Growth-defence balance in grass biomass production: The role of jasmonates

Journal of Experimental Botany

Volumn 66, Issue 14, 2015, Pages 4165-4176

  Shyu, Christine ^a   Brutnell, Thomas P ^a  

^a DONALD DANFORTH PLANT SCIENCE CENTER   (United States)

Author keywords

Bioenergy grasses; Biotic stress; Herbivory; Jasmonate; Maize; Setaria viridis; Trade off

Indexed keywords

CYCLOPENTANE DERIVATIVE; JASMONIC ACID; OXYLIPIN; TRANSCRIPTION FACTOR;

BIOMASS; GROWTH, DEVELOPMENT AND AGING; HERBIVORY; METABOLISM; POACEAE; SIGNAL TRANSDUCTION;

BIOMASS; CYCLOPENTANES; HERBIVORY; OXYLIPINS; POACEAE; SIGNAL TRANSDUCTION; TRANSCRIPTION FACTORS;

EID: 84938427236     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erv011     Document Type: Review

References (142)

1. Acosta IF, Laparra H, Romero SP, Schmelz E, Hamberg M, Mottinger JP, Moreno MA, Dellaporta SL. 2009. tasselseed1 is a lipoxygenase affecting jasmonic acid signaling in sex determination of maize. Science 323, 262-265.
2. Aldridge D, Galt S, Giles D, Turner W. 1971. Metabolites of Lasiodiplodia theobromae. Journal of the Chemical Society C: Organic, 1623-1627.
3. Attaran E, Major IT, Cruz JA, Rosa BA, Koo AJ, Chen J, Kramer DM, He SY, Howe GA. 2014. Temporal dynamics of growth and photosynthesis suppression in response to jasmonate signaling. Plant Physiology 165, 1302-1314.
4. Bai Y, Meng Y, Huang D, Qi Y, Chen M. 2011. Origin and evolutionary analysis of the plant-specifc TIFY transcription factor family. Genomics 98, 128-136.
5. Ballare CL. 2014. Light regulation of plant defense. Annual Review of Plant Biology 65, 335-363.
6. Ballare CL, Mazza CA, Austin AT, Pierik R. 2012. Canopy light and plant health. Plant Physiology 160, 145-155.
7. Barling A, Swaminathan K, Mitros T, et al. 2013. A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomes. BMC Genomics 14, 864.
8. Bell DL, Galloway L F. 2008. Population differentiation for plasticity to light in an annual herb: adaptation and cost. American Journal of Botany 95, 59-65.
9. Benatti MR, Penning BW, Carpita NC, McCann MC. 2012. We are good to grow: dynamic integration of cell wall architecture with the machinery of growth. Frontiers in Plant Science 3, 187.
10. Bennetzen JL, Schmutz J, Wang H, et al. 2012. Reference genome sequence of the model plant Setaria. Nature Biotechnology 30, 555-561.
11. Bilgin DD, Zavala JA, Zhu J, Clough SJ, Ort DR, DeLucia EH. 2010. Biotic stress globally downregulates photosynthesis genes. Plant, Cell and Environment 33, 1597-1613.
12. Bosak EJ, Seidl-Adams IH, Zhu J, Tumlinson JH. 2013. Maize developmental stage affects indirect and direct defense expression. Environmental Entomology 42, 1309-1321.
13. Bragg JN, Anderton A, Nieu R, Vogel JP. 2015. Brachypodium distachyon. Methods in Molecular Biology 1223, 17-33.
14. Browse J. 2009. Jasmonate passes muster: a receptor and targets for the defense hormone. Annual Review of Plant Biology 60, 183-205.
15. Brutnell TP, Wang L, Swartwood K, Goldschmidt A, Jackson D, Zhu XG, Kellogg E, Van Eck J. 2010. Setaria viridis: a model for C4 photosynthesis. The Plant Cell 22, 2537-2544.
16. Cai Q, Yuan Z, Chen M, Yin C, Luo Z, Zhao X, Liang W, Hu J, Zhang D. 2014. Jasmonic acid regulates spikelet development in rice. Nature Communications 5, 3476.
