메뉴 건너뛰기




Volumn 40, Issue W1, 2012, Pages

RPF: A quality assessment tool for protein NMR structures

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALGORITHM; ARTICLE; CALCULATION; COMPARATIVE STUDY; COMPUTER PROGRAM; CONTROLLED STUDY; CORRELATION ANALYSIS; DISCRIMINATION POWER SCORE; INTERNET; NUCLEAR MAGNETIC RESONANCE; NUCLEAR OVERHAUSER EFFECT; ONLINE SYSTEM; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE; QUALITY CONTROL; SCORING SYSTEM; THREE DIMENSIONAL IMAGING; WEB SERVER;

EID: 84864494586     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks373     Document Type: Article
Times cited : (43)

References (17)
  • 2
    • 0033027208 scopus 로고    scopus 로고
    • Completeness of noes in protein structure: A statistical analysis of NMR
    • Doreleijers, J.F., Raves, M.L., Rullmann, T. and Kaptein, R. (1999) Completeness of NOEs in protein structure: a statistical analysis of NMR. J. Biomol. NMR, 14, 123-132.
    • (1999) J. Biomol. NMR , vol.14 , pp. 123-132
    • Doreleijers, J.F.1    Raves, M.L.2    Rullmann, T.3    Kaptein, R.4
  • 3
    • 13644252170 scopus 로고    scopus 로고
    • Protein NMR recall, precision, and F-measure scores (RPF scores): Structure quality assessment measures based on information retrieval statistics
    • Huang, Y.J., Powers, R. and Montelione, G.T. (2005) Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics. J. Am. Chem. Soc., 127, 1665-1674.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 1665-1674
    • Huang, Y.J.1    Powers, R.2    Montelione, G.T.3
  • 4
    • 33847079676 scopus 로고    scopus 로고
    • Evaluating protein structures determined by structural genomics consortia
    • Bhattacharya, A., Tejero, R. and Montelione, G.T. (2007) Evaluating protein structures determined by structural genomics consortia. Proteins, 66, 778-795.
    • (2007) Proteins , vol.66 , pp. 778-795
    • Bhattacharya, A.1    Tejero, R.2    Montelione, G.T.3
  • 6
    • 84862970421 scopus 로고    scopus 로고
    • Protein structure validation by generalized linear model root-mean-square deviation prediction
    • Bagaria, A., Jaravine, V., Huang, Y.J., Montelione, G.T. and Guntert, P. (2012) Protein structure validation by generalized linear model root-mean-square deviation prediction. Protein Sci., 21, 229-238.
    • (2012) Protein Sci. , vol.21 , pp. 229-238
    • Bagaria, A.1    Jaravine, V.2    Huang, Y.J.3    Montelione, G.T.4    Guntert, P.5
  • 9
    • 0030767485 scopus 로고    scopus 로고
    • VERIFY3D: Assessment of protein models with three-dimensional profiles
    • Eisenberg, D., Luthy, R. and Bowie, J.U. (1997) VERIFY3D: assessment of protein models with three-dimensional profiles. Methods Enzymol., 277, 396-404.
    • (1997) Methods Enzymol. , vol.277 , pp. 396-404
    • Eisenberg, D.1    Luthy, R.2    Bowie, J.U.3
  • 10
    • 0027490731 scopus 로고
    • Recognition of errors in three-dimensional structures of proteins
    • Sippl, M.J. (1993) Recognition of errors in three-dimensional structures of proteins. Proteins, 17, 355-362.
    • (1993) Proteins , vol.17 , pp. 355-362
    • Sippl, M.J.1
  • 11
    • 0030339738 scopus 로고    scopus 로고
    • AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR
    • Laskowski, R.A., Rullmannn, J.A., MacArthur, M.W., Kaptein, R. and Thornton, J.M. (1996) AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. J. Biomol. NMR, 8, 477-486.
    • (1996) J. Biomol. NMR , vol.8 , pp. 477-486
    • Laskowski, R.A.1    Rullmannn, J.A.2    MacArthur, M.W.3    Kaptein, R.4    Thornton, J.M.5
  • 12
    • 3242886389 scopus 로고    scopus 로고
    • MOLPROBITY: Structure validation and all-atom contact analysis for nucleic acids and their complexes
    • Davis, I.W., Murray, L.W., Richardson, J.S. and Richardson, D.C. (2004) MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucleic Acids Res., 32, W615-W619.
    • (2004) Nucleic Acids Res. , vol.32
    • Davis, I.W.1    Murray, L.W.2    Richardson, J.S.3    Richardson, D.C.4
  • 14
    • 0016557674 scopus 로고
    • Multidimensional binary search trees used for associative searching
    • Bentley, J.L. (1975) Multidimensional binary search trees used for associative searching. Commun. ACM, 18, 509-517.
    • (1975) Commun. ACM , vol.18 , pp. 509-517
    • Bentley, J.L.1
  • 16
    • 0042622381 scopus 로고    scopus 로고
    • LGA: A method for finding 3D similarities in protein structures
    • Zemla, A. (2003) LGA: a method for finding 3d similarities in protein structures. Nucleic Acids Res., 31, 3370-3374.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3370-3374
    • Zemla, A.1
  • 17
    • 36749050816 scopus 로고    scopus 로고
    • Domain definition and target classification for CASP7
    • Clarke, N.D., Ezkurdia, I., Kopp, J., Read, R.J., Schwede, T. and Tress, M. (2007) Domain definition and target classification for CASP7. Proteins, 69(Suppl. 8), 10-18.
    • (2007) Proteins , vol.69 , Issue.SUPPL. 8 , pp. 10-18
    • Clarke, N.D.1    Ezkurdia, I.2    Kopp, J.3    Read, R.J.4    Schwede, T.5    Tress, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.