×GDP determined by heteronuclear three- and four-dimensional NMR spectroscopy
-
P.J. Kraulis, P.J. Domaille, S.L. Campbell-Burk, T. Van Aken, and E.D. Laue Solution structure and dynamics of ras p21×GDP determined by heteronuclear three- and four-dimensional NMR spectroscopy Biochemistry 33 1994 3515 3531
-
(1994)
Biochemistry
, vol.33
, pp. 3515-3531
-
-
Kraulis, P.J.1
Domaille, P.J.2
Campbell-Burk, S.L.3
Van Aken, T.4
Laue, E.D.5
-
43
-
-
84929077789
-
Regulation of RAF protein kinases in ERK signalling
-
H. Lavoie, and M. Therrien Regulation of RAF protein kinases in ERK signalling Nat. Rev. Mol. Cell Biol 16 2015 281 298
-
(2015)
Nat. Rev. Mol. Cell Biol
, vol.16
, pp. 281-298
-
-
Lavoie, H.1
Therrien, M.2
-
44
-
-
84922783539
-
Dimerization-induced allostery in protein kinase regulation
-
H. Lavoie, J.J. Li, N. Thevakumaran, M. Therrien, and F. Sicheri Dimerization-induced allostery in protein kinase regulation Trends Biochem. Sci. 39 2014 475 486
-
(2014)
Trends Biochem. Sci.
, vol.39
, pp. 475-486
-
-
Lavoie, H.1
Li, J.J.2
Thevakumaran, N.3
Therrien, M.4
Sicheri, F.5
-
45
-
-
0037441524
-
Refinement of protein structures in explicit solvent
-
J.P. Linge, M.A. Williams, C.A. Spronk, A.M. Bonvin, and M. Nilges Refinement of protein structures in explicit solvent Proteins 50 2003 496 506
-
(2003)
Proteins
, vol.50
, pp. 496-506
-
-
Linge, J.P.1
Williams, M.A.2
Spronk, C.A.3
Bonvin, A.M.4
Nilges, M.5
-
46
-
-
0037032835
-
The protein kinase complement of the human genome
-
G. Manning, D.B. Whyte, R. Martinez, T. Hunter, and S. Sudarsanam The protein kinase complement of the human genome Science 298 2002 1912 1934
-
(2002)
Science
, vol.298
, pp. 1912-1934
-
-
Manning, G.1
Whyte, D.B.2
Martinez, R.3
Hunter, T.4
Sudarsanam, S.5
-
47
-
-
79960064432
-
Raf family kinases: old dogs have learned new tricks
-
D. Matallanas, M. Birtwistle, D. Romano, A. Zebisch, J. Rauch, A. von Kriegsheim, and W. Kolch Raf family kinases: old dogs have learned new tricks Genes Cancer 2 2011 232 260
-
(2011)
Genes Cancer
, vol.2
, pp. 232-260
-
-
Matallanas, D.1
Birtwistle, M.2
Romano, D.3
Zebisch, A.4
Rauch, J.5
Von Kriegsheim, A.6
Kolch, W.7
-
48
-
-
0025117674
-
Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteins
-
M.V. Milburn, L. Tong, A.M. deVos, A. Brünger, Z. Yamaizumi, S. Nishimura, and S.H. Kim Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteins Science 247 1990 939 945
-
(1990)
Science
, vol.247
, pp. 939-945
-
-
Milburn, M.V.1
Tong, L.2
DeVos, A.M.3
Brünger, A.4
Yamaizumi, Z.5
Nishimura, S.6
Kim, S.H.7
-
49
-
-
0034923123
-
Automatic determination of protein backbone resonance assignments from triple resonance nuclear magnetic resonance data
-
H.N. Moseley, D. Monleon, and G.T. Montelione Automatic determination of protein backbone resonance assignments from triple resonance nuclear magnetic resonance data Methods Enzymol. 339 2001 91 108
-
(2001)
Methods Enzymol.