17. Campos ML, Kang JH, Howe GA. 2014. Jasmonate-triggered plant immunity. Journal of Chemical Ecology 40, 657-675.
18. Cargnel MD, Demkura PV, Ballare CL. 2014. Linking phytochrome to plant immunity: low red:far-red ratios increase Arabidopsis susceptibility to Botrytis cinerea by reducing the biosynthesis of indolic glucosinolates and camalexin. New Phytologist 204, 342-354.
19. Carpita NC. 1996. Structure and biogenesis of the cell walls of grasses. Annual Review of Plant Physiology and Plant Molecular Biology 47, 445-476.
20. Carpita NC, Gibeaut DM. 1993. Structural models of primary cell walls in fowering plants: consistency of molecular structure with the physical properties of the walls during growth. The Plant Journal 3, 1-30.
21. Cerrudo I, Keller MM, Cargnel MD, Demkura PV, de Wit M, Patitucci MS, Pierik R, Pieterse CM, Ballare CL. 2012. Low red/far-red ratios reduce Arabidopsis resistance to Botrytis cinerea and jasmonate responses via a COI1-JAZ10-dependent, salicylic acid-independent mechanism. Plant Physiology 158, 2042-2052.
22. Chen Q, Sun J, Zhai Q, et al. 2011. The basic helix-loop-helix transcription factor MYC2 directly represses PLETHORA expression during jasmonate-mediated modulation of the root stem cell niche in Arabidopsis. The Plant Cell 23, 3335-3352.
23. Cheng WN, Lei JX, Rooney WL, Liu TX, Zhu-Salzman K. 2013. High basal defense gene expression determines sorghum resistance to the whorl-feeding insect southwestern corn borer. Insect Science 20, 307-317.
24. Chico JM, Chini A, Fonseca S, Solano R. 2008. JAZ repressors set the rhythm in jasmonate signaling. Current Opinion in Plant Biology 11, 486-494.
25. Chico JM, Fernandez-Barbero G, Chini A, Fernandez-Calvo P, Diez-Diaz M, Solano R. 2014. Repression of jasmonate-dependent defenses by shade involves differential regulation of protein stability of MYC transcription factors and their JAZ repressors in Arabidopsis. The Plant Cell 26, 1967-1980.
26. Chini A, Fonseca S, Fernandez G, et al. 2007. The JAZ family of repressors is the missing link in jasmonate signalling. Nature 448, 666-671.
27. Christensen SA, Nemchenko A, Borrego E, et al. 2013. The maize lipoxygenase, ZmLOX10, mediates green leaf volatile, jasmonate and herbivore-induced plant volatile production for defense against insect attack. The Plant Journal 74, 59-73.
28. Christensen SA, Nemchenko A, Park YS, et al. 2014. The novel monocot-specifc 9-lipoxygenase ZmLOX12 is required to mount an effective jasmonate-mediated defense against Fusarium verticillioides in maize. Molecular Plant-Microbe Interactions 27, 1263-1276.
29. Chung HS, Cooke TF, Depew CL, Patel LC, Ogawa N, Kobayashi Y, Howe GA. 2010. Alternative splicing expands the repertoire of dominant JAZ repressors of jasmonate signaling. The Plant Journal 63, 613-622.
30. Chung HS, Howe GA. 2009. A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis. The Plant Cell 21, 131-145.
31. Chung HS, Koo AJ, Gao X, Jayanty S, Thines B, Jones AD, Howe GA. 2008. Regulation and function of Arabidopsis JASMONATE ZIM-domain genes in response to wounding and herbivory. Plant Physiology 146, 952-964.
32. Coley PD, Bryant JP, Chapin FS 3rd. 1985. Resource availability and plant antiherbivore defense. Science 230, 895-899.
33. Cooper WR, Jia L, Goggin L. 2005. Effects of jasmonate-induced defenses on root-knot nematode infection of resistant and susceptible tomato cultivars. Journal of Chemical Ecology 31, 1953-1967.