, vol.339
, pp. 91-108
-
-
Moseley, H.N.1
Monleon, D.2
Montelione, G.T.3
-
51
-
-
0029107760
-
The 2.2 Å crystal structure of the Ras-binding domain of the serine/threonine kinase c-Raf1 in complex with Rap1A and a GTP analogue
-
N. Nassar, G. Horn, C. Herrmann, A. Scherer, F. McCormick, and A. Wittinghofer The 2.2 Å crystal structure of the Ras-binding domain of the serine/threonine kinase c-Raf1 in complex with Rap1A and a GTP analogue Nature 375 1995 554 560
-
(1995)
Nature
, vol.375
, pp. 554-560
-
-
Nassar, N.1
Horn, G.2
Herrmann, C.3
Scherer, A.4
McCormick, F.5
Wittinghofer, A.6
-
52
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Z. Otwinowski, and W. Minor Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 276 1997 307 326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
53
-
-
84904790793
-
Deciphering key features in protein structures with the new ENDscript server
-
X. Robert, and P. Gouet Deciphering key features in protein structures with the new ENDscript server Nucleic Acids Res. 42 2014 W320 W324
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. W320-W324
-
-
Robert, X.1
Gouet, P.2
-
54
-
-
77956124562
-
RAF protein-serine/threonine kinases: structure and regulation
-
R. Roskoski Jr. RAF protein-serine/threonine kinases: structure and regulation Biochem. Biophys. Res. Commun. 399 2010 313 317
-
(2010)
Biochem. Biophys. Res. Commun.
, vol.399
, pp. 313-317
-
-
Roskoski, R.1
-
55
-
-
84903191938
-
Elucidating the mode of action of a typical Ras state 1(T) inhibitor
-
I.C. Rosnizeck, D. Filchtinski, R.P. Lopes, B. Kieninger, C. Herrmann, H.R. Kalbitzer, and M. Spoerner Elucidating the mode of action of a typical Ras state 1(T) inhibitor Biochemistry 53 2014 3867 3878
-
(2014)
Biochemistry
, vol.53
, pp. 3867-3878
-
-
Rosnizeck, I.C.1
Filchtinski, D.2
Lopes, R.P.3
Kieninger, B.4
Herrmann, C.5
Kalbitzer, H.R.6
Spoerner, M.7
-
56
-
-
20444393525
-
Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds
-
P. Schanda, and B. Brutscher Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds J. Am. Chem. Soc. 127 2005 8014 8015
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 8014-8015
-
-
Schanda, P.1
Brutscher, B.2
-
58
-
-
84881450365
-
NMR paves the way for atomic level descriptions of sparsely populated, transiently formed biomolecular conformers
-
A. Sekhar, and L.E. Kay NMR paves the way for atomic level descriptions of sparsely populated, transiently formed biomolecular conformers Proc. Natl. Acad. Sci. USA 110 2013 12867 12874
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 12867-12874
-
-
Sekhar, A.1
Kay, L.E.2
-
59
-
-
68349093958
-
TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts
-
Y. Shen, F. Delaglio, G. Cornilescu, and A. Bax TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts J. Biomol. NMR 44 2009 213 223
-
(2009)
J. Biomol. NMR
, vol.44
, pp. 213-223
-
-
Shen, Y.1
Delaglio, F.2
Cornilescu, G.3
Bax, A.4
-
60
-
-
80054078476
-
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
-
F. Sievers, A. Wilm, D. Dineen, T.J. Gibson, K. Karplus, W. Li, R. Lopez, H. McWilliam, M. Remmert, J. Söding, and et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega Mol. Syst. Biol. 7 2011 539
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 539
-
-
Sievers, F.1
Wilm, A.2
Dineen, D.3
Gibson, T.J.4
Karplus, K.5
Li, W.6
Lopez, R.7
McWilliam, H.8
Remmert, M.9
Söding, J.10
-
61
-
-
1842832382
-
Preparation of GTPases for structural and biophysical analysis
-
S.J. Smith, and K. Rittinger Preparation of GTPases for structural and biophysical analysis Methods Mol. Biol. 189 2002 13 24
-
(2002)
Methods Mol. Biol.