34. Creelman RA, Mullet JE. 1997. Biosynthesis and action of jasmonates in plants. Annu Rev Plant Biol 48, 355-381.
35. Demianski AJ, Chung KM, Kunkel BN. 2012. Analysis of Arabidopsis JAZ gene expression during Pseudomonas syringae pathogenesis. Molecular Plant Pathology 13, 46-57.
36. De Vleesschauwer D, Gheysen G, Hofte M. 2013. Hormone defense networking in rice: tales from a different world. Trends in Plant Science 18, 555-565.
37. de Wit M, Spoel SH, Sanchez-Perez GF, Gommers CM, Pieterse CM, Voesenek LA, Pierik R. 2013. Perception of low red:far-red ratio compromises both salicylic acid-and jasmonic acid-dependent pathogen defences in Arabidopsis. The Plant Journal 75, 90-103.
38. Dill A, Jung HS, Sun T P. 2001. The DELLA motif is essential for gibberellin-induced degradation of RGA. Proceedings of the National Academy of Sciences, USA 98, 14162-14167.
39. Dill A, Thomas SG, Hu J, Steber CM, Sun TP. 2004. The Arabidopsis F-box protein SLEEPY1 targets gibberellin signaling repressors for gibberellin-induced degradation. The Plant Cell 16, 1392-1405.
40. Dorn LA, Pyle EH, Schmitt J. 2000. Plasticity to light cues and resources in Arabidopsis thaliana: testing for adaptive value and costs. Evolution 54, 1982-1994.
41. Engelberth J, Contreras CF, Viswanathan S. 2012. Transcriptional analysis of distant signaling induced by insect elicitors and mechanical wounding in Zea mays. PLoS One 7, e34855.
42. Engelberth J, Seidl-Adams I, Schultz JC, Tumlinson JH. 2007. Insect elicitors and exposure to green leafy volatiles differentially upregulate major octadecanoids and transcripts of 12-oxo phytodienoic acid reductases in Zea mays. Molecular Plant-Microbe Interactions 20, 707-716.
43. Facette MR, Shen Z, Bjornsdottir FR, Briggs SP, Smith LG. 2013. Parallel proteomic and phosphoproteomic analyses of successive stages of maize leaf development. The Plant Cell 25, 2798-2812.
44. Fan M, Bai MY, Kim JG, et al. 2014. The bHLH transcription factor HBI1 mediates the trade-off between growth and pathogen-associated molecular pattern-triggered immunity in Arabidopsis. The Plant Cell 26, 828-841.
45. FAO Statistical Yearbook. 2013. World food and agriculture. http://www. fao.org/docrep/018/i3107e/i3107e00.htm
46. Fernandez-Calvo P, Chini A, Fernandez-Barbero G, et al. 2011. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant Cell 23, 701-715.
47. Feys B, Benedetti CE, Penfold CN, Turner JG. 1994. Arabidopsis mutants selected for resistance to the phytotoxin coronatine are male sterile, insensitive to methyl jasmonate, and resistant to a bacterial pathogen. The Plant Cell 6, 751-759.
48. Figueroa P, Browse J. 2012. The Arabidopsis JAZ2 promoter contains a G-Box and thymidine-rich module that are necessary and suffcient for jasmonate-dependent activation by MYC transcription factors and repression by JAZ proteins. Plant and Cell Physiology 53, 330-343.
49. Fonseca S, Chini A, Hamberg M, Adie B, Porzel A, Kramell R, Miersch O, Wasternack C, Solano R. 2009. (+)-7-iso-Jasmonoyl-l-isoleucine is the endogenous bioactive jasmonate. Nature Chemical Biology 5, 344-350.
50. Friskop A, Kinzer K, McConnell M, Liu Z, Korus K, Timmerman A, Jackson T. 2014. First report of Goss's bacterial leaf blight and wilt of corn caused by Clavibacter michiganensis subsp. nebraskensis in North Dakota. Plant Disease 98, 1739-1739.
51. Gao X, Brodhagen M, Isakeit T, Brown SH, Gobel C, Betran J, Feussner I, Keller NP, Kolomiets MV. 2009. Inactivation of the lipoxygenase ZmLOX3 increases susceptibility of maize to Aspergillus spp. Molecular Plant-Microbe Interactions 22, 222-231.
52. Gao X, Starr J, Gobel C, Engelberth J, Feussner I, Tumlinson J, Kolomiets M. 2008. Maize 9-lipoxygenase ZmLOX3 controls development, root-specifc expression of defense genes, and resistance to root-knot nematodes. Molecular Plant-Microbe Interactions 21, 98-109.
53. Gfeller A, Dubugnon L, Liechti R, Farmer EE. 2010. Jasmonate biochemical pathway. Science Signaling 3, cm3.
54. Giri AP, Wunsche H, Mitra S, Zavala JA, Muck A, Svatos A, Baldwin I T. 2006. Molecular interactions between the specialist herbivore Manduca sexta (Lepidoptera, Sphingidae) and its natural host Nicotiana attenuata. VII. Changes in the plant's proteome. Plant Physiology 142, 1621-1641.
55. Greenup A, Peacock WJ, Dennis ES, Trevaskis B. 2009. The molecular biology of seasonal fowering-responses in Arabidopsis and the cereals. Annnals of Botany 103, 1165-1172.
56. Grewal RK, Gupta S, Das S. 2012. Xanthomonas oryzae pv oryzae triggers immediate transcriptomic modulations in rice. BMC Genomics 13, 49.
57. Hause B, Stenzel I, Miersch O, Maucher H, Kramell R, Ziegler J, Wasternack C. 2000. Tissue-specifc oxylipin signature of tomato fowers: allene oxide cyclase is highly expressed in distinct fower organs and vascular bundles. The Plant Journal 24, 113-126.
58. He G, Tarui Y, Iino M. 2005. A novel receptor kinase involved in jasmonate-mediated wound and phytochrome signaling in maize coleoptiles. Plant and Cell Physiology 46, 870-883.
59. Heitz T, Widemann E, Lugan R, et al. 2012. Cytochromes P450 CYP94C1 and CYP94B3 catalyze two successive oxidation steps of plant hormone Jasmonoyl-isoleucine for catabolic turnover. Journal of Biological Chemistry 287, 6296-6306.
60. Herms DA, Mattson WJ. 1992. The dilemma of plants: to grow or defend. Quarterly Review of Biology 67, 283-335.
61. Hong GJ, Xue XY, Mao YB, Wang LJ, Chen XY. 2012. Arabidopsis MYC2 interacts with DELLA proteins in regulating sesquiterpene synthase gene expression. The Plant Cell 24, 2635-2648.
62. Hou X, Ding L, Yu H. 2013. Crosstalk between GA and JA signaling mediates plant growth and defense. Plant Cell Reports 32, 1067-1074.
63. Howe GA, Jander G. 2008. Plant immunity to insect herbivores. Annual Review of Plant Biology 59, 41-66.
64. Hu P, Zhou W, Cheng Z, Fan M, Wang L, Xie D. 2013. JAV1 controls jasmonate-regulated plant defense. Molecular Cell 50, 504-515.
65. Huot B, Yao J, Montgomery BL, He SY. 2014. Growth-defense tradeoffs in plants: a balancing act to optimize ftness. Molecular Plant 7, 1267-1287.
66. Ito T, Ng KH, Lim TS, Yu H, Meyerowitz EM. 2007. The homeotic protein AGAMOUS controls late stamen development by regulating a jasmonate biosynthetic gene in Arabidopsis. The Plant Cell 19, 3516-3529.
67. Jiang H, Barbier H, Brutnell T. 2013. Methods for performing crosses in Setaria viridis, a new model system for the grasses. Journal of Visualized Experiments 80, 50527.
68. Katsir L, Schilmiller AL, Staswick PE, He SY, Howe GA. 2008. COI1 is a critical component of a receptor for jasmonate and the bacterial virulence factor coronatine. Proceedings of the National Academy of Sciences, USA 105, 7100-7105.
69. Kegge W, Weldegergis BT, Soler R, Vergeer-Van Eijk M, Dicke M, Voesenek LA, Pierik R. 2013. Canopy light cues affect emission of constitutive and methyl jasmonate-induced volatile organic compounds in Arabidopsis thaliana. New Phytologist 200, 861-874.