, vol.189
, pp. 13-24
-
-
Smith, S.J.1
Rittinger, K.2
-
62
-
-
84894039820
-
Integrated RAS signaling defined by parallel NMR detection of effectors and regulators
-
M.J. Smith, and M. Ikura Integrated RAS signaling defined by parallel NMR detection of effectors and regulators Nat. Chem. Biol. 10 2014 223 230
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 223-230
-
-
Smith, M.J.1
Ikura, M.2
-
63
-
-
84875233112
-
NMR-based functional profiling of RASopathies and oncogenic RAS mutations
-
M.J. Smith, B.G. Neel, and M. Ikura NMR-based functional profiling of RASopathies and oncogenic RAS mutations Proc. Natl. Acad. Sci. USA 110 2013 4574 4579
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 4574-4579
-
-
Smith, M.J.1
Neel, B.G.2
Ikura, M.3
-
66
-
-
78650054960
-
Conformational states of human rat sarcoma (Ras) protein complexed with its natural ligand GTP and their role for effector interaction and GTP hydrolysis
-
M. Spoerner, C. Hozsa, J.A. Poetzl, K. Reiss, P. Ganser, M. Geyer, and H.R. Kalbitzer Conformational states of human rat sarcoma (Ras) protein complexed with its natural ligand GTP and their role for effector interaction and GTP hydrolysis J. Biol. Chem. 285 2010 39768 39778
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 39768-39778
-
-
Spoerner, M.1
Hozsa, C.2
Poetzl, J.A.3
Reiss, K.4
Ganser, P.5
Geyer, M.6
Kalbitzer, H.R.7
-
69
-
-
0033548146
-
Nuclear magnetic resonance and molecular dynamics studies on the interactions of the Ras-binding domain of Raf-1 with wild-type and mutant Ras proteins
-
T. Terada, Y. Ito, M. Shirouzu, M. Tateno, K. Hashimoto, T. Kigawa, T. Ebisuzaki, K. Takio, T. Shibata, S. Yokoyama, and et al. Nuclear magnetic resonance and molecular dynamics studies on the interactions of the Ras-binding domain of Raf-1 with wild-type and mutant Ras proteins J. Mol. Biol. 286 1999 219 232
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 219-232
-
-
Terada, T.1
Ito, Y.2
Shirouzu, M.3
Tateno, M.4
Hashimoto, K.5
Kigawa, T.6
Ebisuzaki, T.7
Takio, K.8
Shibata, T.9
Yokoyama, S.10
-
70
-
-
84925283093
-
Crystal structure of a BRAF kinase domain monomer explains basis for allosteric regulation
-
N. Thevakumaran, H. Lavoie, D.A. Critton, A. Tebben, A. Marinier, F. Sicheri, and M. Therrien Crystal structure of a BRAF kinase domain monomer explains basis for allosteric regulation Nat. Struct. Mol. Biol. 22 2015 37 43
-
(2015)
Nat. Struct. Mol. Biol.
, vol.22
, pp. 37-43
-
-
Thevakumaran, N.1
Lavoie, H.2
Critton, D.A.3
Tebben, A.4
Marinier, A.5
Sicheri, F.6
Therrien, M.7
-
72
-
-
84864651001
-
Protein activity regulation by conformational entropy
-
S.R. Tzeng, and C.G. Kalodimos Protein activity regulation by conformational entropy Nature 488 2012 236 240
-
(2012)
Nature
, vol.488
, pp. 236-240
-
-
Tzeng, S.R.1
Kalodimos, C.G.2
-
73
-
-
84873526287
-
The dark energy of proteins comes to light: conformational entropy and its role in protein function revealed by NMR relaxation
-
A.J. Wand The dark energy of proteins comes to light: conformational entropy and its role in protein function revealed by NMR relaxation Curr. Opin. Struct. Biol. 23 2013 75 81
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 75-81
-
-
Wand, A.J.1
|