70. Kollner TG, Lenk C, Schnee C, Kopke S, Lindemann P, Gershenzon J, Degenhardt J. 2013. Localization of sesquiterpene formation and emission in maize leaves after herbivore damage. BMC Plant Biology 13, 15.
71. Koo AJ, Cooke TF, Howe GA. 2011. Cytochrome P450 CYP94B3 mediates catabolism and inactivation of the plant hormone jasmonoyl-l-isoleucine. Proceedings of the National Academy of Sciences, USA 108, 9298-9303.
72. Koo AJ, Gao X, Jones AD, Howe GA. 2009. A rapid wound signal activates the systemic synthesis of bioactive jasmonates in Arabidopsis. The Plant Journal 59, 974-986.
73. Koo AJ, Howe GA. 2009. The wound hormone jasmonate. Phytochemistry 70, 1571-1580.
74. Koo AJ, Thireault C, Zemelis S, Poudel AN, Zhang T, Kitaoka N, Brandizzi F, Matsuura H, Howe GA. 2014. Endoplasmic reticulum-associated inactivation of the hormone jasmonoyl-l-isoleucine by multiple members of the cytochrome P450 94 family in Arabidopsis. Journal of Biological Chemistry 43, 29728-29738.
75. Laurie-Berry N, Joardar V, Street IH, Kunkel BN. 2006. The Arabidopsis thaliana JASMONATE INSENSITIVE 1 gene is required for suppression of salicylic acid-dependent defenses during infection by Pseudomonas syringae. Molecular Plant-Microbe Interactions 19, 789-800.
76. Lee HY, Seo JS, Cho JH, Jung H, Kim JK, Lee JS, Rhee S, Do Choi Y. 2013. Oryza sativa COI homologues restore jasmonate signal transduction in Arabidopsis coi1-1 mutants. PLoS One 8, e52802.
77. Lee SH, Sakuraba Y, Lee T, Kim KW, An G, Lee HY, Paek NC. 2014. Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence. Journal of Integrative Plant Biology, doi: 10.1111/jipb.12276.
78. Leone M, Keller MM, Cerrudo I, Ballare CL. 2014. To grow or defend? Low red:far-red ratios reduce jasmonate sensitivity in Arabidopsis seedlings by promoting DELLA degradation and increasing JAZ10 stability. New Phytologist 204, 355-367.
79. Li L, Zhao Y, McCaig BC, Wingerd BA, Wang J, Whalon ME, Pichersky E, Howe GA. 2004. The tomato homolog of CORONATINE-INSENSITIVE1 is required for the maternal control of seed maturation, jasmonate-signaled defense responses, and glandular trichome development. The Plant Cell 16, 126-143.
80. Li P, Ponnala L, Gandotra N, et al. 2010. The developmental dynamics of the maize leaf transcriptome. Nature Genetics 42, 1060-1067.
81. Li Y, Jones L, McQueen-Mason S. 2003. Expansins and cell growth. Current Opinion in Plant Biology 6, 603-610.
82. Liu W, Tollenaar M. 2009. Physiological mechanisms underlying heterosis for shade tolerance in maize. Crop Science 49, 1817-1826.
83. Lorenzo O, Chico JM, Sanchez-Serrano JJ, Solano R. 2004. JASMONATE-INSENSITIVE1 encodes a MYC transcription factor essential to discriminate between different jasmonate-regulated defense responses in Arabidopsis. The Plant Cell 16, 1938-1950.
84. Lozano-Duran R, Macho AP, Boutrot F, Segonzac C, Somssich IE, Zipfel C. 2013. The transcriptional regulator BZR1 mediates trade-off between plant innate immunity and growth. Elife 2, e00983.
85. Lozano-Duran R, Zipfel C. 2015. Trade-off between growth and immunity: role of brassinosteroids. Trends in Plant Science 20, 12-19.
86. Lyons R, Manners JM, Kazan K. 2013. Jasmonate biosynthesis and signaling in monocots: a comparative overview. Plant Cell Reports 32, 815-827.
87. Majeran W, Friso G, Ponnala L, et al. 2010. Structural and metabolic transitions of C4 leaf development and differentiation defned by microscopy and quantitative proteomics in maize. The Plant Cell 22, 3509-3542.
88. Malvick D, Syverson R, Mollov D, Ishimaru CA. 2010. Goss's bacterial blight and wilt of corn caused by Clavibacter michiganensis subsp. nebraskensis occurs in Minnesota. Plant Disease 94, 1064-1064.
89. McKey D. 1974. Adaptive patterns in alkaloid physiology. American Naturalist 108, 305-320.
90. Meesters C, Monig T, Oeljeklaus J, Krahn D, Westfall CS, Hause B, Jez JM, Kaiser M, Kombrink E. 2014. A chemical inhibitor of jasmonate signaling targets JAR1 in Arabidopsis thaliana. Nature Chemical Biology 10, 830-836.
91. Meldau S, Erb M, Baldwin IT. 2012. Defence on demand: mechanisms behind optimal defence patterns. Annals of Botany 110, 1503-1514.
92. Meyer A, Miersch O, Büttner C, Dathe W, Sembdner G. 1984. Occurrence of the plant growth regulator jasmonic acid in plants. Journal of Plant Growth Regulation 3, 1-8.
93. Mitra S, Baldwin IT. 2008. Independently silencing two photosynthetic proteins in Nicotiana attenuata has different effects on herbivore resistance. Plant Physiology 148, 1128-1138.
94. Monte I, Hamberg M, Chini A, Gimenez-Ibanez S, Garcia-Casado G, Porzel A, Pazos F, Boter M, Solano R. 2014. Rational design of a ligand-based antagonist of jasmonate perception. Nature Chemical Biology 10, 671-676.
95. Moreno JE, Ballare CL. 2014. Phytochrome regulation of plant immunity in vegetation canopies. Journal of Chemical Ecology 40, 848-857.
96. Moreno JE, Shyu C, Campos ML, Patel LC, Chung HS, Yao J, He SY, Howe GA. 2013. Negative feedback control of jasmonate signaling by an alternative splice variant of JAZ10. Plant Physiology 162, 1006-1017.
97. Moreno JE, Tao Y, Chory J, Ballare CL. 2009. Ecological modulation of plant defense via phytochrome control of jasmonate sensitivity. Proceedings of the National Academy of Sciences, USA 106, 4935-4940.
98. Nelson T. 2011. The grass leaf developmental gradient as a platform for a systems understanding of the anatomical specialization of C(4) leaves. Journal of Experimental Botany 62, 3039-3048.
99. Noir S, Bomer M, Takahashi N, Ishida T, Tsui TL, Balbi V, Shanahan H, Sugimoto K, Devoto A. 2013. Jasmonate controls leaf growth by repressing cell proliferation and the onset of endoreduplication while maintaining a potential stand-by mode. Plant Physiology 161, 1930-1951.
100. Oka Y, Chet I, Spiegel Y. 1997. An immunoreactive protein to wheat-germ agglutinin antibody is induced in oat roots following invasion of the cereal cyst nematode Heterodera avenae, and by jasmonate. Molecular Plant-Microbe Interactions 10, 961-969.
101. Park SJ, Huang Y, Ayoubi P. 2006. Identifcation of expression profiles of sorghum genes in response to greenbug phloem-feeding using cDNA subtraction and microarray analysis. Planta 223, 932-947.
102. Pauwels L, Barbero GF, Geerinck J, et al. 2010. NINJA connects the co-repressor TOPLESS to jasmonate signalling. Nature 464, 788-791.
103. Pauwels L, Morreel K, De Witte E, Lammertyn F, Van Montagu M, Boerjan W, Inze D, Goossens A. 2008. Mapping methyl jasmonate-mediated transcriptional reprogramming of metabolism and cell cycle progression in cultured Arabidopsis cells. Proceedings of the National Academy of Sciences, USA 105, 1380-1385.
104. Peng J, Richards DE, Hartley NM, et al. 1999. 'Green revolution' genes encode mutant gibberellin response modulators. Nature 400, 256-261.
105. Penning BW, Hunter CT 3rd, Tayengwa R, et al. 2009. Genetic resources for maize cell wall biology. Plant Physiology 151, 1703-1728.
106. Pieterse CM, Leon-Reyes A, Van der Ent S, Van Wees SC. 2009. Networking by small-molecule hormones in plant immunity. Nature Chemical Biology 5, 308-316.
107. Pieterse CM, Pierik R, Van Wees SC. 2014. Different shades of JAZ during plant growth and defense. New Phytologist 204, 261-264.
108. Pieterse CM, Van der Does D, Zamioudis C, Leon-Reyes A, Van Wees SC. 2012. Hormonal modulation of plant immunity. Annual Review of Cell and Developmental Biology 28, 489-521.
109. Qi T, Song S, Ren Q, Wu D, Huang H, Chen Y, Fan M, Peng W, Ren C, Xie D. 2011. The Jasmonate-ZIM-domain proteins interact with the WD-Repeat/bHLH/MYB complexes to regulate jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thaliana. The Plant Cell 23, 1795-1814.
110. Reymond P, Bodenhausen N, Van Poecke RM, Krishnamurthy V, Dicke M, Farmer EE. 2004. A conserved transcript pattern in response to a specialist and a generalist herbivore. The Plant Cell 16, 3132-3147.
111. Robson F, Okamoto H, Patrick E, Harris SR, Wasternack C, Brearley C, Turner JG. 2010. Jasmonate and phytochrome A signaling in Arabidopsis wound and shade responses are integrated through JAZ1 stability. The Plant Cell 22, 1143-1160.
112. Salzman RA, Brady JA, Finlayson SA, et al. 2005. Transcriptional profling of sorghum induced by methyl jasmonate, salicylic acid, and aminocyclopropane carboxylic acid reveals cooperative regulation and novel gene responses. Plant Physiology 138, 352-368.
113. Sánchez-Rodríguez C, Rubio-Somoza I, Sibout R, Persson S. 2010. Phytohormones and the cell wall in Arabidopsis during seedling growth. Trends in Plant Science 15, 291-301.
114. Sasaki A, Ashikari M, Ueguchi-Tanaka M, et al. 2002. Green revolution: a mutant gibberellin-synthesis gene in rice. Nature 416, 701-702.
115. Sattler SE, Funnell-Harris DL. 2013. Modifying lignin to improve bioenergy feedstocks: strengthening the barrier against pathogens? Frontiers in Plant Science 4, 70.
116. Sehr EM, Agusti J, Lehner R, Farmer EE, Schwarz M, Greb T. 2010. Analysis of secondary growth in the Arabidopsis shoot reveals a positive role of jasmonate signalling in cambium formation. The Plant Journal 63, 811-822.
117. Seo JS, Joo J, Kim MJ, Kim YK, Nahm BH, Song SI, Cheong JJ, Lee JS, Kim JK, Choi YD. 2011. OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice. The Plant Journal 65, 907-921.
118. Sheard LB, Tan X, Mao H, et al. 2010. Jasmonate perception by inositol-phosphate-potentiated COI1-JAZ co-receptor. Nature 468, 400-405.
119. Shiu SH, Karlowski WM, Pan R, Tzeng YH, Mayer KF, Li WH. 2004. Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. The Plant Cell 16, 1220-1234.
120. Shivaji R, Camas A, Ankala A, Engelberth J, Tumlinson JH, Williams W P, Wilkinson JR, Luthe DS. 2010. Plants on constant alert: elevated levels of jasmonic acid and jasmonate-induced transcripts in caterpillar-resistant maize. Journal of Chemical Ecology 36, 179-191.
121. Shyu C, Figueroa P, Depew CL, Cooke TF, Sheard LB, Moreno JE, Katsir L, Zheng N, Browse J, Howe GA. 2012. JAZ8 lacks a canonical degron and has an EAR motif that mediates transcriptional repression of jasmonate responses in Arabidopsis. The Plant Cell 24, 536-550.
122. Smith H. 1995. Physiological and ecological function within the phytochrome family. Annual Review of Plant Biology 46, 289-315.
123. Smith H, Whitelam G. 1997. The shade avoidance syndrome: multiple responses mediated by multiple phytochromes. Plant, Cell and Environment 20, 840-844.
124. Song S, Qi T, Fan M, Zhang X, Gao H, Huang H, Wu D, Guo H, Xie D. 2013. The bHLH subgroup IIId factors negatively regulate jasmonate-mediated plant defense and development. PLoS Genetics 9, e1003653.
125. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28, 2731-2739.
126. Tan X, Calderon-Villalobos LI, Sharon M, Zheng C, Robinson CV, Estelle M, Zheng N. 2007. Mechanism of auxin perception by the TIR1 ubiquitin ligase. Nature 446, 640-645.
127. Thines B, Katsir L, Melotto M, Niu Y, Mandaokar A, Liu G, Nomura K, He SY, Howe GA, Browse J. 2007. JAZ repressor proteins are targets of the SCF(COI1) complex during jasmonate signalling. Nature 448, 661-665.
128. Vermerris W. 2011. Survey of genomics approaches to improve bioenergy traits in maize, sorghum and sugarcane. Journal of Integrative Plant Biology 53, 105-119.
129. Wasternack C, Hause B. 2013. Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany. Annals of Botany 111, 1021-1058.
130. Wild M, Daviere JM, Cheminant S, Regnault T, Baumberger N, Heintz D, Baltz R, Genschik P, Achard P. 2012. The Arabidopsis DELLA RGA-LIKE3 is a direct target of MYC2 and modulates jasmonate signaling responses. The Plant Cell 24, 3307-3319.
131. Williams WP, Davis FM, Windham GL. 1990. Registration of Mp708 germplasm line of maize. Crop Science 30, 757.
132. Wolfe KH, Gouy M, Yang Y-W, Sharp PM, Li W-H. 1989. Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proceedings of the National Academy of Sciences, USA 86, 6201-6205.
133. Xin XF, He SY. 2013. Pseudomonas syringae pv. tomato DC3000: a model pathogen for probing disease susceptibility and hormone signaling in plants. Annual Review of Phytopathology 51, 473-498.
134. Yamada S, Kano A, Tamaoki D, Miyamoto A, Shishido H, Miyoshi S, Taniguchi S, Akimitsu K, Gomi K. 2012. Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice. Plant and Cell Physiology 53, 2060-2072.
135. Yamane H, Takagi H, Abe H, Yokota T, Takahashi N. 1981. Identifcation of jasmonic acid in three species of higher plants and its biological activities. Plant and Cell Physiology 22, 689-697.
136. Yan Y, Christensen S, Isakeit T, Engelberth J, Meeley R, Hayward A, Emery RJ, Kolomiets MV. 2012. Disruption of OPR7 and OPR8 reveals the versatile functions of jasmonic acid in maize development and defense. The Plant Cell 24, 1420-1436.
137. Yan Y, Huang P-C, Borrego E, Kolomiets M. 2014. New perspectives into jasmonate roles in maize. Plant Signaling and Behavior 9, e970442.
138. Yan Y, Stolz S, Chetelat A, Reymond P, Pagni M, Dubugnon L, Farmer EE. 2007. A downstream mediator in the growth repression limb of the jasmonate pathway. The Plant Cell 19, 2470-2483.
139. Yang DL, Yao J, Mei CS, et al. 2012. Plant hormone jasmonate prioritizes defense over growth by interfering with gibberellin signaling cascade. Proceedings of the National Academy of Sciences, USA 109, E1192-E1200.
140. Zhang Y, Turner JG. 2008. Wound-induced endogenous jasmonates stunt plant growth by inhibiting mitosis. PLoS One 3, e3699.
141. Zhu-Salzman K, Salzman RA, Ahn JE, Koiwa H. 2004. Transcriptional regulation of sorghum defense determinants against a phloem-feeding aphid. Plant Physiology 134, 420-431.
142. Zou J, Rodriguez-Zas S, Aldea M, Li M, Zhu J, Gonzalez DO, Vodkin LO, DeLucia E, Clough SJ. 2005. Expression profling soybean response to Pseudomonas syringae reveals new defense-related genes and rapid HR-specifc downregulation of photosynthesis. Molecular Plant-Microbe Interactions 18, 1161-1174.